Q97V38 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97V38 - Oxydoreductase, putative

UniProt:	Q97V38	Sequences: MGSQQNPPLKVINMSSPQNTTTPQIKLDIRQGGVQHAPPFSLKANYAIITDLNKCFGCGGCQMSCKEWNTSGMFGPLPDLNPYGELDVMFWLRVLYVEVGTYPQTKVYNIPINCFHCINAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYGNRFFDYVEGVTKKCTHCFDRIYDPTLPPEERIPACIHGCMVQARIWANILDPTDPGTILFYDKGGFVMGPETGAQPASGYLPWRSKYAESDVQLLSEAEYYNVWTANGVVQLGAQGNNSTYTEGNGSNSSSNS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	293 (220)
Sequences:	277 (174)
Seq/√Len:	11.7

ECOLI - FDNH FDOH HYBA NRFC YDHX YNFG DMSB NARY NARH YDHY HYFA
BACSU - NARH
HALSA - DMSB
SULSO - Q97V38 Q97XX9 Q97V75

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
112_I	228_M	4.590	1.00
159_Y	236_P	4.349	1.00
50_T	111_P	3.368	0.98
190_E	193_P	3.299	0.97
255_L	258_A	3.285	0.97
228_M	234_A	2.913	0.94
43_K	210_L	2.873	0.94
69_N	203_A	2.788	0.93
118_I	237_A	2.612	0.90
34_V	37_A	2.489	0.88
69_N	177_C	2.430	0.87
228_M	236_P	2.414	0.86
176_H	238_S	2.410	0.86
29_I	34_V	2.343	0.85
134_R	141_L	2.309	0.84
30_R	37_A	2.176	0.80
148_I	168_E	2.077	0.77
47_A	124_E	2.035	0.75
40_F	218_I	2.034	0.75
166_Y	230_P	2.025	0.75
31_Q	34_V	2.003	0.74
151_K	164_F	2.000	0.74
29_I	32_G	1.931	0.71
29_I	40_F	1.919	0.70
159_Y	234_A	1.891	0.69
120_A	133_K	1.866	0.68
192_I	219_L	1.789	0.65
128_V	150_T	1.780	0.64
151_K	154_I	1.738	0.62
121_P	144_Y	1.701	0.61
254_L	258_A	1.680	0.60
252_V	258_A	1.659	0.59
212_P	221_Y	1.645	0.58
134_R	137_D	1.632	0.57
120_A	123_T	1.599	0.56
220_F	225_G	1.553	0.54
29_I	35_Q	1.547	0.53
41_S	198_G	1.536	0.53
91_W	94_V	1.534	0.53
183_D	190_E	1.532	0.53
126_C	147_C	1.515	0.52
126_C	153_C	1.515	0.52
147_C	153_C	1.515	0.52
137_D	177_C	1.481	0.50
133_K	140_V	1.477	0.50
213_T	218_I	1.462	0.49
154_I	171_T	1.456	0.49
54_K	211_D	1.448	0.48
144_Y	164_F	1.402	0.46
140_V	150_T	1.387	0.45
47_A	226_F	1.384	0.45
31_Q	35_Q	1.379	0.45
101_T	253_Q	1.374	0.45
123_T	131_T	1.373	0.45
100_G	103_P	1.367	0.44
160_G	193_P	1.359	0.44
90_F	93_R	1.358	0.44
180_R	197_H	1.350	0.44
139_I	148_I	1.330	0.43
228_M	233_G	1.329	0.43
29_I	33_G	1.317	0.42
225_G	241_L	1.315	0.42
50_T	226_F	1.278	0.40
45_N	202_Q	1.260	0.39
81_N	85_E	1.254	0.39
152_Y	155_Y	1.251	0.39
35_Q	42_L	1.225	0.38
181_I	191_R	1.224	0.38
226_F	237_A	1.217	0.37
229_G	246_K	1.214	0.37
38_P	231_E	1.210	0.37
32_G	39_P	1.207	0.37
48_I	151_K	1.206	0.37
126_C	149_G	1.184	0.36
149_G	153_C	1.184	0.36
69_N	175_T	1.181	0.36
209_I	221_Y	1.175	0.35
33_G	37_A	1.172	0.35
123_T	204_R	1.163	0.35
125_V	156_A	1.157	0.34
86_L	166_Y	1.154	0.34
57_G	149_G	1.137	0.34
68_W	164_F	1.116	0.33
30_R	33_G	1.108	0.32
39_P	102_Y	1.101	0.32
38_P	41_S	1.092	0.32
46_Y	145_N	1.091	0.32
49_I	213_T	1.085	0.31
48_I	176_H	1.071	0.31
222_D	225_G	1.067	0.31
152_Y	194_A	1.065	0.30
113_N	238_S	1.059	0.30
33_G	38_P	1.048	0.30
129_G	179_D	1.041	0.29
30_R	34_V	1.040	0.29
131_T	162_R	1.033	0.29
