GREMLIN Database
Q97V71 - Electron transfer flavoprotein, subunit beta (EtfB)
UniProt: Q97V71 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 242 (234)
Sequences: 3639 (2101)
Seq/√Len: 137.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
145_K160_E4.0581.00
52_K76_E3.6421.00
121_P168_S3.2411.00
46_K75_D3.1681.00
96_E99_K3.1451.00
66_I77_V3.0021.00
138_S149_D2.8831.00
100_T195_V2.7091.00
55_G69_A2.5701.00
41_E44_R2.5581.00
76_E193_K2.4771.00
234_E238_S2.4381.00
133_I161_S2.4101.00
2_N52_K2.3181.00
136_V148_A2.2461.00
108_F124_V2.1891.00
70_L77_V2.1811.00
41_E174_N2.1711.00
136_V167_V2.0901.00
47_E177_R2.0831.00
40_E177_R2.0641.00
161_S165_I2.0631.00
147_V160_E2.0311.00
31_V65_S2.0231.00
146_V161_S1.9991.00
4_I98_V1.9791.00
150_R157_E1.9751.00
140_K147_V1.9011.00
39_I74_V1.8871.00
54_T78_I1.8671.00
105_I165_I1.8331.00
95_A99_K1.8211.00
106_I130_L1.8141.00
80_I93_A1.8111.00
6_G108_F1.7921.00
142_E147_V1.7841.00
146_V163_L1.7801.00
32_S35_D1.7261.00
141_I146_V1.7211.00
63_R67_R1.7171.00
218_I235_Y1.7041.00
91_A127_L1.6811.00
54_T76_E1.6681.00
111_M116_G1.6551.00
55_G74_V1.6551.00
61_N81_L1.6281.00
231_K234_E1.6081.00
149_D158_T1.5961.00
220_I228_A1.5881.00
80_I97_N1.5851.00
100_T193_K1.5431.00
85_P93_A1.5341.00
169_V173_I1.5281.00
228_A231_K1.5241.00
4_I103_P1.5131.00
98_V106_I1.5061.00
53_V74_V1.4971.00
125_S132_Y1.4751.00
218_I231_K1.4641.00
221_E228_A1.4441.00
78_I97_N1.4231.00
3_I50_G1.4141.00
19_V22_K1.4091.00
48_K140_K1.4051.00
56_I97_N1.3841.00
145_K162_S1.3581.00
180_S183_Q1.3531.00
42_A53_V1.3441.00
45_L49_F1.3291.00
81_L194_E1.3281.00
63_R194_E1.3201.00
144_N162_S1.3101.00
54_T103_P1.3071.00
79_A194_E1.2581.00
141_I163_L1.2501.00
54_T101_L1.2421.00
147_V158_T1.2421.00
2_N54_T1.2341.00
92_M96_E1.2291.00
130_L166_I1.2131.00
104_D144_N1.2011.00
41_E173_I1.1931.00
182_K186_E1.1861.00
55_G66_I1.1730.99
137_K149_D1.1560.99
37_N174_N1.1330.99
41_E139_L1.1290.99
112_T115_S1.1280.99
229_V233_I1.1260.99
94_I124_V1.1100.99
230_D233_I1.1070.99
43_I183_Q1.1030.99
46_K51_G1.0940.99
81_L196_K1.0940.99
31_V69_A1.0930.99
70_L190_K1.0930.99
221_E231_K1.0860.99
107_L167_V1.0760.99
92_M127_L1.0740.99
39_I72_M1.0730.99
7_F39_I1.0620.99
98_V124_V1.0600.99
149_D156_L1.0590.99
76_E101_L1.0570.99
9_I65_S1.0430.99
4_I56_I1.0340.99
43_I72_M1.0270.99
122_A132_Y1.0260.99
235_Y239_D1.0200.99
40_E176_P1.0170.98
139_L148_A1.0120.98
95_A128_L1.0120.98
57_T79_A1.0090.98
58_V82_V1.0090.98
185_M188_S1.0090.98
40_E44_R1.0000.98
123_Y127_L0.9970.98
