Q97V20 - SULSO - GREMLIN Contacts

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Q97V20 - 2-oxoacid--ferredoxin oxidoreductase, beta chain

UniProt:	Q97V20	Sequences: MFKKEKGGWFYMAGLKVEWNDWCPGCGNFGILSAEQQAIQELGLDPKKVVLVSGIGCSGKIPHFIRLPASGVHTLHGRALTFAIGIKLANPSLEVIVNGGDGDQLGIGVGHFVSAGRRNVDLTVIVHNNGVYGLTKGQASPTLKLGVKTKSLPKPNINSDINPIALAISSGYTFVARGYAYDVKHLKEIIKKAIKHKGLAMIDVLQPCPTYNDIHTKEYYDKRVYKLDEDPSWDPIVKKPEEMDDKMSKAILKSMEWGDRIPIGIFYQNELVSTYEQRIAERSPSYLDNPPAHDVIEFEGKPTTDVEDILKERRVT	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	316 (269)
Sequences:	2406 (1221)
Seq/√Len:	74.4

ECOLI - NIFJ
HALSA - F2Z6I7 Q9HRZ6
SULSO - Q97V20 Q7LX68 Q97V79 Q97YV0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
121_D	197_K	5.532	1.00
123_T	200_A	5.120	1.00
164_I	237_V	4.066	1.00
178_G	186_L	3.889	1.00
115_A	122_L	2.947	1.00
218_E	221_D	2.744	1.00
126_V	201_M	2.738	1.00
50_V	86_I	2.728	1.00
193_A	202_I	2.684	1.00
195_K	242_E	2.659	1.00
191_K	195_K	2.632	1.00
178_G	189_I	2.594	1.00
17_V	61_I	2.554	1.00
116_G	167_A	2.342	1.00
32_L	98_N	2.268	1.00
52_V	86_I	2.183	1.00
79_A	97_V	2.130	1.00
83_A	97_V	2.096	1.00
97_V	122_L	2.096	1.00
143_L	147_V	2.091	1.00
35_E	190_I	2.065	1.00
128_N	203_D	1.991	1.00
125_I	204_V	1.970	1.00
185_H	189_I	1.950	1.00
285_S	288_D	1.948	1.00
283_S	287_L	1.916	1.00
162_N	165_A	1.907	1.00
116_G	199_L	1.819	1.00
190_I	202_I	1.797	1.00
177_R	203_D	1.777	1.00
173_T	196_H	1.769	1.00
258_G	261_I	1.767	1.00
99_G	124_V	1.763	1.00
104_Q	124_V	1.733	1.00
284_P	288_D	1.731	1.00
261_I	264_G	1.728	1.00
35_E	98_N	1.713	1.00
225_Y	228_D	1.690	1.00
224_V	228_D	1.688	1.00
213_D	264_G	1.679	1.00
28_N	127_H	1.671	1.00
130_G	160_D	1.648	1.00
185_H	263_I	1.630	1.00
197_K	277_Q	1.617	1.00
123_T	194_I	1.601	0.99
96_I	123_T	1.589	0.99
99_G	104_Q	1.569	0.99
167_A	201_M	1.562	0.99
226_K	229_E	1.555	0.99
125_I	190_I	1.554	0.99
33_S	37_Q	1.533	0.99
178_G	190_I	1.533	0.99
83_A	95_V	1.529	0.99
32_L	61_I	1.523	0.99
124_V	199_L	1.518	0.99
192_K	268_Q	1.516	0.99
178_G	185_H	1.496	0.99
145_L	159_S	1.476	0.99
32_L	127_H	1.472	0.99
144_K	147_V	1.456	0.99
49_V	94_E	1.448	0.99
74_T	82_F	1.443	0.99
195_K	240_P	1.437	0.99
282_R	285_S	1.432	0.99
90_N	93_L	1.413	0.99
285_S	289_N	1.413	0.99
50_V	95_V	1.412	0.99
96_I	194_I	1.409	0.99
216_T	227_L	1.389	0.98
164_I	175_V	1.373	0.98
31_I	206_Q	1.365	0.98
53_S	71_G	1.323	0.98
243_M	248_S	1.321	0.98
52_V	83_A	1.317	0.98
240_P	243_M	1.308	0.98
287_L	290_P	1.304	0.98
94_E	194_I	1.303	0.98
86_I	95_V	1.292	0.98
55_I	73_H	1.291	0.98
119_N	199_L	1.286	0.97
287_L	291_P	1.273	0.97
207_P	219_Y	1.273	0.97
264_G	267_Y	1.272	0.97