151_K	176_H	1.028	0.29
29_I	37_A	1.011	0.28
63_M	104_Q	1.002	0.28
98_E	145_N	1.000	0.28
111_P	165_D	1.000	0.28
32_G	37_A	0.993	0.28
50_T	203_A	0.993	0.28
36_H	39_P	0.993	0.28
35_Q	39_P	0.987	0.27
32_G	38_P	0.970	0.27
68_W	206_W	0.969	0.27
137_D	175_T	0.966	0.26
100_G	154_I	0.954	0.26
33_G	40_F	0.952	0.26
121_P	170_V	0.950	0.26
136_E	182_Y	0.946	0.26
58_C	177_C	0.934	0.25
30_R	40_F	0.934	0.25
46_Y	139_I	0.927	0.25
214_D	217_T	0.923	0.25
156_A	246_K	0.920	0.25
233_G	236_P	0.915	0.25
35_Q	40_F	0.906	0.24
139_I	233_G	0.901	0.24
54_K	225_G	0.900	0.24
30_R	39_P	0.900	0.24
164_F	233_G	0.893	0.24
253_Q	257_E	0.892	0.24
121_P	156_A	0.892	0.24
150_T	156_A	0.887	0.24
94_V	103_P	0.885	0.23
136_E	141_L	0.885	0.23
146_E	160_G	0.884	0.23
161_N	204_R	0.879	0.23
121_P	131_T	0.871	0.23
31_Q	36_H	0.869	0.23
252_V	255_L	0.868	0.23
46_Y	170_V	0.866	0.23
122_C	157_C	0.862	0.23
173_K	199_C	0.862	0.23
173_K	195_C	0.862	0.23
122_C	195_C	0.862	0.23
122_C	173_K	0.862	0.23
122_C	199_C	0.862	0.23
114_C	122_C	0.862	0.23
195_C	199_C	0.862	0.23
114_C	117_C	0.862	0.23
114_C	157_C	0.862	0.23
114_C	173_K	0.862	0.23
114_C	195_C	0.862	0.23
114_C	199_C	0.862	0.23
117_C	122_C	0.862	0.23
117_C	157_C	0.862	0.23
117_C	173_K	0.862	0.23
117_C	195_C	0.862	0.23
117_C	199_C	0.862	0.23
157_C	199_C	0.862	0.23
55_C	61_C	0.862	0.23
55_C	117_C	0.862	0.23
55_C	122_C	0.862	0.23
61_C	173_K	0.862	0.23
61_C	157_C	0.862	0.23
55_C	114_C	0.862	0.23
55_C	157_C	0.862	0.23
61_C	122_C	0.862	0.23
61_C	117_C	0.862	0.23
61_C	195_C	0.862	0.23
157_C	195_C	0.862	0.23
61_C	199_C	0.862	0.23
55_C	199_C	0.862	0.23
157_C	173_K	0.862	0.23
55_C	173_K	0.862	0.23
55_C	195_C	0.862	0.23
61_C	114_C	0.862	0.23
82_P	238_S	0.849	0.22
130_A	180_R	0.849	0.22
52_L	159_Y	0.847	0.22
124_E	167_V	0.845	0.22
81_N	91_W	0.834	0.22
29_I	42_L	0.832	0.22
66_K	136_E	0.831	0.22
134_R	230_P	0.829	0.22
48_I	164_F	0.829	0.22
50_T	217_T	0.828	0.21
34_V	39_P	0.823	0.21
169_G	220_F	0.817	0.21
52_L	111_P	0.816	0.21
193_P	196_I	0.810	0.21
33_G	39_P	0.806	0.21
120_A	196_I	0.806	0.21
44_A	136_E	0.805	0.21
125_V	152_Y	0.801	0.21
68_W	179_D	0.793	0.20
208_N	214_D	0.789	0.20
215_P	218_I	0.788	0.20
134_R	178_F	0.783	0.20
138_G	207_A	0.780	0.20
99_V	108_Y	0.780	0.20
209_I	217_T	0.775	0.20
249_E	252_V	0.775	0.20
70_T	144_Y	0.775	0.20
53_N	152_Y	0.773	0.20
37_A	104_Q	0.773	0.20
140_V	156_A	0.769	0.20
130_A	138_G	0.766	0.19
68_W	166_Y	0.766	0.19
146_E	165_D	0.761	0.19
52_L	226_F	0.760	0.19
60_G	241_L	0.758	0.19
49_I	225_G	0.755	0.19
208_N	211_D	0.754	0.19
111_P	159_Y	0.752	0.19
43_K	221_Y	0.752	0.19
30_R	35_Q	0.750	0.19
69_N	75_G	0.750	0.19
118_I	169_G	0.748	0.19
139_I	181_I	0.733	0.18
151_K	166_Y	0.712	0.18
142_V	163_F	0.711	0.18
64_S	82_P	0.709	0.18
68_W	144_Y	0.709	0.18
151_K	172_K	0.705	0.18
197_H	232_T	0.704	0.18
30_R	38_P	0.702	0.18
115_F	240_Y	0.697	0.17
244_R	249_E	0.695	0.17
29_I	39_P	0.693	0.17
34_V	38_P	0.691	0.17
