Q97V25 - SULSO - GREMLIN Contacts

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Q97V25 - Transposase ISC1316

UniProt:	Q97V25	Sequences: MPTLGFRFRAYTDEQTLRALKAQLKLACKIYNTLRWADIYFYQRDGKGLTQTELRQLALDLRKQDDEYKQLYSQVVQQIADRYYEAKKRFFEGLARFPKEKKPHKYYSLVYTQSGWKILHVREIRKGSKKNKKKLITLKLSNLGTFKVIVHRDFPLDKVKRVVVKLTRSERIYITFVVEGYEFPKLPNTGKVVAIDVGVEKLLVTPDGEYFPNLRPLEKALWKVKHLHRELSRKKFLSNNWFKAKVKLARAYEHLKNLRSDLYMKLGKWFAEHYDVVVMEGIHAKQLVGKSLRSLRRRLSDVGFGELRDVLKYQLEKYGKKLILVNPAYTSKTCARCGYVKNDLSLSDRVFVCPNCGWIADRDYNASLNILKGAGSERSLVPVELRPLPVPALRYWHGRAVKQEAPSFMRG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	411 (354)
Sequences:	4519 (2910)
Seq/√Len:	154.7

ECOLI - INSQ
HALSA - Q9HSW9 Q9HHJ9 Q9HM87 Q9HHG8 Q9HSW7 Q9HSD4 Q9HSZ6 Q9HHU6 Q9HSY4 Q9HHX8
SULSO - Q97V25 Q97V47 Q97XQ8 Q97YI2 Q97Y44 Q97XP1 Q97YW4 Q97XA4 Q97V53 Q97YI5 Q97Z61 Q97U51 Q97YU1 Q97U68 Q97XQ0 Q97Y48 Q97XB6 Q97UQ8 Q97YW9 Q97Y67 Q97WY6 Q97X39 Q97WZ3 Q7LXD9 Q7LXH2 Q7LXH6 Q97YF7 Q97U09 Q7LX59 Q7LX75 Y2105 Q97YK6 Q7LXH9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
261_D	265_K	5.515	1.00
283_H	286_Q	4.342	1.00
335_A	365_N	4.285	1.00
315_L	322_L	3.639	1.00
278_V	374_A	3.033	1.00
308_R	324_L	2.970	1.00
202_L	307_L	2.970	1.00
279_M	311_L	2.883	1.00
268_K	272_E	2.778	1.00
345_S	348_D	2.765	1.00
306_E	310_V	2.740	1.00
162_V	174_I	2.531	1.00
288_V	300_S	2.481	1.00
221_L	297_R	2.468	1.00
306_E	309_D	2.418	1.00
333_T	340_V	2.372	1.00
329_Y	332_K	2.324	1.00
271_A	315_L	2.317	1.00
312_K	324_L	2.295	1.00
307_L	311_L	2.282	1.00
325_V	370_I	2.269	1.00
373_G	376_S	2.200	1.00
227_L	244_A	2.128	1.00
36_W	40_Y	2.122	1.00
264_M	313_Y	2.118	1.00
277_V	315_L	2.116	1.00
332_K	344_L	2.084	1.00
352_V	359_I	2.077	1.00
337_C	356_C	2.069	1.00
160_K	179_E	2.068	1.00
279_M	322_L	2.064	1.00
13_D	16_T	2.046	1.00
264_M	310_V	2.039	1.00
39_I	97_F	2.016	1.00
334_C	337_C	2.015	1.00
330_T	370_I	2.013	1.00
293_R	296_R	2.010	1.00
220_A	258_L	1.987	1.00
267_G	310_V	1.903	1.00
260_S	306_E	1.894	1.00
349_R	362_R	1.888	1.00
202_L	262_L	1.887	1.00
337_C	353_C	1.879	1.00
34_L	80_A	1.864	1.00
353_C	356_C	1.842	1.00
334_C	356_C	1.827	1.00
312_K	316_E	1.826	1.00
263_Y	310_V	1.824	1.00
244_A	248_L	1.811	1.00
51_Q	55_R	1.796	1.00
52_T	55_R	1.790	1.00
275_D	320_K	1.787	1.00
21_K	172_I	1.786	1.00
