Q97V88 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97V88 - Uncharacterized protein

UniProt:	Q97V88	Sequences: MKIKKGDTEAEILTKGAYLYSFKIGNRDMILRGDLERPTRGGMAILIPFANRVKNAEYVFEGVKYTLPQNREGNAIHGLVMDKEFNVIGKSEDSISLQYILEHEGYPSKLDCVITYKVFKYGLRIKIVVRNVGNKRAPLTVGAHPYFITADDWRIVVEKEESIKKCISFNKIPTGELVKTKLEHTDYDDCFLISGGIQLHSSYSKVRITRRNMPFVQIYTGVRGSIAIEPMSGAPDAYHNGLGLKILEPNESSYFAFAFRFH	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	262 (251)
Sequences:	5995 (4569)
Seq/√Len:	288.4

ECOLI - YIHR YPHB GALM YEAD
BACSU - GALM
SULSO - Q97V88

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
56_A	69_Q	2.963	1.00
199_L	226_I	2.905	1.00
75_A	106_Y	2.904	1.00
57_E	64_K	2.843	1.00
88_I	98_Q	2.601	1.00
160_E	194_S	2.577	1.00
136_R	248_E	2.535	1.00
100_I	111_D	2.529	1.00
10_A	22_F	2.526	1.00
236_D	240_N	2.369	1.00
9_E	23_K	2.345	1.00
96_S	115_T	2.271	1.00
100_I	109_K	2.243	1.00
163_I	190_C	2.167	1.00
13_L	20_Y	2.165	1.00
109_K	134_N	2.148	1.00
83_K	99_Y	2.128	1.00
96_S	113_V	2.113	1.00
21_S	28_D	2.095	1.00
98_Q	113_V	2.052	1.00
126_K	254_Y	2.051	1.00
209_T	260_R	2.050	1.00
128_V	252_S	2.040	1.00
94_S	117_K	1.994	1.00
124_R	256_A	1.977	1.00
218_I	226_I	1.946	1.00
126_K	256_A	1.923	1.00
14_T	84_E	1.893	1.00
17_A	97_L	1.853	1.00
113_V	128_V	1.844	1.00
11_E	21_S	1.843	1.00
122_G	258_A	1.835	1.00
248_E	251_E	1.822	1.00
119_F	122_G	1.806	1.00
98_Q	111_D	1.780	1.00
61_E	136_R	1.773	1.00
12_I	97_L	1.771	1.00
91_S	94_S	1.767	1.00
8_T	22_F	1.759	1.00
201_S	206_V	1.749	1.00
10_A	19_L	1.744	1.00
59_V	64_K	1.735	1.00
122_G	260_R	1.733	1.00
198_Q	207_R	1.727	1.00
117_K	126_K	1.726	1.00
166_C	176_E	1.719	1.00
57_E	66_T	1.702	1.00
128_V	254_Y	1.702	1.00
130_R	252_S	1.690	1.00
10_A	123_L	1.673	1.00
138_P	246_I	1.669	1.00
68_P	104_E	1.653	1.00
124_R	258_A	1.651	1.00
54_K	236_D	1.619	1.00
230_P	257_F	1.594	1.00
60_F	246_I	1.573	1.00
110_L	139_L	1.563	1.00
80_V	112_C	1.552	1.00
45_I	114_I	1.546	1.00
17_A	45_I	1.544	1.00
46_L	142_G	1.518	1.00
119_F	124_R	1.508	1.00
51_N	217_Q	1.504	1.00
156_V	198_Q	1.504	1.00
80_V	99_Y	1.491	1.00
5_K	120_K	1.488	1.00
154_R	200_H	1.456	1.00
12_I	95_I	1.443	1.00
61_E	135_K	1.435	1.00
30_I	145_P	1.430	1.00
115_T	128_V	1.428	1.00
71_R	74_N	1.424	1.00
140_T	233_G	1.421	1.00
213_M	255_F	1.418	1.00
73_G	170_N	1.415	1.00
89_G	96_S	1.399	1.00
94_S	115_T	1.367	1.00
89_G	94_S	1.367	1.00
103_H	135_K	1.365	1.00
