GREMLIN Database
Q97V30 - Quinol oxidase (SoxABC), cytochrome B subunit, putative (SoxC-like)
UniProt: Q97V30 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 542 (417)
Sequences: 499 (201)
Seq/√Len: 9.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
355_T392_L5.0951.00
355_T388_V4.7631.00
184_A187_I4.5641.00
351_I392_L4.3980.99
384_P388_V4.3100.99
356_Y385_A3.7760.98
99_A130_T3.6940.98
13_D17_E3.1060.94
201_F204_A3.0860.93
423_L429_I3.0110.93
69_N73_F2.9870.92
255_I259_A2.7470.89
114_K334_R2.7120.88
48_F197_F2.6970.88
423_L427_A2.6660.87
104_F354_V2.6230.86
383_P387_I2.5700.85
71_T273_F2.4850.83
50_Y257_P2.4690.82
136_L182_V2.4690.82
301_L319_V2.4510.82
366_L378_V2.4470.82
320_I324_I2.4300.81
96_I130_T2.4280.81
170_L185_W2.4150.81
243_M246_I2.3440.79
302_Y364_G2.3190.78
99_A127_L2.2690.76
152_V156_I2.2600.76
87_S253_I2.2070.74
133_T136_L2.1810.73
363_W381_Y2.1520.72
20_G207_Y2.1500.72
106_N111_A2.1330.72
380_V384_P2.0960.70
167_I170_L2.0820.70
379_L382_L2.0820.70
243_M250_W2.0680.69
70_S74_V2.0330.68
103_M260_F1.9850.66
157_I170_L1.9570.65
45_A197_F1.9210.63
290_I302_Y1.9170.63
21_L74_V1.8920.62
132_G319_V1.8460.60
304_I360_T1.8330.59
64_A180_G1.8200.59
63_N180_G1.8130.59
388_V392_L1.8110.58
121_I331_F1.8000.58
215_V218_K1.7990.58
232_N237_R1.7800.57
156_I323_L1.7670.57
377_Q381_Y1.7580.56
167_I310_D1.7560.56
43_L245_L1.7410.55
351_I354_V1.7350.55
132_G153_G1.7040.54
131_L298_F1.7010.54
304_I318_G1.6810.53
106_N199_F1.6600.52
17_E114_K1.6530.51
280_P283_N1.6440.51
103_M253_I1.6390.51
133_T144_A1.6260.50
379_L383_P1.6260.50
387_I437_I1.6110.49
234_W239_F1.6040.49
238_N377_Q1.5920.49
320_I326_L1.5750.48
308_T313_I1.5750.48
307_F359_Q1.5750.48
124_V326_L1.5640.47
406_K409_I1.5570.47
20_G169_F1.5550.47
144_A299_L1.5460.46
155_G171_F1.5350.46
52_V320_I1.5280.46
21_L315_L1.5150.45
352_L390_L1.5090.45
52_V189_L1.4850.44
252_F257_P1.4830.44
52_V194_G1.4670.43
381_Y393_A1.4660.43
260_F285_P1.4550.42
124_V327_I1.4460.42
187_I365_D1.4450.42
299_L361_T1.4450.42
427_A431_L1.4390.42
112_Y408_T1.4210.41
71_T354_V1.4040.40
51_T197_F1.4010.40
148_S365_D1.4000.40
198_V275_N1.3930.40
9_S251_G1.3890.39
166_F169_F1.3800.39
422_S428_G1.3770.39
342_K412_I1.3740.39
144_A283_N1.3710.39
233_P338_L1.3710.39
187_I406_K1.3650.38
51_T91_G1.3650.38
94_A260_F1.3610.38
425_I431_L1.3440.38
288_A302_Y1.3440.38
78_V191_A1.3430.38
423_L431_L1.3370.37
52_V197_F1.3320.37
66_A390_L1.3290.37
78_V353_I1.3240.37
191_A239_F1.3120.36
54_T182_V1.3120.36
184_A406_K1.3060.36
305_A363_W1.3050.36
351_I355_T1.3050.36
399_T428_G1.2980.36
96_I101_I1.2970.36
130_T419_L1.2730.35
13_D21_L1.2720.35
