Q97V69 - SULSO - GREMLIN Contacts

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Q97V69 - Thioredoxin reductase (TrxB-2)

UniProt:	Q97V69	Sequences: MPLKTYDTIIVGAGIAGLSAALYSSRQKLSTLVLSKDLGGQLTLTDLIENYPGIESTGGLTLAQKIEKQAKKFGAEFIYGEEVKEIAQESDLFIIKGIKGEYAGRALILAFGKTPREINVPGEQEFKGKGVSYCAICDAAFFKGKPAAVIGEGEPGIEAIELLSNYANPAYYITSSSYLAGEEEIVKNVVNKPTVKILTSSRVLEIRGNSKVEELVIKRGDEILQLKVDGVIIEMGYTLKTEFLKGFVELNEKGEIIVDELGRTSREGVFAAGDVTQTPYKQAVVAAAEGVKAALSAYNYIRSKRGLPPVTVDWKAEKKKVSFRL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	325 (285)
Sequences:	61260 (44231)
Seq/√Len:	2620.0

ECOLI - AHPF TRXB STHA DLDH RCLA GSHR DHNA NORW HCAD PRET GLTD NIRB YGFT AEGA FADH YGFK
BACSU - DHNA TRXB FENR2 FENR1 YPDA DLDH2 YUMB DLDH1 DLDH3 CZCO YJLD YUTJ GLTB NASB NASD
HALSA - P82854 DLDH Q9HSN0 Q9HP48 Q9HR27 O54535
SULSO - Q97V69 Q97W27 Q97WE3 FENR Q97VD9 Q97YT2 Q97XZ3 Q97WG1 Q97Y24 Q97Z14 Q97Z19 Q97VQ4 Q97VJ3 Q97U72 Q980U1 Q97UP4 Q97UV0 Q97ZB4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
148_A	228_V	4.153	1.00
146_P	169_P	3.510	1.00
36_K	82_E	3.510	1.00
171_Y	198_L	3.287	1.00
205_E	216_V	3.118	1.00
7_D	105_R	2.955	1.00
169_P	196_K	2.953	1.00
207_R	216_V	2.939	1.00
214_E	225_Q	2.729	1.00
259_D	263_R	2.649	1.00
207_R	214_E	2.578	1.00
146_P	229_D	2.400	1.00
7_D	30_S	2.397	1.00
8_T	24_S	2.389	1.00
216_V	225_Q	2.380	1.00
148_A	173_I	2.372	1.00
9_I	34_L	2.327	1.00
116_R	238_T	2.323	1.00
202_R	218_K	2.295	1.00
121_P	205_E	2.292	1.00
204_L	218_K	2.284	1.00
20_A	108_I	2.282	1.00
32_L	78_I	2.266	1.00
249_E	257_I	2.249	1.00
6_Y	32_L	2.200	1.00
91_D	268_G	2.173	1.00
34_L	102_Y	2.152	1.00
148_A	215_L	2.113	1.00
187_K	191_N	2.112	1.00
146_P	171_Y	2.058	1.00
108_I	297_A	2.054	1.00
9_I	102_Y	1.991	1.00
204_L	216_V	1.969	1.00
9_I	95_I	1.886	1.00
88_Q	266_R	1.868	1.00
214_E	227_K	1.836	1.00
207_R	225_Q	1.835	1.00
175_S	202_R	1.803	1.00
7_D	32_L	1.802	1.00
146_P	227_K	1.746	1.00
106_A	268_G	1.712	1.00
114_T	240_K	1.711	1.00
171_Y	196_K	1.699	1.00
201_S	219_R	1.692	1.00
104_G	107_L	1.666	1.00
16_A	272_A	1.652	1.00
114_T	238_T	1.640	1.00
173_I	226_L	1.634	1.00
85_E	96_K	1.617	1.00
145_K	229_D	1.610	1.00
125_E	208_G	1.609	1.00
9_I	104_G	1.576	1.00
146_P	168_N	1.569	1.00
217_I	226_L	1.553	1.00
133_Y	136_I	1.548	1.00