88_I	96_S	1.359	1.00
49_F	238_Y	1.348	1.00
111_D	130_R	1.347	1.00
212_N	255_F	1.343	1.00
63_V	135_K	1.341	1.00
117_K	124_R	1.328	1.00
213_M	233_G	1.315	1.00
192_L	234_A	1.314	1.00
236_D	239_H	1.294	1.00
15_K	84_E	1.293	1.00
19_L	123_L	1.284	1.00
49_F	245_K	1.283	1.00
8_T	24_I	1.269	1.00
154_R	202_S	1.265	1.00
198_Q	209_T	1.254	1.00
19_L	30_I	1.251	1.00
166_C	178_V	1.233	1.00
131_N	249_P	1.224	1.00
233_G	245_K	1.217	1.00
136_R	249_P	1.211	1.00
86_N	98_Q	1.194	1.00
210_R	260_R	1.182	1.00
8_T	118_V	1.162	1.00
216_V	228_I	1.161	1.00
88_I	113_V	1.148	1.00
129_V	139_L	1.143	1.00
101_L	109_K	1.142	1.00
201_S	204_S	1.126	1.00
167_I	171_K	1.121	1.00
136_R	246_I	1.117	1.00
139_L	253_S	1.106	1.00
161_E	179_K	1.102	1.00
41_G	81_M	1.094	1.00
48_P	101_L	1.082	1.00
55_N	73_G	1.071	1.00
56_A	66_T	1.068	1.00
157_V	218_I	1.061	1.00
7_D	25_G	1.061	1.00
22_F	147_F	1.056	1.00
162_S	178_V	1.054	1.00
190_C	217_Q	1.053	1.00
200_H	207_R	1.051	1.00
55_N	74_N	1.050	1.00
87_V	95_I	1.036	1.00
13_L	18_Y	1.036	1.00
174_T	177_L	1.034	1.00
221_G	225_S	1.034	1.00
155_I	199_L	1.018	1.00
114_I	125_I	1.010	1.00
24_I	29_M	1.007	1.00
139_L	247_L	1.007	1.00
93_D	117_K	1.006	1.00
215_F	234_A	1.004	1.00
190_C	215_F	1.002	1.00
18_Y	44_A	0.998	1.00
151_D	223_R	0.993	1.00
28_D	32_R	0.990	1.00
49_F	75_A	0.983	1.00
54_K	168_S	0.982	1.00
61_E	248_E	0.976	1.00
31_L	225_S	0.976	1.00
69_Q	73_G	0.972	1.00
54_K	172_I	0.970	1.00
66_T	69_Q	0.969	1.00
116_Y	125_I	0.964	1.00
59_V	62_G	0.964	1.00
49_F	53_V	0.962	1.00
40_R	82_D	0.957	1.00
237_A	245_K	0.957	1.00
187_Y	191_F	0.955	1.00
19_L	145_P	0.951	1.00
115_T	126_K	0.943	1.00
247_L	252_S	0.923	1.00
45_I	143_A	0.922	1.00
23_K	28_D	0.920	1.00
112_C	141_V	0.909	1.00
74_N	170_N	0.908	1.00
53_V	67_L	0.908	1.00
48_P	110_L	0.900	1.00
83_K	102_E	0.897	1.00
102_E	109_K	0.897	1.00
54_K	239_H	0.895	1.00
153_W	201_S	0.895	1.00
155_I	218_I	0.895	1.00
125_I	143_A	0.886	1.00
6_G	120_K	0.885	1.00
71_R	76_I	0.884	1.00
87_V	90_K	0.881	1.00
144_H	229_E	0.878	1.00
193_I	211_R	0.878	1.00
99_Y	104_E	0.878	1.00
97_L	116_Y	0.872	1.00
45_I	116_Y	0.863	1.00
22_F	30_I	0.859	1.00
112_C	129_V	0.858	1.00
141_V	253_S	0.850	1.00
5_K	118_V	0.848	1.00
58_Y	65_Y	0.847	1.00
156_V	200_H	0.844	1.00
197_I	216_V	0.840	1.00
77_H	229_E	0.840	1.00
157_V	197_I	0.838	1.00
61_E	246_I	0.833	1.00
230_P	255_F	0.829	1.00
185_T	222_V	0.825	1.00
80_V	110_L	0.818	1.00