336_R	358_W	1.775	1.00
264_M	267_G	1.759	1.00
264_M	314_Q	1.750	1.00
51_Q	81_D	1.731	1.00
239_N	242_F	1.725	1.00
334_C	353_C	1.701	1.00
351_F	360_A	1.691	1.00
35_R	83_Y	1.683	1.00
22_A	70_Q	1.663	1.00
279_M	324_L	1.628	1.00
9_R	171_R	1.615	1.00
195_I	203_L	1.608	1.00
138_L	174_I	1.595	1.00
263_Y	306_E	1.575	1.00
344_L	348_D	1.570	1.00
281_G	324_L	1.565	1.00
82_R	110_V	1.549	1.00
230_E	234_K	1.543	1.00
29_K	67_E	1.533	1.00
20_L	172_I	1.532	1.00
234_K	244_A	1.526	1.00
242_F	245_K	1.507	1.00
89_R	95_A	1.503	1.00
231_L	245_K	1.501	1.00
18_R	22_A	1.500	1.00
279_M	308_R	1.494	1.00
267_G	313_Y	1.493	1.00
346_L	349_R	1.479	1.00
74_Q	112_T	1.476	1.00
341_K	351_F	1.466	1.00
17_L	21_K	1.454	1.00
351_F	358_W	1.449	1.00
350_V	359_I	1.447	1.00
74_Q	113_Q	1.440	1.00
341_K	344_L	1.432	1.00
52_T	56_Q	1.418	1.00
280_E	327_P	1.409	1.00
204_V	364_Y	1.399	1.00
368_L	372_K	1.389	1.00
192_V	371_L	1.383	1.00
84_Y	88_K	1.368	1.00
201_K	204_V	1.359	1.00
267_G	314_Q	1.352	1.00
193_V	205_T	1.340	1.00
51_Q	80_A	1.336	1.00
237_L	241_W	1.334	1.00
88_K	92_E	1.332	1.00
205_T	209_E	1.326	1.00
24_L	172_I	1.326	1.00
312_K	322_L	1.322	1.00
34_L	83_Y	1.311	1.00
224_V	248_L	1.308	1.00
5_G	175_T	1.297	1.00
171_R	253_E	1.293	1.00
227_L	230_E	1.290	1.00
223_K	227_L	1.270	1.00
169_S	253_E	1.268	1.00
267_G	307_L	1.262	1.00
299_L	304_F	1.260	1.00
339_Y	354_P	1.257	1.00
220_A	255_L	1.252	1.00
87_K	97_F	1.248	1.00
335_A	368_L	1.228	1.00
346_L	362_R	1.224	1.00
39_I	43_Q	1.215	1.00
253_E	257_N	1.213	1.00
224_V	252_Y	1.205	1.00
195_I	205_T	1.193	1.00
269_W	273_H	1.191	1.00
271_A	318_Y	1.188	1.00
231_L	248_L	1.185	1.00
193_V	274_Y	1.179	1.00
227_L	251_A	1.176	1.00
14_E	17_L	1.174	1.00
55_R	81_D	1.172	1.00
55_R	80_A	1.171	1.00
50_T	53_E	1.169	1.00
38_D	54_L	1.161	1.00
341_K	354_P	1.160	1.00
332_K	342_N	1.154	1.00
283_H	327_P	1.150	1.00
37_A	57_L	1.149	1.00
58_A	80_A	1.138	1.00
263_Y	307_L	1.136	1.00
360_A	368_L	1.130	1.00
78_Q	112_T	1.130	1.00
310_V	313_Y	1.126	1.00
197_V	304_F	1.119	1.00
192_V	276_V	1.111	0.99
167_T	171_R	1.110	0.99
268_K	318_Y	1.109	0.99
85_E	89_R	1.109	0.99
167_T	170_E	1.109	0.99
314_Q	317_K	1.104	0.99
199_V	302_V	1.097	0.99
231_L	244_A	1.094	0.99
260_S	310_V	1.092	0.99
189_T	275_D	1.088	0.99
335_A	360_A	1.087	0.99
137_T	145_T	1.085	0.99