87_A	90_S	1.535	1.00
294_A	298_Y	1.514	1.00
251_N	255_E	1.510	1.00
114_T	242_E	1.509	1.00
97_G	100_G	1.492	1.00
30_S	76_E	1.481	1.00
208_G	213_E	1.470	1.00
108_I	272_A	1.453	1.00
10_I	17_G	1.444	1.00
249_E	265_S	1.443	1.00
9_I	32_L	1.439	1.00
201_S	217_I	1.437	1.00
270_F	300_Y	1.436	1.00
206_I	231_V	1.428	1.00
198_L	201_S	1.417	1.00
94_I	101_E	1.392	1.00
111_F	275_V	1.392	1.00
198_L	221_D	1.385	1.00
290_G	294_A	1.384	1.00
94_I	103_A	1.380	1.00
21_A	33_V	1.373	1.00
147_A	163_L	1.369	1.00
10_I	21_A	1.331	1.00
106_A	297_A	1.327	1.00
106_A	270_F	1.326	1.00
293_A	297_A	1.311	1.00
177_S	200_S	1.308	1.00
97_G	102_Y	1.274	1.00
270_F	296_S	1.267	1.00
69_Q	73_F	1.260	1.00
132_S	136_I	1.257	1.00
8_T	108_I	1.249	1.00
171_Y	228_V	1.248	1.00
96_K	101_E	1.241	1.00
67_E	71_K	1.237	1.00
23_Y	295_L	1.233	1.00
88_Q	269_V	1.230	1.00
251_N	257_I	1.227	1.00
64_Q	68_K	1.215	1.00
58_G	61_T	1.215	1.00
13_A	35_S	1.207	1.00
119_N	123_E	1.203	1.00
263_R	267_E	1.202	1.00
87_A	94_I	1.185	1.00
178_Y	183_E	1.175	1.00
23_Y	26_R	1.151	1.00
292_K	296_S	1.149	1.00
206_I	212_V	1.148	1.00
32_L	102_Y	1.144	1.00
152_E	174_T	1.143	1.00
86_I	107_L	1.139	1.00
68_K	71_K	1.135	1.00
212_V	231_V	1.132	1.00
110_A	272_A	1.125	1.00
164_S	195_V	1.125	1.00
68_K	72_K	1.121	1.00
258_V	276_T	1.119	1.00
208_G	212_V	1.118	1.00
173_I	217_I	1.118	1.00
157_I	172_Y	1.116	1.00
8_T	29_L	1.114	1.00
27_Q	298_Y	1.110	1.00
256_I	271_A	1.108	1.00
143_K	168_N	1.107	1.00
144_G	168_N	1.090	1.00
209_N	214_E	1.089	1.00
136_I	139_A	1.087	1.00
266_R	269_V	1.084	1.00
174_T	199_T	1.083	1.00
84_K	96_K	1.082	1.00
147_A	230_G	1.079	1.00
251_N	277_Q	1.078	1.00
16_A	286_A	1.076	1.00
258_V	262_G	1.068	1.00
189_V	192_K	1.046	1.00
87_A	96_K	1.041	1.00
6_Y	9_I	1.037	1.00
180_A	184_E	1.031	1.00
92_L	103_A	1.028	1.00
93_F	97_G	1.027	1.00
164_S	169_P	1.027	1.00
129_K	133_Y	1.025	1.00
34_L	83_V	1.015	1.00
106_A	300_Y	1.015	1.00
11_V	109_L	1.006	1.00
150_I	231_V	1.001	1.00
286_A	290_G	1.000	1.00
82_E	98_I	0.999	1.00
167_A	170_A	0.998	1.00
24_S	294_A	0.998	1.00
160_I	172_Y	0.995	1.00
37_D	80_G	0.993	1.00
137_C	140_A	0.989	1.00
23_Y	27_Q	0.979	1.00
209_N	227_K	0.976	1.00
81_E	99_K	0.973	1.00
129_K	132_S	0.972	1.00
212_V	227_K	0.964	1.00
147_A	168_N	0.958	1.00
165_N	193_P	0.958	1.00