121_I125_I1.2710.34
256_I260_F1.2600.34
77_S358_T1.2590.34
39_W106_N1.2580.34
373_P420_V1.2560.34
154_E168_P1.2550.34
122_I199_F1.2520.34
54_T87_S1.2510.34
357_L360_T1.2510.34
77_S96_I1.2490.34
406_K410_G1.2420.33
45_A51_T1.2270.33
54_T427_A1.2250.33
28_R205_E1.2250.33
56_L94_A1.2230.33
315_L360_T1.2220.33
77_S118_L1.2210.32
66_A178_D1.2180.32
160_V429_I1.2140.32
14_W19_L1.2060.32
182_V280_P1.2020.32
127_L276_P1.1980.32
415_L433_A1.1840.31
244_S247_F1.1830.31
232_N238_N1.1820.31
304_I315_L1.1820.31
318_G360_T1.1740.31
20_G405_I1.1680.30
39_W242_M1.1650.30
14_W118_L1.1620.30
260_F288_A1.1580.30
87_S212_S1.1550.30
345_V397_P1.1540.30
121_I327_I1.1460.30
348_G388_V1.1450.30
183_L187_I1.1440.29
198_V205_E1.1410.29
156_I298_F1.1390.29
124_V128_I1.1390.29
118_L386_I1.1370.29
152_V304_I1.1320.29
124_V369_G1.1310.29
103_M127_L1.1300.29
52_V191_A1.1300.29
386_I390_L1.1290.29
46_S238_N1.1290.29
156_I305_A1.1290.29
56_L406_K1.1250.29
68_Y391_G1.1200.29
39_W131_L1.1180.28
30_P33_M1.1180.28
153_G156_I1.1170.28
148_S283_N1.1130.28
37_D40_L1.1130.28
83_V258_N1.1130.28
54_T275_N1.1110.28
61_Y285_P1.1110.28
53_I104_F1.1070.28
97_I272_P1.1070.28
56_L189_L1.1040.28
436_T439_T1.1000.28
100_Y127_L1.0960.28
328_I354_V1.0930.28
10_K178_D1.0830.27
78_V273_F1.0830.27
96_I127_L1.0800.27
402_K431_L1.0760.27
52_V324_I1.0680.27
193_I436_T1.0660.27
244_S377_Q1.0650.27
68_Y192_L1.0650.27
29_T132_G1.0630.26
12_S386_I1.0590.26
393_A402_K1.0580.26
425_I429_I1.0480.26
311_V314_F1.0480.26
94_A167_I1.0440.26
393_A397_P1.0340.25
129_L188_I1.0310.25
154_E158_S1.0300.25
301_L304_I1.0290.25
156_I320_I1.0290.25
310_D386_I1.0240.25
97_I197_F1.0160.25
296_W355_T1.0080.25
324_I327_I1.0070.25
52_V56_L1.0060.25
125_I327_I1.0030.24
305_A314_F1.0000.24
106_N201_F0.9970.24
96_I99_A0.9920.24
132_G152_V0.9900.24
160_V301_L0.9900.24
50_Y201_F0.9890.24
184_A197_F0.9860.24
126_M312_V0.9860.24
78_V379_L0.9830.24
87_S180_G0.9830.24
358_T361_T0.9760.24
56_L59_L0.9750.23
100_Y296_W0.9750.23
152_V312_V0.9740.23
233_P313_I0.9730.23
374_V377_Q0.9720.23
247_F412_I0.9680.23
281_P289_H0.9680.23
237_R405_I0.9670.23
313_I317_I0.9660.23
60_L421_S0.9650.23
101_I351_I0.9650.23
15_F60_L0.9610.23
162_G187_I0.9600.23
156_I319_V0.9600.23
131_L178_D0.9580.23
322_P326_L0.9580.23
29_T33_M0.9510.23
211_P229_Q0.9490.23
281_P412_I0.9440.22
54_T290_I0.9430.22
321_I353_I0.9420.22
108_F350_G0.9410.22
367_T373_P0.9400.22
358_T392_L0.9400.22
323_L326_L0.9370.22
123_G200_H0.9320.22
78_V317_I0.9300.22
83_V199_F0.9290.22
53_I399_T0.9240.22
135_F284_S0.9190.22
280_P361_T0.9180.22
304_I319_V0.9130.22
27_F205_E0.9130.22
124_V183_L0.9100.21
