Q97V79 - SULSO - GREMLIN Contacts

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Q97V79 - Pyruvate synthase beta chain (Pyruvic-ferredoxin oxidoreductase beta chain) (PorB-2)

UniProt:	Q97V79	Sequences: MSLGLREILNKHNGILSGTSACPGCPENMAMRMLGMGLGKDVVLVVVAGCSSVIQGNAPYNAYNFPTVNVAFAAGPATAAGLARAYKQKGKNVTIVVWAGDGGSADIGFASLSGAAERNDNILYLTVDNEAYMNSGGQRSGSTPFGAITTTTPEGKKENKKNLPLLMIAHNVPYVATASVGYPHDYIEKLKKARQVEGFRYVHVLTPDPYGWLFDPSKTVEVAKLAVQTCYWPLFEYYNGKLNISSESLHCLDRRTRRPIRDFLSIQGRFKKLTDEQIKILEQYIDNLWEKLKSMLNNP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	299 (268)
Sequences:	2439 (1210)
Seq/√Len:	73.9

ECOLI - NIFJ
HALSA - F2Z6I7 Q9HRZ6
SULSO - Q97V79 Q97YV0 Q7LX68 Q97V20

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
121_N	197_E	5.605	1.00
123_L	200_R	4.522	1.00
164_P	235_F	4.146	1.00
178_A	186_Y	3.904	1.00
193_A	202_V	3.539	1.00
126_T	201_Y	2.797	1.00
218_K	221_E	2.790	1.00
162_N	165_L	2.700	1.00
178_A	189_K	2.650	1.00
195_Q	240_G	2.517	1.00
116_A	167_M	2.493	1.00
43_V	82_L	2.491	1.00
191_K	195_Q	2.448	1.00
31_M	98_W	2.393	1.00
34_L	190_L	2.346	1.00
143_T	147_A	2.248	1.00
222_V	266_I	2.244	1.00
97_V	122_I	2.211	1.00
280_I	283_Q	2.197	1.00
16_L	54_I	2.176	1.00
115_A	122_I	2.127	1.00
213_L	268_G	2.108	1.00
79_A	97_V	2.099	1.00
261_R	282_E	2.043	1.00
185_D	189_K	2.026	1.00
128_D	203_H	1.963	1.00
27_E	127_V	1.928	1.00
173_P	196_V	1.852	1.00
99_A	124_Y	1.846	1.00
124_Y	199_F	1.838	1.00
195_Q	238_Y	1.822	1.00
116_A	199_F	1.792	1.00
130_E	160_K	1.787	1.00
279_K	283_Q	1.786	1.00
34_L	98_W	1.779	1.00
229_T	258_R	1.777	1.00
177_T	203_H	1.768	1.00
45_V	82_L	1.758	1.00
125_L	190_L	1.739	1.00
42_V	94_T	1.725	1.00
123_L	194_R	1.708	1.00
34_L	125_L	1.706	1.00
75_G	97_V	1.679	1.00
32_R	36_M	1.672	1.00
96_V	194_R	1.662	1.00
104_S	124_Y	1.643	1.00
99_A	104_S	1.606	0.99
68_V	78_T	1.583	0.99
79_A	95_I	1.538	0.99
207_P	219_T	1.528	0.99
167_M	201_Y	1.504	0.99
125_L	204_V	1.496	0.99
179_S	227_V	1.473	0.99
261_R	265_S	1.470	0.99
192_K	195_Q	1.465	0.99
112_L	167_M	1.450	0.99
210_Y	213_L	1.448	0.99
45_V	97_V	1.444	0.99
31_M	54_I	1.411	0.99
179_S	223_A	1.408	0.99
144_P	147_A	1.405	0.99
70_V	78_T	1.404	0.99
41_D	92_N	1.398	0.99
265_S	274_T	1.397	0.98
45_V	79_A	1.391	0.98
238_Y	241_K	1.385	0.98
268_G	272_K	1.376	0.98
105_A	126_T	1.363	0.98
190_L	202_V	1.360	0.98
43_V	95_I	1.351	0.98
129_N	133_M	1.335	0.98
36_M	187_I	1.325	0.98
126_T	163_L	1.323	0.98
30_A	206_T	1.322	0.98
277_Q	280_I	1.320	0.98
98_W	127_V	1.317	0.98
225_L	228_Q	1.298	0.98
250_H	253_D	1.296	0.98
179_S	205_L	1.295	0.98
31_M	127_V	1.292	0.97
48_A	69_N	1.287	0.97
30_A	204_V	1.279	0.97
