Q97V71 - SULSO - GREMLIN Contacts

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Q97V71 - Electron transfer flavoprotein, subunit beta (EtfB)

UniProt:	Q97V71	Sequences: MNIIVGFKIVPDDQMIKVVGDKLNTDAPLKVSTYDKNAIEEAIRLKEKFGGKVTGITVGNNDRKSIREALAMGVDEVIAILVKDPDVYVTAMAIAENVKTLNPDIILFSEMTTDSGTSALPAYVSELLGLPYISNVKSLKIEGNKVVADRGMVSYLETVESSLPIIVSVGGEINTPRIPSVKQIMESSKKPVKEVKFDAQSKVRIREIKPMIVNRKRIVIEESDINKAVDKLIEYLKSDGVI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	242 (234)
Sequences:	3639 (2101)
Seq/√Len:	137.4

ECOLI - YGCR FIXA YDIQ
BACSU - ETFB
HALSA - Q9HND3
SULSO - Q97V71 Q97V19

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
145_K	160_E	4.058	1.00
52_K	76_E	3.642	1.00
121_P	168_S	3.241	1.00
46_K	75_D	3.168	1.00
96_E	99_K	3.145	1.00
66_I	77_V	3.002	1.00
138_S	149_D	2.883	1.00
100_T	195_V	2.709	1.00
55_G	69_A	2.570	1.00
41_E	44_R	2.558	1.00
76_E	193_K	2.477	1.00
234_E	238_S	2.438	1.00
133_I	161_S	2.410	1.00
2_N	52_K	2.318	1.00
136_V	148_A	2.246	1.00
108_F	124_V	2.189	1.00
70_L	77_V	2.181	1.00
41_E	174_N	2.171	1.00
136_V	167_V	2.090	1.00
47_E	177_R	2.083	1.00
40_E	177_R	2.064	1.00
161_S	165_I	2.063	1.00
147_V	160_E	2.031	1.00
31_V	65_S	2.023	1.00
146_V	161_S	1.999	1.00
4_I	98_V	1.979	1.00
150_R	157_E	1.975	1.00
140_K	147_V	1.901	1.00
39_I	74_V	1.887	1.00
54_T	78_I	1.867	1.00
105_I	165_I	1.833	1.00
95_A	99_K	1.821	1.00
106_I	130_L	1.814	1.00
80_I	93_A	1.811	1.00
6_G	108_F	1.792	1.00
142_E	147_V	1.784	1.00
146_V	163_L	1.780	1.00
32_S	35_D	1.726	1.00
141_I	146_V	1.721	1.00
63_R	67_R	1.717	1.00
218_I	235_Y	1.704	1.00
91_A	127_L	1.681	1.00
54_T	76_E	1.668	1.00
111_M	116_G	1.655	1.00
55_G	74_V	1.655	1.00
61_N	81_L	1.628	1.00
231_K	234_E	1.608	1.00
149_D	158_T	1.596	1.00
220_I	228_A	1.588	1.00
80_I	97_N	1.585	1.00
100_T	193_K	1.543	1.00
85_P	93_A	1.534	1.00
169_V	173_I	1.528	1.00
228_A	231_K	1.524	1.00
4_I	103_P	1.513	1.00
98_V	106_I	1.506	1.00
53_V	74_V	1.497	1.00
125_S	132_Y	1.475	1.00
218_I	231_K	1.464	1.00
221_E	228_A	1.444	1.00
78_I	97_N	1.423	1.00
3_I	50_G	1.414	1.00
19_V	22_K	1.409	1.00
48_K	140_K	1.405	1.00
56_I	97_N	1.384	1.00
145_K	162_S	1.358	1.00
180_S	183_Q	1.353	1.00
42_A	53_V	1.344	1.00
45_L	49_F	1.329	1.00
81_L	194_E	1.328	1.00
63_R	194_E	1.320	1.00