167_A	175_V	1.272	0.97
281_E	284_P	1.271	0.97
129_N	133_G	1.265	0.97
186_L	190_I	1.262	0.97
50_V	90_N	1.260	0.97
35_E	125_I	1.256	0.97
178_G	204_V	1.256	0.97
265_I	268_Q	1.249	0.97
267_Y	276_E	1.245	0.97
126_V	163_P	1.245	0.97
72_V	82_F	1.245	0.97
279_I	283_S	1.236	0.97
113_V	161_I	1.227	0.97
224_V	227_L	1.221	0.97
48_K	92_S	1.206	0.96
278_R	281_E	1.205	0.96
125_I	202_I	1.196	0.96
188_E	191_K	1.187	0.96
280_A	284_P	1.186	0.96
55_I	60_K	1.182	0.96
87_K	91_P	1.171	0.96
157_I	282_R	1.170	0.96
128_N	160_D	1.169	0.96
188_E	192_K	1.164	0.95
164_I	201_M	1.160	0.95
216_T	220_Y	1.159	0.95
263_I	291_P	1.155	0.95
84_I	120_V	1.151	0.95
87_K	120_V	1.150	0.95
59_G	73_H	1.145	0.95
270_E	274_T	1.145	0.95
39_I	194_I	1.144	0.95
254_S	258_G	1.132	0.95
215_H	218_E	1.126	0.95
37_Q	187_K	1.121	0.94
32_L	36_Q	1.118	0.94
34_A	183_V	1.116	0.94
176_A	189_I	1.115	0.94
192_K	265_I	1.110	0.94
247_M	250_A	1.109	0.94
55_I	59_G	1.103	0.94
225_Y	260_R	1.097	0.94
22_W	29_F	1.092	0.94
257_W	260_R	1.085	0.93
105_L	126_V	1.083	0.93
232_S	253_K	1.082	0.93
224_V	268_Q	1.079	0.93
80_L	124_V	1.072	0.93
262_P	266_F	1.068	0.93
238_K	241_E	1.060	0.93
196_H	200_A	1.059	0.93
125_I	193_A	1.057	0.92
224_V	229_E	1.057	0.92
263_I	284_P	1.057	0.92
98_N	127_H	1.057	0.92
61_I	127_H	1.055	0.92
55_I	78_R	1.054	0.92
59_G	62_P	1.043	0.92
242_E	245_D	1.043	0.92
277_Q	280_A	1.040	0.92
263_I	266_F	1.032	0.92
160_D	177_R	1.022	0.91
275_Y	283_S	1.012	0.91
253_K	256_E	1.009	0.91
223_R	226_K	1.000	0.90
257_W	261_I	0.999	0.90
180_A	186_L	0.996	0.90
263_I	267_Y	0.993	0.90
48_K	94_E	0.992	0.90
62_P	66_R	0.992	0.90
262_P	290_P	0.985	0.90
187_K	191_K	0.982	0.89
59_G	78_R	0.980	0.89
52_V	97_V	0.972	0.89
221_D	224_V	0.972	0.89
249_K	252_L	0.972	0.89
243_M	252_L	0.971	0.89
189_I	238_K	0.967	0.89
60_K	73_H	0.957	0.88
179_Y	205_L	0.955	0.88
31_I	204_V	0.953	0.88
174_F	265_I	0.953	0.88
105_L	142_T	0.949	0.88
84_I	118_R	0.947	0.88
166_L	169_S	0.939	0.87
104_Q	126_V	0.935	0.87
55_I	71_G	0.935	0.87
164_I	177_R	0.930	0.87
131_V	210_T	0.929	0.87
116_G	201_M	0.923	0.86
282_R	286_Y	0.920	0.86
87_K	95_V	0.919	0.86
276_E	279_I	0.917	0.86
127_H	206_Q	0.915	0.86
280_A	283_S	0.903	0.85
72_V	86_I	0.903	0.85
215_H	219_Y	0.902	0.85
94_E	121_D	0.897	0.85
112_F	124_V	0.896	0.85
283_S	290_P	0.895	0.84
261_I	291_P	0.881	0.84
30_G	34_A	0.879	0.83
63_H	66_R	0.875	0.83
276_E	280_A	0.871	0.83
158_N	172_Y	0.865	0.82
179_Y	223_R	0.861	0.82
57_C	107_I	0.845	0.81
143_L	149_T	0.836	0.80
265_I	269_N	0.834	0.80
240_P	252_L	0.830	0.80
260_R	263_I	0.830	0.80
113_V	170_S	0.822	0.79
283_S	286_Y	0.817	0.79
35_E	61_I	0.816	0.79
75_L	78_R	0.812	0.78