247_E	250_H	1.276	0.97
104_S	126_T	1.276	0.97
176_A	189_K	1.275	0.97
241_K	246_S	1.274	0.97
164_P	201_Y	1.270	0.97
240_G	243_N	1.266	0.97
227_V	234_L	1.247	0.97
149_T	152_T	1.245	0.97
196_V	200_R	1.244	0.97
112_L	124_Y	1.224	0.97
225_L	266_I	1.218	0.96
178_A	190_L	1.215	0.96
76_P	124_Y	1.212	0.96
212_W	215_D	1.208	0.96
128_D	160_K	1.207	0.96
248_S	252_L	1.204	0.96
259_P	262_D	1.202	0.96
186_Y	190_L	1.201	0.96
38_L	194_R	1.189	0.96
39_G	64_N	1.172	0.96
174_Y	192_K	1.170	0.95
178_A	185_D	1.167	0.95
222_V	267_Q	1.151	0.95
157_K	280_I	1.151	0.95
90_G	93_V	1.144	0.95
80_A	120_D	1.136	0.95
224_K	228_Q	1.135	0.95
210_Y	215_D	1.132	0.95
160_K	177_T	1.126	0.94
236_E	239_N	1.125	0.94
180_V	220_V	1.112	0.94
278_I	281_L	1.108	0.94
249_L	252_L	1.094	0.94
230_C	257_R	1.089	0.93
178_A	204_V	1.073	0.93
239_N	243_N	1.066	0.93
145_F	159_N	1.064	0.93
46_V	67_T	1.060	0.92
48_A	53_V	1.059	0.92
180_V	186_Y	1.058	0.92
164_P	175_V	1.054	0.92
188_E	192_K	1.053	0.92
48_A	74_A	1.053	0.92
54_I	127_V	1.048	0.92
119_N	199_F	1.041	0.92
172_V	175_V	1.041	0.92
167_M	175_V	1.036	0.92
80_A	118_R	1.036	0.92
248_S	253_D	1.036	0.92
52_S	69_N	1.033	0.91
83_A	120_D	1.024	0.91
192_K	254_R	1.024	0.91
31_M	35_G	1.016	0.91
164_P	177_T	1.015	0.91
185_D	249_L	1.007	0.90
163_L	201_Y	1.005	0.90
48_A	52_S	1.003	0.90
158_E	172_V	0.997	0.90
21_A	28_N	0.994	0.90
256_T	259_P	0.994	0.90
241_K	244_I	0.990	0.90
44_L	63_Y	0.989	0.90
34_L	96_V	0.986	0.89
84_R	120_D	0.986	0.89
105_A	142_S	0.974	0.89
143_T	149_T	0.971	0.89
94_T	194_R	0.967	0.88
226_A	263_F	0.963	0.88
237_Y	245_S	0.963	0.88
258_R	262_D	0.958	0.88
273_L	281_L	0.948	0.87
125_L	202_V	0.946	0.87
187_I	191_K	0.944	0.87
59_P	72_F	0.943	0.87
82_L	95_I	0.941	0.87
231_Y	260_I	0.941	0.87
240_G	250_H	0.937	0.87
139_R	152_T	0.936	0.87
261_R	275_D	0.932	0.87
237_Y	240_G	0.931	0.87
57_N	60_Y	0.913	0.85
52_S	56_G	0.912	0.85
228_Q	257_R	0.909	0.85
127_V	206_T	0.909	0.85
240_G	244_I	0.907	0.85
260_I	270_F	0.906	0.85
228_Q	258_R	0.905	0.85
272_K	276_E	0.901	0.85
238_Y	250_H	0.901	0.85
29_M	32_R	0.899	0.85
52_S	74_A	0.895	0.84
38_L	42_V	0.893	0.84
246_S	250_H	0.892	0.84
96_V	123_L	0.891	0.84
249_L	253_D	0.884	0.84
41_D	94_T	0.883	0.83
260_I	264_L	0.868	0.82
31_M	63_Y	0.865	0.82
71_A	201_Y	0.856	0.82
105_A	163_L	0.856	0.82
34_L	42_V	0.852	0.81
110_A	113_S	0.851	0.81
222_V	225_L	0.850	0.81
274_T	277_Q	0.850	0.81
261_R	274_T	0.847	0.81
79_A	122_I	0.842	0.80
30_A	127_V	0.842	0.80
75_G	103_G	0.829	0.79
29_M	33_M	0.825	0.79
83_A	95_I	0.823	0.79
53_V	56_G	0.814	0.78
188_E	191_K	0.813	0.78
38_L	96_V	0.809	0.78
46_V	55_Q	0.809	0.78