22_F	29_M	0.818	1.00
162_S	166_C	0.816	1.00
187_Y	218_I	0.805	0.99
114_I	127_I	0.800	0.99
215_F	243_G	0.798	0.99
138_P	238_Y	0.794	0.99
47_I	112_C	0.794	0.99
77_H	144_H	0.793	0.99
41_G	76_I	0.792	0.99
138_P	244_L	0.790	0.99
45_I	127_I	0.785	0.99
67_L	75_A	0.784	0.99
90_K	95_I	0.784	0.99
85_F	112_C	0.782	0.99
157_V	216_V	0.781	0.99
33_G	41_G	0.775	0.99
75_A	78_G	0.770	0.99
155_I	228_I	0.764	0.99
210_R	258_A	0.764	0.99
131_N	247_L	0.764	0.99
127_I	141_V	0.763	0.99
234_A	243_G	0.762	0.99
161_E	177_L	0.758	0.99
68_P	75_A	0.750	0.99
79_L	82_D	0.750	0.99
85_F	114_I	0.748	0.99
158_E	194_S	0.745	0.99
11_E	20_Y	0.744	0.99
47_I	80_V	0.743	0.99
233_G	237_A	0.737	0.99
32_R	148_I	0.736	0.99
90_K	94_S	0.732	0.99
24_I	206_V	0.731	0.99
110_L	137_A	0.729	0.99
57_E	239_H	0.725	0.99
8_T	121_Y	0.720	0.99
19_L	143_A	0.720	0.99
80_V	101_L	0.714	0.99
149_T	153_W	0.713	0.99
30_I	147_F	0.712	0.99
185_T	188_D	0.710	0.99
21_S	32_R	0.707	0.99
190_C	231_M	0.704	0.99
8_T	29_M	0.702	0.99
127_I	142_G	0.700	0.99
51_N	190_C	0.699	0.99
18_Y	38_P	0.697	0.99
52_R	69_Q	0.691	0.98
218_I	228_I	0.689	0.98
12_I	19_L	0.688	0.98
69_Q	75_A	0.688	0.98
199_L	228_I	0.687	0.98
49_F	138_P	0.687	0.98
19_L	22_F	0.686	0.98
11_E	23_K	0.686	0.98
60_F	108_S	0.685	0.98
152_D	203_Y	0.684	0.98
49_F	237_A	0.683	0.98
54_K	240_N	0.680	0.98
8_T	25_G	0.679	0.98
110_L	129_V	0.678	0.98
186_D	220_T	0.676	0.98
7_D	121_Y	0.673	0.98
212_N	256_A	0.660	0.98
113_V	130_R	0.660	0.98
38_P	81_M	0.659	0.98
127_I	255_F	0.658	0.98
22_F	123_L	0.658	0.98
131_N	137_A	0.658	0.98
48_P	78_G	0.657	0.98
14_T	87_V	0.655	0.98
151_D	154_R	0.653	0.98
55_N	69_Q	0.652	0.98
87_V	97_L	0.651	0.98
46_L	50_A	0.650	0.98
147_F	259_F	0.650	0.98
153_W	199_L	0.650	0.98
127_I	257_F	0.650	0.98
163_I	234_A	0.645	0.98
129_V	253_S	0.643	0.97
5_K	8_T	0.642	0.97
26_N	206_V	0.640	0.97
53_V	238_Y	0.639	0.97
112_C	127_I	0.638	0.97
48_P	104_E	0.637	0.97
44_A	81_M	0.636	0.97
166_C	174_T	0.633	0.97
78_G	106_Y	0.632	0.97
55_N	170_N	0.629	0.97
191_F	218_I	0.627	0.97
131_N	136_R	0.625	0.97
50_A	231_M	0.624	0.97
170_N	173_P	0.621	0.97
174_T	178_V	0.620	0.97
54_K	170_N	0.615	0.97
58_Y	67_L	0.612	0.97
201_S	205_K	0.611	0.97
182_L	186_D	0.609	0.97
93_D	120_K	0.609	0.97
208_I	259_F	0.608	0.96
86_N	100_I	0.607	0.96
247_L	251_E	0.606	0.96
45_I	112_C	0.606	0.96
12_I	123_L	0.605	0.96
210_R	213_M	0.605	0.96
46_L	81_M	0.603	0.96