78_I	81_E	0.957	1.00
256_I	275_V	0.953	1.00
271_A	275_V	0.952	1.00
242_E	245_K	0.950	1.00
6_Y	30_S	0.946	1.00
272_A	293_A	0.943	1.00
34_L	78_I	0.940	1.00
132_S	140_A	0.936	1.00
48_I	52_P	0.932	1.00
209_N	213_E	0.931	1.00
263_R	300_Y	0.931	1.00
274_D	286_A	0.928	1.00
209_N	212_V	0.925	1.00
11_V	111_F	0.924	1.00
78_I	102_Y	0.922	1.00
20_A	272_A	0.920	1.00
27_Q	295_L	0.916	1.00
63_A	67_E	0.911	1.00
70_A	73_F	0.910	1.00
188_N	191_N	0.906	1.00
263_R	268_G	0.903	1.00
184_E	187_K	0.899	1.00
149_V	160_I	0.899	1.00
156_G	174_T	0.898	1.00
270_F	297_A	0.896	1.00
25_S	75_A	0.893	1.00
8_T	106_A	0.891	1.00
148_A	226_L	0.889	1.00
85_E	246_G	0.889	1.00
276_T	289_E	0.888	1.00
134_C	137_C	0.881	1.00
171_Y	226_L	0.880	1.00
24_S	29_L	0.873	1.00
217_I	221_D	0.873	1.00
23_Y	291_V	0.872	1.00
122_G	125_E	0.869	1.00
20_A	290_G	0.869	1.00
65_K	69_Q	0.867	1.00
262_G	293_A	0.867	1.00
184_E	188_N	0.866	1.00
258_V	271_A	0.866	1.00
262_G	292_K	0.861	1.00
201_S	218_K	0.858	1.00
32_L	104_G	0.855	1.00
7_D	103_A	0.855	1.00
22_L	26_R	0.853	1.00
7_D	29_L	0.851	1.00
203_V	215_L	0.850	1.00
6_Y	106_A	0.847	1.00
32_L	76_E	0.846	1.00
262_G	276_T	0.844	1.00
84_K	98_I	0.844	1.00
135_A	139_A	0.837	1.00
217_I	220_G	0.836	1.00
148_A	231_V	0.831	1.00
89_E	94_I	0.827	1.00
187_K	199_T	0.823	1.00
59_G	63_A	0.820	1.00
130_G	133_Y	0.816	1.00
64_Q	67_E	0.815	1.00
17_G	21_A	0.809	1.00
65_K	68_K	0.806	1.00
108_I	293_A	0.805	1.00
285_V	289_E	0.804	1.00
66_I	69_Q	0.803	1.00
150_I	235_M	0.793	1.00
134_C	138_D	0.793	1.00
208_G	211_K	0.792	1.00
150_I	233_I	0.792	1.00
188_N	192_K	0.790	1.00
179_L	199_T	0.790	1.00
24_S	297_A	0.788	1.00
107_L	269_V	0.787	1.00
261_L	296_S	0.785	1.00
198_L	226_L	0.785	1.00
145_K	168_N	0.782	1.00
206_I	215_L	0.781	1.00
152_E	179_L	0.780	1.00
29_L	298_Y	0.780	1.00
183_E	187_K	0.779	1.00
189_V	193_P	0.779	1.00
17_G	110_A	0.777	1.00
20_A	293_A	0.772	1.00
173_I	201_S	0.770	1.00
13_A	33_V	0.769	1.00
10_I	20_A	0.769	1.00
11_V	83_V	0.768	1.00
109_L	275_V	0.765	1.00
134_C	140_A	0.756	1.00
7_D	102_Y	0.750	1.00
122_G	205_E	0.748	1.00
61_T	65_K	0.748	1.00
21_A	31_T	0.748	1.00
185_I	189_V	0.746	1.00
83_V	95_I	0.745	1.00
132_S	230_G	0.744	1.00
61_T	64_Q	0.742	1.00
228_V	231_V	0.742	1.00
88_Q	91_D	0.742	1.00
173_I	198_L	0.740	1.00