78_Q	81_D	1.084	0.99
27_A	79_I	1.084	0.99
12_T	16_T	1.078	0.99
345_S	349_R	1.073	0.99
332_K	340_V	1.071	0.99
325_V	373_G	1.068	0.99
364_Y	368_L	1.066	0.99
267_G	311_L	1.065	0.99
62_R	76_V	1.059	0.99
263_Y	267_G	1.058	0.99
330_T	373_G	1.054	0.99
345_S	362_R	1.052	0.99
140_L	164_V	1.048	0.99
288_V	296_R	1.047	0.99
90_F	97_F	1.046	0.99
228_H	232_S	1.046	0.99
165_K	175_T	1.038	0.99
210_Y	361_D	1.036	0.99
56_Q	59_L	1.035	0.99
194_A	371_L	1.035	0.99
272_E	318_Y	1.027	0.99
271_A	277_V	1.027	0.99
271_A	320_K	1.026	0.99
241_W	245_K	1.016	0.99
332_K	343_D	1.014	0.99
31_Y	79_I	1.011	0.99
72_Y	75_V	0.995	0.99
284_A	305_G	0.984	0.99
6_F	178_V	0.983	0.99
58_A	77_Q	0.978	0.99
26_L	67_E	0.978	0.99
197_V	308_R	0.977	0.99
309_D	312_K	0.977	0.99
333_T	373_G	0.975	0.99
167_T	253_E	0.968	0.99
360_A	364_Y	0.963	0.99
335_A	358_W	0.957	0.98
344_L	351_F	0.955	0.98
111_Y	114_S	0.951	0.98
227_L	248_L	0.950	0.98
117_K	139_K	0.948	0.98
110_V	161_R	0.947	0.98
278_V	370_I	0.936	0.98
89_R	94_L	0.936	0.98
25_K	28_C	0.934	0.98
206_P	210_Y	0.932	0.98
349_R	361_D	0.932	0.98
197_V	203_L	0.931	0.98
325_V	374_A	0.929	0.98
35_R	87_K	0.924	0.98
335_A	366_A	0.923	0.98
150_V	153_D	0.918	0.98
281_G	327_P	0.916	0.98
89_R	92_E	0.916	0.98
256_K	260_S	0.912	0.98
82_R	163_V	0.910	0.98
201_K	210_Y	0.910	0.98
41_F	45_D	0.909	0.98
192_V	375_G	0.906	0.98
348_D	362_R	0.905	0.98
339_Y	355_N	0.900	0.98
31_Y	83_Y	0.898	0.98
315_L	320_K	0.894	0.98
227_L	247_K	0.894	0.98
231_L	241_W	0.893	0.98
29_K	33_T	0.891	0.98
31_Y	86_A	0.887	0.98
77_Q	81_D	0.887	0.98
228_H	248_L	0.882	0.97
348_D	351_F	0.880	0.97
117_K	120_H	0.879	0.97
8_F	174_I	0.874	0.97
263_Y	303_G	0.873	0.97
224_V	255_L	0.872	0.97
251_A	255_L	0.869	0.97
341_K	345_S	0.866	0.97
254_H	258_L	0.865	0.97
344_L	362_R	0.863	0.97
270_F	277_V	0.862	0.97
295_L	299_L	0.861	0.97
74_Q	78_Q	0.858	0.97
139_K	145_T	0.858	0.97
116_W	120_H	0.856	0.97
42_Y	87_K	0.855	0.97
350_V	360_A	0.851	0.97
234_K	240_N	0.850	0.97
164_V	174_I	0.848	0.97
247_K	250_R	0.845	0.97
224_V	232_S	0.844	0.97
327_P	330_T	0.844	0.97
78_Q	110_V	0.841	0.97
41_F	49_L	0.840	0.97
228_H	252_Y	0.840	0.97
36_W	100_E	0.837	0.96
12_T	20_L	0.836	0.96
39_I	87_K	0.836	0.96
276_V	321_K	0.836	0.96
201_K	212_P	0.834	0.96
226_H	230_E	0.834	0.96
163_V	175_T	0.833	0.96