50_A	233_G	0.603	0.96
166_C	177_L	0.602	0.96
76_I	81_M	0.598	0.96
9_E	21_S	0.598	0.96
27_R	205_K	0.595	0.96
217_Q	231_M	0.595	0.96
211_R	257_F	0.594	0.96
190_C	193_I	0.594	0.96
121_Y	260_R	0.592	0.96
129_V	141_V	0.590	0.96
65_Y	108_S	0.590	0.96
14_T	86_N	0.585	0.96
60_F	67_L	0.584	0.96
7_D	120_K	0.581	0.95
15_K	18_Y	0.581	0.95
52_R	56_A	0.580	0.95
52_R	77_H	0.580	0.95
43_M	143_A	0.580	0.95
106_Y	137_A	0.577	0.95
184_H	223_R	0.576	0.95
80_V	85_F	0.575	0.95
52_R	229_E	0.574	0.95
57_E	69_Q	0.571	0.95
33_G	40_R	0.569	0.95
168_S	171_K	0.566	0.95
71_R	75_A	0.563	0.95
59_V	65_Y	0.562	0.95
50_A	140_T	0.561	0.95
50_A	217_Q	0.561	0.95
85_F	99_Y	0.560	0.95
245_K	253_S	0.560	0.95
80_V	83_K	0.560	0.95
15_K	36_E	0.555	0.94
36_E	84_E	0.555	0.94
17_A	116_Y	0.553	0.94
14_T	97_L	0.551	0.94
186_D	191_F	0.550	0.94
146_Y	219_Y	0.547	0.94
53_V	58_Y	0.546	0.94
8_T	122_G	0.545	0.94
18_Y	82_D	0.540	0.93
33_G	38_P	0.538	0.93
127_I	213_M	0.538	0.93
154_R	158_E	0.536	0.93
101_L	110_L	0.535	0.93
148_I	153_W	0.535	0.93
56_A	75_A	0.535	0.93
79_L	104_E	0.534	0.93
108_S	137_A	0.531	0.93
53_V	56_A	0.529	0.93
12_I	116_Y	0.529	0.93
206_V	209_T	0.528	0.93
54_K	74_N	0.528	0.93
145_P	230_P	0.527	0.93
155_I	226_I	0.527	0.93
137_A	247_L	0.527	0.93
162_S	191_F	0.527	0.93
60_F	65_Y	0.526	0.92
219_Y	227_A	0.526	0.92
233_G	244_L	0.526	0.92
56_A	68_P	0.526	0.92
18_Y	42_G	0.525	0.92
142_G	227_A	0.525	0.92
237_A	243_G	0.523	0.92
161_E	194_S	0.523	0.92
90_K	96_S	0.522	0.92
216_V	230_P	0.520	0.92
78_G	104_E	0.518	0.92
33_G	42_G	0.516	0.92
143_A	257_F	0.516	0.92
168_S	173_P	0.515	0.92
99_Y	102_E	0.515	0.92
6_G	121_Y	0.515	0.92
88_I	111_D	0.515	0.92
182_L	185_T	0.514	0.92
87_V	98_Q	0.513	0.92
175_G	178_V	0.509	0.91
59_V	239_H	0.508	0.91
58_Y	239_H	0.506	0.91
20_Y	41_G	0.506	0.91
17_A	114_I	0.504	0.91
159_K	180_T	0.503	0.91
116_Y	123_L	0.501	0.91
70_N	74_N	0.500	0.90
177_L	192_L	0.500	0.90

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1z45A	2	0.9885	100	0.194	Contact Map
1ygaA	2	0.9885	100	0.198	Contact Map
1lurA	1	0.9809	100	0.212	Contact Map
1snzA	1	0.9771	100	0.223	Contact Map
4rnlA	1	0.9771	100	0.226	Contact Map
1nsxA	2	0.9771	100	0.241	Contact Map
3imhA	3	0.9695	100	0.246	Contact Map
3mwxA	1	0.9885	100	0.249	Contact Map
3q1nA	1	0.9618	100	0.253	Contact Map
3nreA	1	0.9809	100	0.256	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0094 seconds.