123_L	190_L	0.806	0.77
211_G	215_D	0.802	0.77
231_Y	263_F	0.801	0.77
75_G	132_Y	0.801	0.77
76_P	115_A	0.798	0.77
105_A	203_H	0.796	0.77
113_S	170_H	0.794	0.76
261_R	264_L	0.794	0.76
278_I	282_E	0.793	0.76
68_V	82_L	0.791	0.76
52_S	55_Q	0.790	0.76
119_N	172_V	0.789	0.76
165_L	168_I	0.787	0.76
51_S	127_V	0.782	0.75
239_N	242_L	0.782	0.75
274_T	281_L	0.781	0.75
192_K	238_Y	0.778	0.75
232_W	236_E	0.778	0.75
230_C	236_E	0.777	0.75
274_T	282_E	0.773	0.74
217_S	221_E	0.772	0.74
179_S	182_Y	0.764	0.74
48_A	67_T	0.763	0.74
94_T	121_N	0.758	0.73
72_F	107_I	0.754	0.73
75_G	99_A	0.754	0.73
186_Y	204_V	0.745	0.72
241_K	250_H	0.744	0.72
254_R	282_E	0.742	0.71
264_L	270_F	0.741	0.71
21_A	54_I	0.736	0.71
38_L	94_T	0.735	0.71
166_L	169_A	0.735	0.71
275_D	283_Q	0.734	0.71
71_A	74_A	0.732	0.70
182_Y	226_A	0.731	0.70
33_M	186_Y	0.727	0.70
192_K	236_E	0.727	0.70
98_W	125_L	0.727	0.70
35_G	63_Y	0.725	0.70
197_E	240_G	0.725	0.70
113_S	161_K	0.723	0.69
26_P	29_M	0.715	0.69
19_T	28_N	0.714	0.69
48_A	72_F	0.714	0.69
53_V	69_N	0.714	0.69
260_I	263_F	0.712	0.68
220_V	223_A	0.710	0.68
232_W	239_N	0.709	0.68
116_A	201_Y	0.708	0.68
50_C	107_I	0.708	0.68
262_D	265_S	0.697	0.67
271_K	275_D	0.697	0.67
238_Y	243_N	0.694	0.66
137_G	148_I	0.693	0.66
109_F	113_S	0.691	0.66
229_T	259_P	0.691	0.66
34_L	127_V	0.683	0.65
22_C	25_C	0.683	0.65
112_L	168_I	0.681	0.65
177_T	260_I	0.679	0.65
48_A	63_Y	0.675	0.64
260_I	281_L	0.672	0.64
131_A	147_A	0.671	0.64
145_F	280_I	0.670	0.64
50_C	81_G	0.670	0.64
181_G	224_K	0.669	0.63
245_S	248_S	0.668	0.63
205_L	231_Y	0.667	0.63
43_V	93_V	0.667	0.63
163_L	175_V	0.666	0.63
181_G	207_P	0.666	0.63
255_R	268_G	0.664	0.63
236_E	240_G	0.663	0.63
241_K	247_E	0.663	0.63
56_G	74_A	0.662	0.63
168_I	224_K	0.661	0.63
215_D	218_K	0.659	0.62
27_E	206_T	0.659	0.62
15_I	55_Q	0.654	0.62
49_G	74_A	0.653	0.62
197_E	262_D	0.653	0.62
81_G	85_A	0.653	0.62
154_E	157_K	0.652	0.62
159_N	262_D	0.651	0.61
274_T	283_Q	0.646	0.61
260_I	265_S	0.646	0.61
264_L	274_T	0.644	0.61
168_I	235_F	0.643	0.60
92_N	121_N	0.643	0.60
106_D	141_G	0.643	0.60
39_G	42_V	0.640	0.60
117_E	139_R	0.638	0.60
33_M	187_I	0.632	0.59
58_A	61_N	0.631	0.59
53_V	79_A	0.630	0.59
168_I	237_Y	0.630	0.59
96_V	125_L	0.626	0.58
272_K	277_Q	0.625	0.58
274_T	280_I	0.624	0.58
177_T	233_P	0.624	0.58
76_P	111_S	0.623	0.58
33_M	36_M	0.617	0.57
254_R	257_R	0.617	0.57
33_M	183_P	0.617	0.57
59_P	69_N	0.617	0.57
219_T	223_A	0.615	0.57
135_S	208_D	0.615	0.57
221_E	225_L	0.614	0.57
131_A	137_G	0.611	0.57
75_G	79_A	0.608	0.56
51_S	206_T	0.605	0.56
237_Y	242_L	0.604	0.56
42_V	90_G	0.602	0.55
277_Q	283_Q	0.602	0.55