178_D300_F0.9070.21
53_I198_V0.9060.21
20_G54_T0.9050.21
249_T362_I0.9040.21
281_P326_L0.9030.21
17_E193_I0.9010.21
356_Y387_I0.9000.21
56_L188_I0.8980.21
59_L317_I0.8940.21
132_G185_W0.8930.21
52_V84_V0.8840.21
207_Y238_N0.8800.21
118_L372_I0.8790.20
39_W235_W0.8750.20
156_I370_V0.8750.20
366_L373_P0.8730.20
132_G160_V0.8710.20
54_T288_A0.8660.20
133_T148_S0.8640.20
192_L355_T0.8590.20
124_V156_I0.8570.20
404_N407_G0.8560.20
254_L257_P0.8530.20
127_L354_V0.8520.20
315_L319_V0.8500.20
34_Y238_N0.8460.20
169_F233_P0.8380.19
117_E123_G0.8350.19
57_I283_N0.8350.19
12_S437_I0.8330.19
128_I198_V0.8320.19
19_L251_G0.8300.19
112_Y329_V0.8280.19
157_I198_V0.8270.19
324_I357_L0.8230.19
130_T193_I0.8190.19
377_Q424_F0.8180.19
334_R420_V0.8180.19
234_W327_I0.8180.19
87_S250_W0.8170.19
46_S242_M0.8170.19
56_L420_V0.8170.19
356_Y390_L0.8140.19
192_L273_F0.8130.19
44_V98_L0.8130.19
49_I362_I0.8110.19
153_G319_V0.8090.18
189_L428_G0.8090.18
317_I437_I0.8090.18
87_S254_L0.8080.18
33_M241_Y0.8020.18
152_V298_F0.8010.18
156_I315_L0.8000.18
179_Y393_A0.7990.18
83_V226_E0.7990.18
331_F348_G0.7960.18
253_I257_P0.7960.18
102_H123_G0.7940.18
152_V364_G0.7940.18
154_E160_V0.7930.18
84_V328_I0.7920.18
356_Y386_I0.7900.18
191_A195_L0.7890.18
32_Y243_M0.7890.18
153_G191_A0.7870.18
73_F395_I0.7860.18
156_I353_I0.7860.18
87_S184_A0.7850.18
335_T352_L0.7850.18
247_F276_P0.7830.18
343_R391_G0.7830.18
136_L185_W0.7810.18
59_L188_I0.7810.18
26_F258_N0.7790.18
304_I381_Y0.7760.18
191_A319_V0.7750.18
234_W283_N0.7750.18
68_Y256_I0.7750.18
29_T354_V0.7740.18
296_W364_G0.7730.18
203_L331_F0.7720.18
48_F194_G0.7700.17
70_S118_L0.7690.17
93_Y270_L0.7680.17
184_A325_Y0.7670.17
131_L170_L0.7670.17
56_L321_I0.7660.17
60_L184_A0.7650.17
299_L335_T0.7650.17
34_Y241_Y0.7640.17
20_G233_P0.7640.17
349_I354_V0.7630.17
49_I60_L0.7620.17
151_D400_D0.7620.17
424_F431_L0.7610.17
184_A323_L0.7610.17
64_A68_Y0.7610.17
257_P373_P0.7600.17
239_F417_F0.7570.17
54_T248_L0.7560.17
15_F317_I0.7550.17
104_F353_I0.7520.17
402_K435_P0.7510.17
11_L178_D0.7500.17
152_V314_F0.7490.17
334_R353_I0.7480.17
336_E438_L0.7470.17
66_A354_V0.7470.17
50_Y326_L0.7470.17
103_M442_V0.7460.17
50_Y428_G0.7460.17
132_G312_V0.7450.17
307_F440_V0.7450.17
284_S302_Y0.7450.17
66_A310_D0.7440.17
102_H105_R0.7430.17
103_M170_L0.7430.17
421_S431_L0.7420.17
155_G189_L0.7420.17
260_F300_F0.7410.17
30_P233_P0.7410.17
17_E171_F0.7390.17
124_V193_I0.7380.17
121_I304_I0.7380.17
343_R348_G0.7380.17
25_P54_T0.7370.17
259_A345_V0.7350.17
332_L362_I0.7340.17
44_V135_F0.7340.17
371_E395_I0.7330.17
19_L174_Y0.7330.17
53_I87_S0.7320.16
398_K404_N0.7290.16