40_Y	44_R	0.833	0.96
34_L	58_A	0.833	0.96
335_A	372_K	0.833	0.96
68_Y	76_V	0.831	0.96
373_G	377_E	0.827	0.96
225_K	228_H	0.822	0.96
216_P	258_L	0.818	0.96
351_F	362_R	0.817	0.96
17_L	172_I	0.817	0.96
192_V	278_V	0.817	0.96
281_G	308_R	0.813	0.96
368_L	371_L	0.812	0.96
33_T	37_A	0.811	0.96
199_V	288_V	0.809	0.96
110_V	163_V	0.808	0.96
323_I	374_A	0.807	0.96
232_S	248_L	0.807	0.96
203_L	266_L	0.806	0.96
34_L	54_L	0.806	0.96
231_L	234_K	0.805	0.96
10_A	174_I	0.802	0.96
336_R	368_L	0.798	0.95
137_T	140_L	0.797	0.95
30_I	79_I	0.794	0.95
204_V	210_Y	0.791	0.95
217_L	220_A	0.791	0.95
59_L	62_R	0.791	0.95
203_L	211_F	0.791	0.95
333_T	369_N	0.786	0.95
59_L	73_S	0.785	0.95
268_K	314_Q	0.784	0.95
293_R	300_S	0.783	0.95
262_L	266_L	0.782	0.95
193_V	206_P	0.782	0.95
366_A	369_N	0.782	0.95
216_P	220_A	0.782	0.95
365_N	369_N	0.775	0.95
190_G	275_D	0.768	0.94
199_V	298_R	0.767	0.94
115_G	141_S	0.765	0.94
329_Y	373_G	0.763	0.94
339_Y	342_N	0.761	0.94
8_F	152_R	0.761	0.94
90_F	98_P	0.759	0.94
282_I	327_P	0.759	0.94
203_L	307_L	0.758	0.94
211_F	262_L	0.756	0.94
111_Y	116_W	0.756	0.94
245_K	249_A	0.754	0.94
209_E	269_W	0.754	0.94
200_E	204_V	0.753	0.94
364_Y	367_S	0.752	0.94
278_V	371_L	0.752	0.94
71_L	74_Q	0.748	0.94
266_L	269_W	0.745	0.93
161_R	177_V	0.745	0.93
72_Y	111_Y	0.744	0.93
38_D	84_Y	0.744	0.93
305_G	309_D	0.743	0.93
55_R	59_L	0.742	0.93
278_V	323_I	0.741	0.93
93_G	96_R	0.737	0.93
193_V	277_V	0.737	0.93
104_H	107_Y	0.736	0.93
74_Q	114_S	0.734	0.93
213_N	302_V	0.729	0.93
277_V	311_L	0.729	0.93
23_Q	27_A	0.727	0.93
19_A	23_Q	0.725	0.92
286_Q	327_P	0.724	0.92
78_Q	82_R	0.720	0.92
276_V	323_I	0.718	0.92
332_K	341_K	0.716	0.92
25_K	29_K	0.714	0.92
5_G	177_V	0.711	0.92
26_L	29_K	0.710	0.92
220_A	251_A	0.710	0.92
114_S	117_K	0.710	0.92
9_R	173_Y	0.707	0.92
37_A	54_L	0.704	0.91
188_N	191_K	0.703	0.91
59_L	63_K	0.696	0.91
83_Y	87_K	0.696	0.91
332_K	345_S	0.693	0.91
80_A	84_Y	0.692	0.91
191_K	275_D	0.692	0.91
139_K	143_L	0.691	0.91
74_Q	77_Q	0.689	0.90
284_A	304_F	0.689	0.90
272_E	276_V	0.686	0.90
213_N	216_P	0.686	0.90
220_A	254_H	0.685	0.90
343_D	348_D	0.685	0.90
158_K	179_E	0.684	0.90
196_D	363_D	0.684	0.90
138_L	162_V	0.684	0.90
230_E	233_R	0.684	0.90
7_R	165_K	0.681	0.90
225_K	229_R	0.679	0.90
135_L	140_L	0.679	0.90