144_N	162_S	1.310	1.00
54_T	103_P	1.307	1.00
79_A	194_E	1.258	1.00
141_I	163_L	1.250	1.00
54_T	101_L	1.242	1.00
147_V	158_T	1.242	1.00
2_N	54_T	1.234	1.00
92_M	96_E	1.229	1.00
130_L	166_I	1.213	1.00
104_D	144_N	1.201	1.00
41_E	173_I	1.193	1.00
182_K	186_E	1.186	1.00
55_G	66_I	1.173	0.99
137_K	149_D	1.156	0.99
37_N	174_N	1.133	0.99
41_E	139_L	1.129	0.99
112_T	115_S	1.128	0.99
229_V	233_I	1.126	0.99
94_I	124_V	1.110	0.99
230_D	233_I	1.107	0.99
43_I	183_Q	1.103	0.99
46_K	51_G	1.094	0.99
81_L	196_K	1.094	0.99
31_V	69_A	1.093	0.99
70_L	190_K	1.093	0.99
221_E	231_K	1.086	0.99
107_L	167_V	1.076	0.99
92_M	127_L	1.074	0.99
39_I	72_M	1.073	0.99
7_F	39_I	1.062	0.99
98_V	124_V	1.060	0.99
149_D	156_L	1.059	0.99
76_E	101_L	1.057	0.99
9_I	65_S	1.043	0.99
4_I	56_I	1.034	0.99
43_I	72_M	1.027	0.99
122_A	132_Y	1.026	0.99
235_Y	239_D	1.020	0.99
40_E	176_P	1.017	0.98
139_L	148_A	1.012	0.98
95_A	128_L	1.012	0.98
57_T	79_A	1.009	0.98
58_V	82_V	1.009	0.98
185_M	188_S	1.009	0.98
40_E	44_R	1.000	0.98
123_Y	127_L	0.997	0.98
7_F	69_A	0.995	0.98
184_I	190_K	0.994	0.98
50_G	53_V	0.990	0.98
107_L	169_V	0.987	0.98
142_E	145_K	0.986	0.98
34_Y	110_E	0.984	0.98
78_I	195_V	0.980	0.98
88_Y	92_M	0.968	0.98
133_I	148_A	0.967	0.98
96_E	100_T	0.962	0.98
60_N	79_A	0.958	0.98
58_V	90_T	0.952	0.98
63_R	79_A	0.948	0.98
89_V	201_S	0.943	0.98
43_I	47_E	0.939	0.97
41_E	138_S	0.936	0.97
131_P	165_I	0.935	0.97
93_A	197_F	0.929	0.97
112_T	116_G	0.925	0.97
103_P	130_L	0.919	0.97
86_D	202_K	0.915	0.97
37_N	172_E	0.913	0.97
6_G	124_V	0.911	0.97
95_A	124_V	0.910	0.97
108_F	166_I	0.910	0.97
4_I	101_L	0.908	0.97
7_F	65_S	0.898	0.97
152_M	155_Y	0.898	0.97
63_R	192_V	0.898	0.97
182_K	185_M	0.893	0.97
72_M	176_P	0.893	0.97
235_Y	238_S	0.887	0.96
110_E	116_G	0.877	0.96
118_S	122_A	0.876	0.96
36_K	72_M	0.875	0.96
78_I	101_L	0.872	0.96
39_I	55_G	0.854	0.96
106_I	124_V	0.852	0.96
13_D	30_K	0.849	0.95
38_A	169_V	0.849	0.95
98_V	103_P	0.848	0.95
122_A	134_S	0.848	0.95
87_V	123_Y	0.847	0.95
36_K	68_E	0.846	0.95
210_P	213_V	0.845	0.95
178_I	184_I	0.839	0.95
42_A	107_L	0.837	0.95
38_A	107_L	0.836	0.95
7_F	55_G	0.835	0.95
91_A	123_Y	0.833	0.95
231_K	235_Y	0.828	0.95
133_I	159_V	0.821	0.95
41_E	48_K	0.821	0.95
97_N	195_V	0.818	0.94
77_V	192_V	0.817	0.94