150_I	203_V	0.737	1.00
182_E	185_I	0.734	1.00
106_A	301_I	0.732	1.00
293_A	296_S	0.729	1.00
271_A	276_T	0.728	1.00
8_T	297_A	0.726	1.00
21_A	75_A	0.725	1.00
198_L	217_I	0.723	1.00
218_K	221_D	0.718	1.00
146_P	228_V	0.715	1.00
153_G	236_G	0.713	1.00
25_S	31_T	0.712	1.00
41_Q	44_L	0.711	1.00
19_S	290_G	0.708	1.00
291_V	295_L	0.706	1.00
125_E	129_K	0.703	1.00
133_Y	138_D	0.702	1.00
289_E	293_A	0.702	1.00
191_N	196_K	0.702	1.00
242_E	246_G	0.701	1.00
113_K	237_Y	0.696	1.00
38_L	79_Y	0.692	1.00
69_Q	72_K	0.691	1.00
272_A	297_A	0.690	1.00
130_G	233_I	0.686	1.00
250_L	257_I	0.686	1.00
132_S	135_A	0.682	1.00
132_S	138_D	0.679	1.00
187_K	197_I	0.676	1.00
117_E	233_I	0.675	1.00
252_E	257_I	0.669	1.00
24_S	31_T	0.668	1.00
268_G	300_Y	0.667	1.00
85_E	88_Q	0.667	1.00
118_I	233_I	0.665	1.00
90_S	94_I	0.663	1.00
137_C	163_L	0.663	1.00
6_Y	105_R	0.663	1.00
164_S	193_P	0.660	1.00
161_E	165_N	0.658	1.00
7_D	104_G	0.658	1.00
185_I	188_N	0.657	1.00
80_G	98_I	0.657	1.00
40_G	43_T	0.653	1.00
117_E	124_Q	0.653	1.00
60_L	64_Q	0.651	1.00
19_S	23_Y	0.649	1.00
132_S	137_C	0.649	1.00
134_C	139_A	0.645	1.00
70_A	75_A	0.643	1.00
288_A	291_V	0.643	1.00
159_A	162_L	0.643	1.00
263_R	296_S	0.641	1.00
13_A	38_L	0.641	1.00
20_A	294_A	0.641	1.00
129_K	135_A	0.641	1.00
123_E	233_I	0.641	1.00
59_G	66_I	0.640	1.00
80_G	99_K	0.639	1.00
88_Q	93_F	0.639	1.00
272_A	290_G	0.635	1.00
159_A	232_I	0.634	1.00
43_T	46_D	0.628	1.00
257_I	265_S	0.628	1.00
151_G	236_G	0.628	1.00
270_F	293_A	0.627	1.00
178_Y	187_K	0.626	1.00
10_I	110_A	0.626	1.00
54_I	57_T	0.624	1.00
96_K	99_K	0.622	1.00
34_L	104_G	0.618	1.00
16_A	110_A	0.617	1.00
181_G	184_E	0.617	1.00
118_I	123_E	0.614	1.00
132_S	139_A	0.612	1.00
120_V	123_E	0.611	1.00
29_L	105_R	0.610	1.00
29_L	297_A	0.608	1.00
19_S	22_L	0.607	1.00
129_K	136_I	0.605	1.00
282_Q	285_V	0.605	1.00
262_G	296_S	0.604	1.00
160_I	195_V	0.602	1.00
39_G	42_L	0.601	1.00
135_A	138_D	0.600	1.00
206_I	213_E	0.600	1.00
55_E	58_G	0.598	1.00
250_L	256_I	0.598	1.00
25_S	30_S	0.594	1.00
47_L	54_I	0.593	1.00
117_E	133_Y	0.591	1.00
263_R	270_F	0.591	1.00
190_V	197_I	0.590	1.00
129_K	140_A	0.588	1.00
145_K	230_G	0.587	1.00
145_K	169_P	0.587	1.00
129_K	134_C	0.586	1.00
164_S	194_T	0.584	1.00
47_L	52_P	0.583	1.00
6_Y	76_E	0.582	1.00