206_P	364_Y	0.678	0.90
329_Y	333_T	0.678	0.90
26_L	71_L	0.674	0.89
22_A	26_L	0.671	0.89
315_L	318_Y	0.670	0.89
53_E	56_Q	0.669	0.89
111_Y	140_L	0.666	0.89
311_L	322_L	0.665	0.89
202_L	302_V	0.664	0.89
341_K	362_R	0.664	0.89
344_L	349_R	0.661	0.89
346_L	361_D	0.660	0.88
109_L	113_Q	0.659	0.88
329_Y	340_V	0.659	0.88
225_K	232_S	0.658	0.88
79_I	83_Y	0.655	0.88
255_L	301_D	0.655	0.88
38_D	87_K	0.653	0.88
42_Y	46_G	0.651	0.88
148_V	151_H	0.650	0.88
20_L	24_L	0.650	0.88
140_L	146_F	0.649	0.88
270_F	274_Y	0.648	0.88
87_K	91_F	0.648	0.88
26_L	68_Y	0.646	0.87
186_L	189_T	0.644	0.87
224_V	228_H	0.643	0.87
230_E	244_A	0.641	0.87
229_R	232_S	0.641	0.87
259_R	301_D	0.639	0.87
191_K	207_D	0.638	0.87
71_L	76_V	0.637	0.87
87_K	90_F	0.637	0.87
120_H	136_I	0.637	0.87
331_S	345_S	0.635	0.87
207_D	274_Y	0.633	0.86
60_D	64_Q	0.633	0.86
370_I	373_G	0.633	0.86
23_Q	71_L	0.630	0.86
374_A	378_R	0.629	0.86
218_E	221_L	0.627	0.86
51_Q	54_L	0.627	0.86
144_G	147_K	0.626	0.86
313_Y	317_K	0.622	0.85
288_V	293_R	0.621	0.85
19_A	22_A	0.621	0.85
274_Y	277_V	0.619	0.85
372_K	377_E	0.619	0.85
74_Q	115_G	0.618	0.85
217_L	221_L	0.615	0.85
15_Q	18_R	0.615	0.85
14_E	18_R	0.614	0.85
12_T	146_F	0.612	0.84
11_Y	149_I	0.611	0.84
37_A	40_Y	0.611	0.84
37_A	41_F	0.611	0.84
336_R	360_A	0.611	0.84
278_V	373_G	0.610	0.84
286_Q	299_L	0.610	0.84
37_A	61_L	0.608	0.84
331_S	344_L	0.603	0.84
12_T	17_L	0.601	0.83
198_G	204_V	0.600	0.83
360_A	365_N	0.599	0.83
242_F	246_V	0.598	0.83
42_Y	45_D	0.597	0.83
240_N	243_K	0.596	0.83
238_S	241_W	0.595	0.83
288_V	294_S	0.595	0.83
139_K	142_N	0.595	0.83
76_V	79_I	0.589	0.82
200_E	349_R	0.589	0.82
186_L	320_K	0.589	0.82
333_T	351_F	0.587	0.82
266_L	307_L	0.587	0.82
6_F	152_R	0.587	0.82
111_Y	115_G	0.586	0.82
20_L	109_L	0.585	0.82
341_K	348_D	0.584	0.82
260_S	264_M	0.583	0.82
308_R	312_K	0.582	0.81
210_Y	364_Y	0.582	0.81
23_Q	111_Y	0.582	0.81
226_H	229_R	0.581	0.81
218_E	297_R	0.580	0.81
202_L	267_G	0.577	0.81
296_R	300_S	0.576	0.81
48_G	84_Y	0.575	0.81
21_K	167_T	0.575	0.81
252_Y	256_K	0.573	0.80
252_Y	259_R	0.571	0.80
287_L	299_L	0.570	0.80
344_L	347_S	0.568	0.80
92_E	95_A	0.568	0.80
211_F	269_W	0.566	0.80
7_R	260_S	0.564	0.79
81_D	112_T	0.564	0.79
45_D	48_G	0.562	0.79
62_R	65_D	0.562	0.79
75_V	109_L	0.561	0.79
218_E	298_R	0.560	0.79