151_G	172_E	0.814	0.94
98_V	128_L	0.806	0.94
5_V	53_V	0.806	0.94
85_P	89_V	0.791	0.93
47_E	51_G	0.786	0.93
17_K	24_N	0.781	0.93
140_K	149_D	0.781	0.93
72_M	179_P	0.780	0.93
230_D	234_E	0.777	0.93
37_N	170_G	0.774	0.93
97_N	101_L	0.774	0.93
186_E	190_K	0.773	0.93
101_L	195_V	0.772	0.93
132_Y	166_I	0.770	0.92
148_A	165_I	0.767	0.92
146_V	167_V	0.767	0.92
34_Y	37_N	0.767	0.92
214_N	217_R	0.767	0.92
6_G	94_I	0.766	0.92
86_D	201_S	0.763	0.92
212_I	215_R	0.762	0.92
110_E	171_G	0.760	0.92
126_E	132_Y	0.760	0.92
105_I	146_V	0.759	0.92
30_K	113_T	0.758	0.92
139_L	146_V	0.746	0.91
205_I	208_I	0.740	0.91
133_I	146_V	0.738	0.91
31_V	68_E	0.738	0.91
86_D	89_V	0.734	0.91
29_L	62_D	0.723	0.90
187_S	190_K	0.722	0.90
68_E	72_M	0.722	0.90
89_V	200_Q	0.720	0.90
211_M	232_L	0.720	0.90
12_D	30_K	0.710	0.89
6_G	98_V	0.710	0.89
125_S	166_I	0.708	0.89
150_R	159_V	0.705	0.89
108_F	168_S	0.703	0.89
99_K	129_G	0.702	0.88
9_I	29_L	0.702	0.88
99_K	102_N	0.699	0.88
60_N	84_D	0.699	0.88
32_S	113_T	0.698	0.88
117_T	203_V	0.697	0.88
112_T	117_T	0.694	0.88
90_T	115_S	0.693	0.88
185_M	189_K	0.692	0.88
58_V	85_P	0.689	0.88
82_V	85_P	0.685	0.87
140_K	158_T	0.685	0.87
71_A	183_Q	0.684	0.87
107_L	139_L	0.683	0.87
31_V	36_K	0.681	0.87
67_R	188_S	0.681	0.87
35_D	117_T	0.679	0.87
78_I	193_K	0.677	0.87
218_I	239_D	0.674	0.86
3_I	53_V	0.674	0.86
44_R	177_R	0.674	0.86
8_K	57_T	0.673	0.86
88_Y	202_K	0.671	0.86
12_D	28_P	0.668	0.86
201_S	205_I	0.666	0.86
138_S	158_T	0.664	0.86
5_V	38_A	0.664	0.86
151_G	170_G	0.664	0.86
87_V	115_S	0.662	0.85
135_N	170_G	0.659	0.85
39_I	43_I	0.657	0.85
87_V	119_A	0.655	0.85
113_T	116_G	0.654	0.85
99_K	128_L	0.652	0.85
142_E	160_E	0.650	0.84
40_E	47_E	0.648	0.84
98_V	130_L	0.645	0.84
11_P	27_A	0.645	0.84
124_V	166_I	0.644	0.84
110_E	170_G	0.643	0.84
85_P	200_Q	0.642	0.84
39_I	169_V	0.642	0.84
56_I	94_I	0.642	0.84
58_V	80_I	0.640	0.83
88_Y	127_L	0.637	0.83
110_E	135_N	0.635	0.83
35_D	115_S	0.625	0.82
103_P	106_I	0.625	0.82
45_L	107_L	0.624	0.82
139_L	167_V	0.621	0.82
220_I	231_K	0.617	0.81
5_V	42_A	0.612	0.81
61_N	79_A	0.610	0.80
108_F	121_P	0.609	0.80
58_V	86_D	0.607	0.80
152_M	157_E	0.607	0.80
45_L	105_I	0.604	0.80
2_N	103_P	0.603	0.80
58_V	94_I	0.600	0.79
136_V	139_L	0.599	0.79
98_V	166_I	0.595	0.79