290_I323_L0.7280.16
376_Q379_L0.7270.16
202_F205_E0.7250.16
56_L428_G0.7240.16
163_L351_I0.7230.16
369_G431_L0.7230.16
68_Y96_I0.7170.16
103_M357_L0.7160.16
163_L167_I0.7160.16
234_W301_L0.7160.16
125_I170_L0.7160.16
284_S377_Q0.7150.16
129_L192_L0.7140.16
256_I269_Q0.7140.16
156_I304_I0.7120.16
252_F383_P0.7110.16
218_K227_E0.7090.16
52_V167_I0.7090.16
26_F84_V0.7070.16
108_F177_G0.7070.16
421_S441_G0.7060.16
185_W195_L0.7050.16
70_S434_N0.7030.16
24_L30_P0.7010.16
29_T249_T0.7000.16
132_G157_I0.6990.16
17_E52_V0.6980.16
114_K397_P0.6980.16
281_P362_I0.6970.16
128_I328_I0.6960.16
152_V302_Y0.6940.16
127_L326_L0.6910.15
39_W334_R0.6900.15
325_Y345_V0.6890.15
19_L441_G0.6870.15
312_V317_I0.6860.15
318_G357_L0.6860.15
272_P299_L0.6840.15
332_L380_V0.6820.15
301_L364_G0.6820.15
34_Y232_N0.6810.15
359_Q380_V0.6800.15
312_V388_V0.6790.15
14_W298_F0.6790.15
187_I258_N0.6780.15
329_V354_V0.6780.15
217_D375_S0.6780.15
290_I366_L0.6750.15
59_L187_I0.6710.15
299_L365_D0.6680.15
348_G392_L0.6670.15
26_F30_P0.6630.15
156_I321_I0.6620.15
28_R234_W0.6610.15
114_K436_T0.6590.15
260_F397_P0.6570.15
354_V390_L0.6550.15
185_W332_L0.6550.15
352_L357_L0.6530.15
438_L441_G0.6520.15
440_V444_I0.6520.15
235_W249_T0.6520.15
433_A439_T0.6510.15
159_S331_F0.6500.15
125_I387_I0.6500.15
128_I187_I0.6490.14
83_V331_F0.6480.14
160_V319_V0.6470.14
83_V313_I0.6460.14
155_G197_F0.6440.14
77_S357_L0.6430.14
24_L205_E0.6420.14
20_G127_L0.6400.14
77_S386_I0.6390.14
43_L65_Q0.6390.14
163_L312_V0.6380.14
313_I371_E0.6380.14
276_P305_A0.6340.14
14_W386_I0.6340.14
84_V247_F0.6330.14
315_L318_G0.6320.14
63_N70_S0.6320.14
54_T84_V0.6310.14
381_Y397_P0.6300.14
100_Y104_F0.6290.14
131_L290_I0.6260.14
153_G185_W0.6240.14
153_G377_Q0.6240.14
136_L153_G0.6240.14
290_I364_G0.6240.14
87_S103_M0.6240.14
193_I345_V0.6230.14
185_W189_L0.6230.14
215_V238_N0.6230.14
125_I185_W0.6230.14
60_L325_Y0.6230.14
305_A365_D0.6220.14
387_I391_G0.6200.14
68_Y91_G0.6190.14
214_K413_T0.6180.14
10_K355_T0.6170.14
23_D191_A0.6170.14
233_P352_L0.6170.14
29_T364_G0.6160.14
296_W299_L0.6160.14
234_W364_G0.6150.14
101_I185_W0.6120.14
318_G334_R0.6110.14
194_G429_I0.6110.14
23_D343_R0.6100.14
215_V357_L0.6090.14
46_S212_S0.6070.14
151_D236_P0.6060.14
24_L275_N0.6050.14
9_S280_P0.6030.13
135_F298_F0.6030.13
10_K63_N0.5980.13
179_Y198_V0.5980.13
78_V194_G0.5980.13
160_V320_I0.5970.13
19_L255_I0.5960.13
318_G420_V0.5950.13
51_T194_G0.5940.13
194_G197_F0.5930.13
206_H283_N0.5930.13
281_P353_I0.5920.13
375_S417_F0.5920.13
49_I243_M0.5910.13
168_P174_Y0.5910.13
248_L332_L0.5850.13
195_L391_G0.5850.13
22_D355_T0.5840.13