257_I	260_E	0.582	1.00
93_F	266_R	0.580	1.00
19_S	287_A	0.580	1.00
34_L	97_G	0.579	1.00
174_T	179_L	0.578	1.00
62_L	65_K	0.575	1.00
81_E	97_G	0.573	1.00
201_S	221_D	0.572	1.00
109_L	243_F	0.572	1.00
44_L	47_L	0.571	1.00
142_F	145_K	0.570	1.00
133_Y	137_C	0.569	1.00
295_L	299_N	0.568	1.00
42_L	46_D	0.568	1.00
25_S	76_E	0.568	1.00
241_T	250_L	0.567	1.00
25_S	74_G	0.566	1.00
66_I	70_A	0.564	1.00
264_T	271_A	0.564	1.00
174_T	177_S	0.563	1.00
288_A	292_K	0.556	1.00
9_I	93_F	0.555	1.00
146_P	212_V	0.554	1.00
208_G	214_E	0.554	1.00
48_I	53_G	0.553	1.00
116_R	235_M	0.552	1.00
297_A	301_I	0.552	1.00
47_L	53_G	0.552	1.00
120_V	206_I	0.551	1.00
62_L	66_I	0.550	1.00
200_S	219_R	0.549	1.00
281_K	285_V	0.546	1.00
10_I	31_T	0.545	1.00
136_I	140_A	0.544	1.00
130_G	136_I	0.542	1.00
284_V	288_A	0.541	1.00
263_R	266_R	0.541	1.00
159_A	234_E	0.540	1.00
147_A	232_I	0.539	1.00
213_E	216_V	0.538	1.00
172_Y	197_I	0.538	1.00
133_Y	139_A	0.538	1.00
48_I	54_I	0.537	1.00
57_T	61_T	0.531	1.00
156_G	234_E	0.531	1.00
93_F	98_I	0.530	1.00
173_I	228_V	0.530	1.00
8_T	294_A	0.529	1.00
35_S	79_Y	0.529	1.00
129_K	137_C	0.528	1.00
277_Q	289_E	0.528	1.00
111_F	243_F	0.527	1.00
97_G	101_E	0.525	1.00
10_I	33_V	0.525	1.00
76_E	79_Y	0.525	1.00
117_E	123_E	0.523	1.00
140_A	230_G	0.522	1.00
154_E	158_E	0.517	1.00
247_F	250_L	0.513	1.00
89_E	92_L	0.511	1.00
258_V	261_L	0.511	1.00
148_A	171_Y	0.510	1.00
118_I	235_M	0.510	1.00
196_K	199_T	0.510	1.00
107_L	268_G	0.509	1.00
34_L	81_E	0.507	1.00
186_V	190_V	0.507	1.00
149_V	156_G	0.505	1.00
69_Q	74_G	0.505	1.00
141_F	144_G	0.505	1.00
282_Q	286_A	0.503	1.00
23_Y	294_A	0.502	1.00
160_I	170_A	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
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HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2q7vA	2	0.9292	100	0.279	Contact Map
3f8dA	2	0.9323	100	0.283	Contact Map
1fl2A	2	0.9292	100	0.289	Contact Map
2a87A	2	0.9446	100	0.292	Contact Map
2q0lA	2	0.92	100	0.292	Contact Map
3r9uA	2	0.92	100	0.297	Contact Map
4jnqA	2	0.9354	100	0.298	Contact Map
4gcmA	2	0.9385	100	0.301	Contact Map
3ctyA	2	0.9231	100	0.301	Contact Map
4up3A	2	0.92	100	0.302	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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