105_I	167_V	0.593	0.79
105_I	163_L	0.592	0.78
25_T	60_N	0.588	0.78
37_N	151_G	0.588	0.78
85_P	90_T	0.587	0.78
35_D	65_S	0.586	0.78
56_I	101_L	0.586	0.78
72_M	177_R	0.584	0.78
146_V	165_I	0.584	0.78
17_K	27_A	0.581	0.77
44_R	47_E	0.580	0.77
85_P	201_S	0.579	0.77
60_N	82_V	0.578	0.77
161_S	167_V	0.576	0.77
38_A	109_S	0.575	0.76
31_V	39_I	0.574	0.76
95_A	127_L	0.571	0.76
34_Y	116_G	0.571	0.76
216_K	219_V	0.570	0.76
218_I	221_E	0.568	0.76
9_I	62_D	0.568	0.76
131_P	161_S	0.567	0.75
71_A	187_S	0.564	0.75
13_D	27_A	0.563	0.75
59_G	69_A	0.563	0.75
122_A	168_S	0.562	0.75
66_I	192_V	0.562	0.75
111_M	118_S	0.561	0.75
13_D	33_T	0.555	0.74
37_N	171_G	0.554	0.74
3_I	6_G	0.552	0.74
51_G	141_I	0.552	0.74
11_P	25_T	0.552	0.74
24_N	27_A	0.551	0.73
98_V	102_N	0.550	0.73
39_I	69_A	0.549	0.73
204_R	207_E	0.546	0.73
119_A	123_Y	0.545	0.73
118_S	135_N	0.543	0.72
69_A	74_V	0.543	0.72
57_T	66_I	0.540	0.72
51_G	104_D	0.537	0.71
22_K	207_E	0.537	0.71
135_N	150_R	0.537	0.71
83_K	201_S	0.536	0.71
43_I	53_V	0.536	0.71
91_A	124_V	0.535	0.71
209_K	212_I	0.535	0.71
15_M	181_V	0.534	0.71
179_P	185_M	0.534	0.71
116_G	132_Y	0.534	0.71
212_I	216_K	0.533	0.71
45_L	51_G	0.533	0.71
28_P	181_V	0.533	0.71
191_P	194_E	0.532	0.71
33_T	116_G	0.532	0.71
93_A	195_V	0.531	0.71
9_I	59_G	0.529	0.70
90_T	117_T	0.526	0.70
67_R	190_K	0.526	0.70
235_Y	240_G	0.526	0.70
85_P	117_T	0.525	0.70
33_T	110_E	0.525	0.70
86_D	203_V	0.524	0.70
88_Y	121_P	0.522	0.69
58_V	93_A	0.516	0.68
229_V	232_L	0.515	0.68
190_K	193_K	0.514	0.68
93_A	97_N	0.513	0.68
191_P	234_E	0.512	0.68
126_E	129_G	0.511	0.68
20_G	24_N	0.507	0.67
43_I	177_R	0.506	0.67
137_K	170_G	0.503	0.67
93_A	96_E	0.502	0.66
37_N	173_I	0.501	0.66
67_R	191_P	0.501	0.66
33_T	113_T	0.500	0.66

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4l2iB	1	0.9959	100	0.207	Contact Map
1o97C	1	0.938	100	0.213	Contact Map
1efpB	1	0.9504	100	0.241	Contact Map
1efvB	1	0.9752	100	0.254	Contact Map
3ih5A	6	0.7851	100	0.602	Contact Map
4l2iA	1	0.9174	100	0.619	Contact Map
1o97D	1	0.8678	99.9	0.628	Contact Map
1efvA	1	0.8636	99.9	0.661	Contact Map
3fetA	2	0.6736	99.9	0.667	Contact Map
1efpA	1	0.843	99.9	0.671	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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