189_L213_R0.5840.13
168_P388_V0.5810.13
351_I399_T0.5810.13
125_I128_I0.5800.13
131_L300_F0.5800.13
352_L363_W0.5790.13
24_L28_R0.5790.13
193_I298_F0.5770.13
128_I323_L0.5770.13
13_D29_T0.5760.13
188_I191_A0.5740.13
185_W300_F0.5740.13
13_D127_L0.5720.13
19_L256_I0.5710.13
59_L299_L0.5710.13
198_V255_I0.5700.13
15_F70_S0.5680.13
98_L227_E0.5670.13
329_V350_G0.5660.13
34_Y247_F0.5650.13
13_D99_A0.5650.13
247_F436_T0.5650.13
104_F326_L0.5650.13
60_L254_L0.5640.13
127_L314_F0.5630.13
17_E99_A0.5630.13
61_Y402_K0.5630.13
256_I428_G0.5630.13
207_Y377_Q0.5630.13
238_N412_I0.5620.13
352_L388_V0.5610.13
83_V254_L0.5600.13
408_T435_P0.5600.13
62_Y325_Y0.5600.13
208_G228_W0.5600.13
184_A226_E0.5600.13
25_P30_P0.5570.13
97_I422_S0.5560.13
121_I259_A0.5550.13
71_T379_L0.5550.13
152_V301_L0.5550.13
63_N437_I0.5550.13
97_I104_F0.5520.12
326_L356_Y0.5510.12
139_S236_P0.5500.12
349_I364_G0.5490.12
329_V349_I0.5470.12
166_F313_I0.5460.12
195_L198_V0.5450.12
20_G411_P0.5440.12
9_S25_P0.5430.12
211_P217_D0.5430.12
66_A433_A0.5420.12
33_M229_Q0.5420.12
13_D22_D0.5420.12
205_E441_G0.5410.12
366_L375_S0.5410.12
102_H200_H0.5390.12
380_V385_A0.5390.12
48_F94_A0.5390.12
160_V387_I0.5370.12
29_T314_F0.5360.12
332_L434_N0.5360.12
413_T422_S0.5350.12
410_G415_L0.5350.12
114_K422_S0.5330.12
52_V428_G0.5330.12
21_L332_L0.5330.12
45_A79_P0.5320.12
105_R123_G0.5290.12
227_E235_W0.5290.12
195_L315_L0.5290.12
269_Q419_L0.5280.12
101_I235_W0.5270.12
28_R207_Y0.5260.12
433_A436_T0.5250.12
171_F189_L0.5250.12
335_T358_T0.5250.12
25_P169_F0.5230.12
238_N444_I0.5210.12
339_H403_G0.5180.12
235_W318_G0.5170.12
162_G192_L0.5170.12
68_Y356_Y0.5170.12
15_F328_I0.5150.12
275_N372_I0.5110.12
114_K374_V0.5110.12
144_A206_H0.5100.12
15_F77_S0.5100.12
167_I324_I0.5100.12
43_L237_R0.5090.12
21_L192_L0.5080.12
103_M415_L0.5070.12
33_M48_F0.5070.12
45_A48_F0.5070.12
106_N202_F0.5060.12
99_A317_I0.5050.12
59_L400_D0.5050.12
52_V227_E0.5040.12
114_K122_I0.5040.12
96_I205_E0.5040.12
8_S193_I0.5040.12
118_L121_I0.5030.12
153_G201_F0.5030.12
133_T283_N0.5030.12
322_P349_I0.5030.12
149_A306_D0.5020.11
258_N342_K0.5000.11
215_V439_T0.5000.11
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2qjyA 2 0.7232 100 0.574 Contact Map
3cx5C 2 0.6882 100 0.609 Contact Map
1pp9C 2 0.6624 100 0.624 Contact Map
4ogqA 2 0.3782 100 0.722 Contact Map
4ogqB 1 0.2897 99.8 0.905 Contact Map
4gd3A 2 0.2915 95.7 0.969 Contact Map
1kqfC 3 0.3192 95 0.97 Contact Map
4e0tA 4 0.1199 29.7 0.984 Contact Map
4ld7A 5 0.131 17.1 0.986 Contact Map
3vouA 4 0.2325 13.8 0.987 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0129 seconds.