7_F69_A0.9950.98
184_I190_K0.9940.98
50_G53_V0.9900.98
107_L169_V0.9870.98
142_E145_K0.9860.98
34_Y110_E0.9840.98
78_I195_V0.9800.98
88_Y92_M0.9680.98
133_I148_A0.9670.98
96_E100_T0.9620.98
60_N79_A0.9580.98
58_V90_T0.9520.98
63_R79_A0.9480.98
89_V201_S0.9430.98
43_I47_E0.9390.97
41_E138_S0.9360.97
131_P165_I0.9350.97
93_A197_F0.9290.97
112_T116_G0.9250.97
103_P130_L0.9190.97
86_D202_K0.9150.97
37_N172_E0.9130.97
6_G124_V0.9110.97
95_A124_V0.9100.97
108_F166_I0.9100.97
4_I101_L0.9080.97
7_F65_S0.8980.97
152_M155_Y0.8980.97
63_R192_V0.8980.97
182_K185_M0.8930.97
72_M176_P0.8930.97
235_Y238_S0.8870.96
110_E116_G0.8770.96
118_S122_A0.8760.96
36_K72_M0.8750.96
78_I101_L0.8720.96
39_I55_G0.8540.96
106_I124_V0.8520.96
13_D30_K0.8490.95
38_A169_V0.8490.95
98_V103_P0.8480.95
122_A134_S0.8480.95
87_V123_Y0.8470.95
36_K68_E0.8460.95
210_P213_V0.8450.95
178_I184_I0.8390.95
42_A107_L0.8370.95
38_A107_L0.8360.95
7_F55_G0.8350.95
91_A123_Y0.8330.95
231_K235_Y0.8280.95
133_I159_V0.8210.95
41_E48_K0.8210.95
97_N195_V0.8180.94
77_V192_V0.8170.94
151_G172_E0.8140.94
98_V128_L0.8060.94
5_V53_V0.8060.94
85_P89_V0.7910.93
47_E51_G0.7860.93
17_K24_N0.7810.93
140_K149_D0.7810.93
72_M179_P0.7800.93
230_D234_E0.7770.93
37_N170_G0.7740.93
97_N101_L0.7740.93
186_E190_K0.7730.93
101_L195_V0.7720.93
132_Y166_I0.7700.92
148_A165_I0.7670.92
146_V167_V0.7670.92
34_Y37_N0.7670.92
214_N217_R0.7670.92
6_G94_I0.7660.92
86_D201_S0.7630.92
212_I215_R0.7620.92
110_E171_G0.7600.92
126_E132_Y0.7600.92
105_I146_V0.7590.92
30_K113_T0.7580.92
139_L146_V0.7460.91
205_I208_I0.7400.91
133_I146_V0.7380.91
31_V68_E0.7380.91
86_D89_V0.7340.91
29_L62_D0.7230.90
187_S190_K0.7220.90
68_E72_M0.7220.90
89_V200_Q0.7200.90
211_M232_L0.7200.90
12_D30_K0.7100.89
6_G98_V0.7100.89
125_S166_I0.7080.89
150_R159_V0.7050.89
108_F168_S0.7030.89
99_K129_G0.7020.88
9_I29_L0.7020.88
99_K102_N0.6990.88
60_N84_D0.6990.88
32_S113_T0.6980.88
117_T203_V0.6970.88
112_T117_T0.6940.88
90_T115_S0.6930.88
185_M189_K0.6920.88
58_V85_P0.6890.88
82_V85_P0.6850.87
140_K158_T0.6850.87
71_A183_Q0.6840.87
107_L139_L0.6830.87
31_V36_K0.6810.87
67_R188_S0.6810.87
35_D117_T0.6790.87
78_I193_K0.6770.87
218_I239_D0.6740.86
3_I53_V0.6740.86
44_R177_R0.6740.86
8_K57_T0.6730.86
88_Y202_K0.6710.86
12_D28_P0.6680.86
201_S205_I0.6660.86
138_S158_T0.6640.86
5_V38_A0.6640.86
151_G170_G0.6640.86
87_V115_S0.6620.85
135_N170_G0.6590.85
39_I43_I0.6570.85
87_V119_A0.6550.85
113_T116_G0.6540.85
99_K128_L0.6520.85
142_E160_E0.6500.84
40_E47_E0.6480.84