259_D	264_G	0.810	0.78
279_I	282_R	0.810	0.78
186_L	204_V	0.800	0.77
235_P	239_K	0.800	0.77
112_F	167_A	0.797	0.77
243_M	246_K	0.793	0.77
284_P	287_L	0.791	0.76
58_S	127_H	0.787	0.76
240_P	245_D	0.786	0.76
74_T	78_R	0.786	0.76
250_A	254_S	0.785	0.76
216_T	219_Y	0.784	0.76
40_Q	47_K	0.781	0.75
91_P	120_V	0.780	0.75
123_T	190_I	0.780	0.75
273_S	277_Q	0.779	0.75
250_A	253_K	0.776	0.75
56_G	78_R	0.767	0.74
259_D	266_F	0.760	0.74
88_L	171_G	0.758	0.73
225_Y	229_E	0.755	0.73
117_R	139_A	0.750	0.73
110_G	113_V	0.749	0.72
172_Y	175_V	0.747	0.72
165_A	168_I	0.744	0.72
259_D	263_I	0.743	0.72
288_D	291_P	0.740	0.72
143_L	155_P	0.738	0.71
51_L	69_A	0.738	0.71
35_E	96_I	0.733	0.71
189_I	265_I	0.733	0.71
136_K	174_F	0.732	0.71
83_A	122_L	0.727	0.70
218_E	227_L	0.725	0.70
130_G	144_K	0.721	0.70
115_A	199_L	0.720	0.69
163_P	201_M	0.718	0.69
124_V	167_A	0.702	0.67
223_R	227_L	0.698	0.67
189_I	202_I	0.698	0.67
119_N	172_Y	0.697	0.67
154_K	157_I	0.697	0.67
105_L	203_D	0.697	0.67
123_T	193_A	0.696	0.67
148_K	275_Y	0.696	0.67
20_N	29_F	0.694	0.67
23_C	26_C	0.692	0.66
274_T	278_R	0.690	0.66
51_L	65_I	0.689	0.66
192_K	240_P	0.689	0.66
261_I	265_I	0.687	0.66
55_I	76_H	0.683	0.65
275_Y	286_Y	0.682	0.65
267_Y	287_L	0.680	0.65
286_Y	290_P	0.678	0.65
164_I	266_F	0.676	0.65
86_I	90_N	0.674	0.64
192_K	241_E	0.674	0.64
112_F	201_M	0.674	0.64
244_D	251_I	0.672	0.64
171_G	175_V	0.670	0.64
57_C	208_C	0.666	0.63
163_P	175_V	0.664	0.63
53_S	62_P	0.664	0.63
80_L	115_A	0.663	0.63
20_N	73_H	0.662	0.63
105_L	163_P	0.657	0.62
248_S	252_L	0.655	0.62
216_T	226_K	0.654	0.62
277_Q	281_E	0.654	0.62
80_L	97_V	0.648	0.61
139_A	152_L	0.648	0.61
80_L	104_Q	0.647	0.61
39_I	49_V	0.646	0.61
39_I	96_I	0.646	0.61
76_H	107_I	0.645	0.61
259_D	265_I	0.644	0.61
50_V	93_L	0.644	0.61
88_L	120_V	0.644	0.61
265_I	271_L	0.640	0.60
105_L	141_P	0.640	0.60
235_P	238_K	0.637	0.60
107_I	110_G	0.634	0.60
94_E	123_T	0.633	0.60
262_P	265_I	0.633	0.60
174_F	192_K	0.633	0.60
22_W	61_I	0.629	0.59
218_E	224_V	0.627	0.59
276_E	284_P	0.626	0.59
20_N	24_P	0.625	0.59
113_V	166_L	0.617	0.58
197_K	274_T	0.617	0.58
58_S	206_Q	0.616	0.57
179_Y	227_L	0.615	0.57
279_I	287_L	0.613	0.57
130_G	143_L	0.613	0.57
217_K	229_E	0.612	0.57
273_S	287_L	0.605	0.56
276_E	283_S	0.604	0.56
248_S	251_I	0.604	0.56
234_D	238_K	0.604	0.56
17_V	32_L	0.603	0.56
79_A	99_G	0.603	0.56
135_T	208_C	0.602	0.56
131_V	137_G	0.601	0.56
246_K	249_K	0.601	0.56
102_G	140_S	0.600	0.55
34_A	37_Q	0.599	0.55
131_V	147_V	0.598	0.55
227_L	236_I	0.598	0.55
252_L	255_M	0.596	0.55
109_V	113_V	0.595	0.55
87_K	121_D	0.592	0.54
260_R	291_P	0.592	0.54