116_W	141_S	0.560	0.79
229_R	233_R	0.559	0.79
211_F	266_L	0.557	0.79
263_Y	266_L	0.557	0.79
10_A	148_V	0.557	0.79
57_L	61_L	0.557	0.79
194_A	367_S	0.557	0.79
286_Q	295_L	0.557	0.79
72_Y	113_Q	0.556	0.78
171_R	257_N	0.555	0.78
49_L	54_L	0.555	0.78
194_A	206_P	0.555	0.78
15_Q	19_A	0.554	0.78
220_A	224_V	0.554	0.78
86_A	98_P	0.553	0.78
33_T	67_E	0.553	0.78
310_V	314_Q	0.553	0.78
72_Y	112_T	0.552	0.78
7_R	173_Y	0.552	0.78
333_T	338_G	0.551	0.78
43_Q	46_G	0.550	0.78
288_V	299_L	0.549	0.78
36_W	39_I	0.548	0.77
42_Y	91_F	0.547	0.77
59_L	80_A	0.547	0.77
202_L	263_Y	0.546	0.77
47_K	53_E	0.546	0.77
140_L	143_L	0.546	0.77
73_S	112_T	0.546	0.77
5_G	165_K	0.543	0.77
339_Y	351_F	0.543	0.77
119_L	139_K	0.541	0.76
38_D	41_F	0.541	0.76
170_E	253_E	0.540	0.76
8_F	150_V	0.539	0.76
33_T	61_L	0.536	0.76
197_V	284_A	0.535	0.76
333_T	342_N	0.534	0.76
257_N	260_S	0.533	0.75
326_N	329_Y	0.532	0.75
23_Q	72_Y	0.532	0.75
51_Q	56_Q	0.530	0.75
198_G	201_K	0.529	0.75
303_G	306_E	0.529	0.75
22_A	25_K	0.527	0.75
115_G	118_I	0.526	0.74
38_D	48_G	0.524	0.74
200_E	361_D	0.523	0.74
268_K	271_A	0.522	0.74
7_R	175_T	0.522	0.74
72_Y	109_L	0.522	0.74
75_V	111_Y	0.520	0.74
31_Y	87_K	0.520	0.74
230_E	247_K	0.517	0.73
351_F	354_P	0.515	0.73
150_V	154_F	0.515	0.73
102_K	105_K	0.515	0.73
191_K	274_Y	0.512	0.73
112_T	116_W	0.512	0.73
196_D	331_S	0.512	0.73
225_K	293_R	0.511	0.72
136_I	150_V	0.511	0.72
22_A	71_L	0.511	0.72
38_D	42_Y	0.511	0.72
372_K	375_G	0.509	0.72
23_Q	109_L	0.507	0.72
352_V	358_W	0.507	0.72
30_I	76_V	0.506	0.72
237_L	242_F	0.505	0.72
48_G	54_L	0.504	0.71
328_A	332_K	0.504	0.71
295_L	298_R	0.503	0.71
217_L	297_R	0.503	0.71
331_S	341_K	0.502	0.71
278_V	375_G	0.502	0.71
232_S	244_A	0.500	0.71
241_W	244_A	0.500	0.71

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1nu0A	1	0.3163	92.3	0.938	Contact Map
1vhxA	2	0.3333	91.7	0.939	Contact Map
4aybP	1	0.1046	88.1	0.943	Contact Map
1iv0A	1	0.236	87.2	0.944	Contact Map
1ffkW	1	0.1752	86.3	0.945	Contact Map
1qypA	1	0.1119	84.3	0.946	Contact Map
2k4xA	1	0.1338	83.7	0.947	Contact Map
1vq8Z	1	0.1606	80.8	0.948	Contact Map
3j20Y	1	0.1217	80.3	0.949	Contact Map
1vd4A	1	0.1363	78.1	0.95	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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