53_V	106_D	0.602	0.55
139_R	260_I	0.601	0.55
70_V	74_A	0.601	0.55
189_K	202_V	0.601	0.55
264_L	268_G	0.599	0.55
107_I	110_A	0.599	0.55
191_K	197_E	0.597	0.55
51_S	107_I	0.597	0.55
266_I	270_F	0.596	0.55
233_P	236_E	0.595	0.55
22_C	208_D	0.592	0.54
113_S	166_L	0.590	0.54
268_G	275_D	0.590	0.54
45_V	78_T	0.590	0.54
123_L	202_V	0.589	0.54
13_N	64_N	0.589	0.54
279_K	282_E	0.584	0.53
93_V	283_Q	0.584	0.53
136_G	174_Y	0.581	0.53
160_K	231_Y	0.581	0.53
274_T	278_I	0.580	0.53
189_K	236_E	0.579	0.53
109_F	114_G	0.578	0.52
116_A	124_Y	0.578	0.52
46_V	52_S	0.577	0.52
261_R	271_K	0.570	0.51
164_P	168_I	0.567	0.51
166_L	170_H	0.566	0.51
59_P	62_A	0.565	0.51
230_C	234_L	0.564	0.51
228_Q	259_P	0.563	0.51
27_E	162_N	0.561	0.50
144_P	166_L	0.559	0.50
237_Y	241_K	0.559	0.50
168_I	175_V	0.556	0.50
209_P	214_F	0.555	0.50
58_A	83_A	0.555	0.50
99_A	103_G	0.554	0.49
27_E	71_A	0.552	0.49
143_T	155_G	0.550	0.49
231_Y	234_L	0.548	0.49
180_V	207_P	0.547	0.49
82_L	85_A	0.545	0.48
37_G	180_V	0.543	0.48
227_V	263_F	0.543	0.48
276_E	279_K	0.538	0.47
239_N	245_S	0.537	0.47
49_G	71_A	0.535	0.47
275_D	279_K	0.533	0.47
102_G	208_D	0.533	0.47
214_F	266_I	0.532	0.47
184_H	188_E	0.529	0.46
53_V	61_N	0.527	0.46
60_Y	95_I	0.527	0.46
20_S	53_V	0.527	0.46
95_I	283_Q	0.526	0.46
50_C	208_D	0.526	0.46
148_I	273_L	0.525	0.46
46_V	51_S	0.524	0.46
176_A	198_G	0.523	0.46
139_R	142_S	0.520	0.45
38_L	123_L	0.519	0.45
29_M	220_V	0.519	0.45
275_D	280_I	0.519	0.45
238_Y	245_S	0.517	0.45
19_T	32_R	0.517	0.45
216_P	220_V	0.517	0.45
48_A	56_G	0.515	0.45
268_G	271_K	0.514	0.45
49_G	155_G	0.514	0.45
252_L	255_R	0.512	0.44
47_V	103_G	0.512	0.44
20_S	52_S	0.511	0.44
241_K	245_S	0.510	0.44
148_I	272_K	0.509	0.44
263_F	266_I	0.508	0.44
50_C	170_H	0.508	0.44
31_M	184_H	0.506	0.44
110_A	161_K	0.505	0.43
242_L	245_S	0.504	0.43
22_C	50_C	0.503	0.43
271_K	277_Q	0.503	0.43
235_F	238_Y	0.503	0.43
102_G	140_S	0.503	0.43
109_F	169_A	0.501	0.43
260_I	271_K	0.501	0.43
258_R	271_K	0.501	0.43
99_A	126_T	0.501	0.43
137_G	213_L	0.501	0.43
114_G	117_E	0.501	0.43
112_L	116_A	0.500	0.43

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2c42A	2	1	100	0.327	Contact Map
5c4iC	2	0.9732	100	0.478	Contact Map
4kgdA	4	0.8094	99.9	0.739	Contact Map
1v5eA	4	0.8127	99.9	0.76	Contact Map
2panA	3	0.8027	99.9	0.769	Contact Map
1ybhA	4	0.7391	99.9	0.78	Contact Map
4rjjA	5	0.6957	99.9	0.783	Contact Map
1umdA	2	0.8227	99.9	0.786	Contact Map
1w85A	2	0.8562	99.9	0.786	Contact Map
2pgnA	4	0.7592	99.9	0.787	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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