67_E	105_T	0.681	0.17
128_V	152_Y	0.680	0.17
48_I	146_E	0.671	0.17
69_N	179_D	0.665	0.17
253_Q	256_S	0.664	0.16
44_A	214_D	0.664	0.16
29_I	104_Q	0.663	0.16
94_V	107_V	0.660	0.16
51_D	154_I	0.660	0.16
250_S	253_Q	0.659	0.16
220_F	239_G	0.655	0.16
140_V	143_D	0.652	0.16
151_K	222_D	0.650	0.16
166_Y	238_S	0.648	0.16
137_D	237_A	0.641	0.16
175_T	206_W	0.638	0.16
137_D	181_I	0.638	0.16
54_K	209_I	0.637	0.16
155_Y	165_D	0.637	0.16
146_E	193_P	0.637	0.16
127_P	169_G	0.630	0.16
209_I	227_V	0.627	0.15
90_F	167_V	0.623	0.15
61_C	65_C	0.618	0.15
65_C	122_C	0.618	0.15
65_C	199_C	0.618	0.15
65_C	157_C	0.618	0.15
65_C	114_C	0.618	0.15
65_C	195_C	0.618	0.15
65_C	173_K	0.618	0.15
55_C	65_C	0.618	0.15
65_C	117_C	0.618	0.15
150_T	171_T	0.610	0.15
118_I	238_S	0.609	0.15
117_C	158_P	0.602	0.15
55_C	158_P	0.602	0.15
61_C	158_P	0.602	0.15
122_C	158_P	0.602	0.15
114_C	158_P	0.602	0.15
158_P	199_C	0.602	0.15
158_P	195_C	0.602	0.15
158_P	173_K	0.602	0.15
125_V	155_Y	0.600	0.15
212_P	244_R	0.595	0.15
29_I	38_P	0.594	0.15
144_Y	172_K	0.593	0.15
33_G	116_H	0.593	0.15
114_C	174_C	0.591	0.15
61_C	174_C	0.591	0.15
55_C	174_C	0.591	0.15
174_C	199_C	0.591	0.15
174_C	195_C	0.591	0.15
157_C	174_C	0.591	0.15
122_C	174_C	0.591	0.15
117_C	174_C	0.591	0.15
208_N	230_P	0.591	0.15
32_G	218_I	0.587	0.14
89_M	150_T	0.587	0.14
37_A	218_I	0.583	0.14
180_R	249_E	0.581	0.14
92_L	140_V	0.580	0.14
111_P	216_G	0.578	0.14
121_P	125_V	0.577	0.14
113_N	156_A	0.572	0.14
127_P	153_C	0.569	0.14
127_P	147_C	0.569	0.14
150_T	155_Y	0.568	0.14
100_G	107_V	0.566	0.14
62_Q	81_N	0.565	0.14
61_C	138_G	0.565	0.14
55_C	138_G	0.565	0.14
138_G	157_C	0.565	0.14
114_C	138_G	0.565	0.14
122_C	138_G	0.565	0.14
117_C	138_G	0.565	0.14
138_G	199_C	0.565	0.14
138_G	195_C	0.565	0.14
138_G	173_K	0.565	0.14
90_F	107_V	0.564	0.14
142_V	162_R	0.564	0.14
155_Y	161_N	0.563	0.14
112_I	163_F	0.561	0.14
30_R	36_H	0.560	0.14
165_D	172_K	0.559	0.14
53_N	246_K	0.558	0.14
101_T	202_Q	0.552	0.14
47_A	137_D	0.549	0.14
35_Q	38_P	0.547	0.14
67_E	211_D	0.547	0.14
238_S	249_E	0.542	0.13
182_Y	234_A	0.541	0.13
32_G	40_F	0.536	0.13
46_Y	137_D	0.533	0.13
111_P	162_R	0.533	0.13
32_G	35_Q	0.532	0.13
136_E	243_W	0.530	0.13
102_Y	222_D	0.527	0.13
83_Y	160_G	0.526	0.13
216_G	219_L	0.525	0.13
42_L	81_N	0.523	0.13
50_T	206_W	0.514	0.13
33_G	36_H	0.507	0.13
219_L	225_G	0.505	0.13
33_G	42_L	0.505	0.13
115_F	125_V	0.502	0.13
57_G	203_A	0.500	0.12

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2ivfB	1	0.8362	100	0.516	Contact Map
1ti6B	2	0.7918	100	0.566	Contact Map
1q16B	2	0.8464	100	0.587	Contact Map
1kqfB	3	0.8805	100	0.596	Contact Map
1h0hB	1	0.6997	100	0.608	Contact Map
2vpzB	2	0.6553	100	0.628	Contact Map
4z3xE	2	0.5768	100	0.738	Contact Map
3mm5B	2	0.884	99.7	0.818	Contact Map
3i9v9	1	0.4642	99.4	0.861	Contact Map
1jnrB	1	0.4676	99.2	0.869	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0079 seconds.