192_K	195_K	0.591	0.54
63_H	136_K	0.591	0.54
273_S	278_R	0.591	0.54
154_K	282_R	0.590	0.54
95_V	196_H	0.590	0.54
142_T	160_D	0.589	0.54
252_L	263_I	0.588	0.54
18_E	21_D	0.587	0.54
168_I	175_V	0.586	0.54
51_L	98_N	0.586	0.54
220_Y	223_R	0.584	0.53
89_A	93_L	0.583	0.53
243_M	247_M	0.583	0.53
240_P	244_D	0.581	0.53
28_N	206_Q	0.579	0.53
221_D	227_L	0.578	0.53
80_L	111_H	0.576	0.52
116_G	124_V	0.575	0.52
232_S	235_P	0.575	0.52
218_E	228_D	0.570	0.52
220_Y	224_V	0.569	0.52
85_G	89_A	0.568	0.51
55_I	77_G	0.565	0.51
217_K	227_L	0.564	0.51
39_I	123_T	0.562	0.51
219_Y	223_R	0.562	0.51
166_L	170_S	0.560	0.50
168_I	239_K	0.559	0.50
35_E	49_V	0.559	0.50
63_H	73_H	0.557	0.50
177_R	235_P	0.555	0.50
27_G	30_G	0.555	0.50
180_A	207_P	0.551	0.49
177_R	237_V	0.548	0.49
137_G	213_D	0.547	0.49
122_L	168_I	0.547	0.49
23_C	208_C	0.547	0.49
168_I	244_D	0.542	0.48
260_R	264_G	0.541	0.48
239_K	242_E	0.541	0.48
86_I	89_A	0.540	0.48
232_S	238_K	0.538	0.48
60_K	63_H	0.536	0.47
254_S	257_W	0.534	0.47
192_K	238_K	0.533	0.47
278_R	283_S	0.531	0.47
128_N	177_R	0.531	0.47
58_S	107_I	0.530	0.47
145_L	289_N	0.530	0.47
181_Y	207_P	0.529	0.47
149_T	162_N	0.528	0.46
105_L	201_M	0.528	0.46
32_L	58_S	0.528	0.46
35_E	186_L	0.527	0.46
277_Q	284_P	0.527	0.46
22_W	28_N	0.525	0.46
109_V	169_S	0.525	0.46
36_Q	69_A	0.525	0.46
60_K	83_A	0.524	0.46
94_E	200_A	0.522	0.46
235_P	251_I	0.521	0.46
258_G	263_I	0.521	0.46
137_G	148_K	0.520	0.45
256_E	259_D	0.519	0.45
286_Y	289_N	0.518	0.45
54_G	99_G	0.518	0.45
197_K	242_E	0.517	0.45
97_V	124_V	0.516	0.45
56_G	155_P	0.516	0.45
118_R	172_Y	0.515	0.45
251_I	254_S	0.515	0.45
139_A	142_T	0.514	0.45
94_E	97_V	0.512	0.45
87_K	122_L	0.510	0.44
185_H	238_K	0.510	0.44
157_I	279_I	0.510	0.44
242_E	252_L	0.510	0.44
11_Y	15_L	0.510	0.44
79_A	142_T	0.509	0.44
281_E	285_S	0.509	0.44
229_E	235_P	0.509	0.44
145_L	282_R	0.508	0.44
263_I	269_N	0.508	0.44
164_I	262_P	0.506	0.44
260_R	266_F	0.505	0.44
40_Q	160_D	0.505	0.44
115_A	124_V	0.503	0.43
239_K	244_D	0.502	0.43
53_S	59_G	0.502	0.43
60_K	106_G	0.502	0.43
54_G	71_G	0.501	0.43
34_A	187_K	0.500	0.43

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2c42A	2	0.9747	100	0.413	Contact Map
5c4iC	2	0.9082	100	0.552	Contact Map
4kgdA	4	0.7595	99.9	0.767	Contact Map
2panA	3	0.7532	99.9	0.777	Contact Map
1v5eA	4	0.7627	99.9	0.785	Contact Map
1ybhA	4	0.7025	99.9	0.787	Contact Map
2pgnA	4	0.7184	99.9	0.795	Contact Map
4rjjA	5	0.6709	99.9	0.795	Contact Map
1t9bA	2	0.731	99.9	0.796	Contact Map
4k9qA	4	0.6171	99.9	0.796	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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