98_V130_L0.6450.84
11_P27_A0.6450.84
124_V166_I0.6440.84
110_E170_G0.6430.84
85_P200_Q0.6420.84
39_I169_V0.6420.84
56_I94_I0.6420.84
58_V80_I0.6400.83
88_Y127_L0.6370.83
110_E135_N0.6350.83
35_D115_S0.6250.82
103_P106_I0.6250.82
45_L107_L0.6240.82
139_L167_V0.6210.82
220_I231_K0.6170.81
5_V42_A0.6120.81
61_N79_A0.6100.80
108_F121_P0.6090.80
58_V86_D0.6070.80
152_M157_E0.6070.80
45_L105_I0.6040.80
2_N103_P0.6030.80
58_V94_I0.6000.79
136_V139_L0.5990.79
98_V166_I0.5950.79
105_I167_V0.5930.79
105_I163_L0.5920.78
25_T60_N0.5880.78
37_N151_G0.5880.78
85_P90_T0.5870.78
35_D65_S0.5860.78
56_I101_L0.5860.78
72_M177_R0.5840.78
146_V165_I0.5840.78
17_K27_A0.5810.77
44_R47_E0.5800.77
85_P201_S0.5790.77
60_N82_V0.5780.77
161_S167_V0.5760.77
38_A109_S0.5750.76
31_V39_I0.5740.76
95_A127_L0.5710.76
34_Y116_G0.5710.76
216_K219_V0.5700.76
218_I221_E0.5680.76
9_I62_D0.5680.76
131_P161_S0.5670.75
71_A187_S0.5640.75
13_D27_A0.5630.75
59_G69_A0.5630.75
122_A168_S0.5620.75
66_I192_V0.5620.75
111_M118_S0.5610.75
13_D33_T0.5550.74
37_N171_G0.5540.74
3_I6_G0.5520.74
51_G141_I0.5520.74
11_P25_T0.5520.74
24_N27_A0.5510.73
98_V102_N0.5500.73
39_I69_A0.5490.73
204_R207_E0.5460.73
119_A123_Y0.5450.73
118_S135_N0.5430.72
69_A74_V0.5430.72
57_T66_I0.5400.72
51_G104_D0.5370.71
22_K207_E0.5370.71
135_N150_R0.5370.71
83_K201_S0.5360.71
43_I53_V0.5360.71
91_A124_V0.5350.71
209_K212_I0.5350.71
15_M181_V0.5340.71
179_P185_M0.5340.71
116_G132_Y0.5340.71
212_I216_K0.5330.71
45_L51_G0.5330.71
28_P181_V0.5330.71
191_P194_E0.5320.71
33_T116_G0.5320.71
93_A195_V0.5310.71
9_I59_G0.5290.70
90_T117_T0.5260.70
67_R190_K0.5260.70
235_Y240_G0.5260.70
85_P117_T0.5250.70
33_T110_E0.5250.70
86_D203_V0.5240.70
88_Y121_P0.5220.69
58_V93_A0.5160.68
229_V232_L0.5150.68
190_K193_K0.5140.68
93_A97_N0.5130.68
191_P234_E0.5120.68
126_E129_G0.5110.68
20_G24_N0.5070.67
43_I177_R0.5060.67
137_K170_G0.5030.67
93_A96_E0.5020.66
37_N173_I0.5010.66
67_R191_P0.5010.66
33_T113_T0.5000.66
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4l2iB 1 0.9959 100 0.207 Contact Map
1o97C 1 0.938 100 0.213 Contact Map
1efpB 1 0.9504 100 0.241 Contact Map
1efvB 1 0.9752 100 0.254 Contact Map
3ih5A 6 0.7851 100 0.602 Contact Map
4l2iA 1 0.9174 100 0.619 Contact Map
1o97D 1 0.8678 99.9 0.628 Contact Map
1efvA 1 0.8636 99.9 0.661 Contact Map
3fetA 2 0.6736 99.9 0.667 Contact Map
1efpA 1 0.843 99.9 0.671 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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