Q97V16 - SULSO - GREMLIN Contacts

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Q97V16 - Phosphoenolpyruvate synthase (PpsA-2)

UniProt:	Q97V16	Sequences: MNYTYLLDEVSLSMVSIVGRKSAYLGELYKMGFNIPKGFIISSRGVNEAIKDLDDEIRGILSSVNLNDTTDLEKRSEMIKSMIIASKLPNEMEKEIYERFSQLGSKYVAVRATATSPLSGASFAGEYETDLFVTQENLIPSIKRVIASYFNPRAIAYRILTHNEAGMAILVQTMINPVSAGTAFSIHPITEEPDYVVIESSFGLGESVTKGMVTPDQYVVSKATRSLVSKRISEKVMKLTYDFAEKKIKSIELSKEEALAESLSDNDAIRIANMAIAIESIFKRNINIEWAIEDKKVYLLEVRGIRRLYPEF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	312 (303)
Sequences:	3193 (2095)
Seq/√Len:	120.4

ECOLI - PPSA
BACSU - PPS YVKC
HALSA - Q9HSA1
SULSO - Q97V16 Q97ZL2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
200_S	262_S	4.480	1.00
183_A	275_A	4.007	1.00
187_H	195_Y	3.479	1.00
278_I	299_L	3.292	1.00
286_I	302_V	3.183	1.00
101_S	135_Q	3.165	1.00
291_A	300_L	3.058	1.00
22_S	170_L	3.054	1.00
185_S	275_A	2.891	1.00
238_K	257_E	2.812	1.00
201_S	208_V	2.705	1.00
230_K	265_D	2.683	1.00
264_S	267_D	2.599	1.00
47_N	166_G	2.586	1.00
76_S	155_I	2.585	1.00
37_K	173_T	2.438	1.00
48_E	91_E	2.431	1.00
51_K	54_D	2.329	1.00
57_I	79_I	2.320	1.00
81_S	85_A	2.308	1.00
97_Y	135_Q	2.300	1.00
292_I	297_V	2.259	1.00
207_S	250_S	2.175	1.00
218_Y	262_S	2.170	1.00
46_V	150_F	2.159	1.00
60_I	78_M	2.150	1.00
40_I	168_A	2.127	1.00
220_V	268_A	2.124	1.00
7_L	29_Y	2.089	1.00
178_V	293_E	2.036	1.00
68_D	71_D	1.999	1.00
27_E	281_I	1.969	1.00
183_A	271_I	1.969	1.00
238_K	251_I	1.940	1.00
267_D	292_I	1.931	1.00
84_I	144_R	1.908	1.00
71_D	75_R	1.892	1.00
185_S	288_I	1.855	1.00
180_A	208_V	1.851	1.00
22_S	40_I	1.812	1.00
140_P	143_K	1.792	1.00
221_S	224_T	1.780	1.00
242_D	249_K	1.751	1.00
17_I	44_R	1.742	1.00
201_S	207_S	1.736	1.00
39_F	171_V	1.735	1.00
254_S	257_E	1.734	1.00
6_L	9_E	1.733	1.00
90_N	93_E	1.711	1.00
186_I	193_P	1.700	1.00
177_P	291_A	1.679	1.00
49_A	86_S	1.675	1.00
18_V	40_I	1.625	1.00
141_S	144_R	1.619	1.00
93_E	97_Y	1.619	1.00
232_I	261_E	1.609	1.00
199_E	217_Q	1.609	1.00
11_S	30_K	1.598	1.00
198_I	268_A	1.589	1.00
23_A	27_E	1.550	1.00
270_R	273_N	1.546	1.00
77_E	81_S	1.527	1.00
34_N	296_K	1.520	1.00
279_E	285_N	1.511	1.00
270_R	296_K	1.510	1.00
161_T	164_E	1.508	1.00
222_K	279_E	1.489	1.00
90_N	94_K	1.476	1.00
54_D	58_R	1.475	1.00
76_S	152_P	1.471	1.00
94_K	98_E	1.466	1.00
257_E	260_A	1.463	1.00
93_E	139_I	1.459	1.00
100_F	108_V	1.454	1.00
230_K	261_E	1.436	1.00
10_V	26_G	1.429	1.00
227_L	230_K	1.402	1.00
239_L	250_S	1.393	1.00
5_Y	10_V	1.392	1.00
200_S	218_Y	1.387	1.00
123_F	157_Y	1.384	1.00
48_E	52_D	1.378	1.00
207_S	239_L	1.377	1.00
179_S	262_S	1.366	1.00
56_E	82_M	1.365	1.00
73_E	152_P	1.346	1.00
159_I	162_H	1.342	1.00
87_K	143_K	1.322	1.00
10_V	18_V	1.306	1.00
44_R	48_E	1.302	1.00
240_T	251_I	1.297	1.00
50_I	83_I	1.294	1.00
273_N	277_A	1.278	1.00
234_E	258_A	1.270	1.00
8_D	37_K	1.263	1.00
206_E	210_K	1.248	0.99
117_P	124_A	1.246	0.99
95_E	98_E	1.237	0.99
179_S	267_D	1.233	0.99
187_H	190_T	1.232	0.99
196_V	272_A	1.228	0.99
202_F	235_K	1.226	0.99
238_K	253_L	1.225	0.99
133_V	141_S	1.215	0.99
130_D	144_R	1.215	0.99
187_H	219_V	1.206	0.99
132_F	241_Y	1.200	0.99
179_S	292_I	1.197	0.99
80_K	151_N	1.190	0.99
216_D	235_K	1.186	0.99
47_N	54_D	1.183	0.99
88_L	139_I	1.177	0.99
60_I	75_R	1.177	0.99
263_L	267_D	1.175	0.99
142_I	146_I	1.156	0.99
71_D	74_K	1.150	0.99
202_F	253_L	1.149	0.99
100_F	138_L	1.149	0.99
11_S	14_M	1.146	0.99
277_A	280_S	1.142	0.99
58_R	62_S	1.140	0.99
183_A	288_I	1.140	0.99
186_I	308_L	1.136	0.99
181_G	290_W	1.135	0.99
142_I	169_I	1.134	0.99
237_M	250_S	1.131	0.99
278_I	288_I	1.127	0.99
186_I	305_I	1.126	0.99
49_A	89_P	1.118	0.99
177_P	180_A	1.115	0.99
305_I	308_L	1.106	0.99
48_E	92_M	1.106	0.99
7_L	10_V	1.099	0.99
127_Y	154_A	1.091	0.99
220_V	272_A	1.089	0.99
137_N	141_S	1.088	0.98
74_K	78_M	1.085	0.98
192_E	195_Y	1.083	0.98
126_E	131_L	1.074	0.98
52_D	90_N	1.074	0.98
274_M	299_L	1.066	0.98
140_P	144_R	1.060	0.98
84_I	147_A	1.058	0.98
34_N	274_M	1.053	0.98
88_L	92_M	1.052	0.98
112_A	117_P	1.046	0.98
225_R	269_I	1.044	0.98
49_A	143_K	1.039	0.98
108_V	138_L	1.037	0.98
182_T	201_S	1.033	0.98
178_V	267_D	1.032	0.98
182_T	209_T	1.028	0.98
97_Y	139_I	1.027	0.98
197_V	219_V	1.027	0.98
100_F	103_L	1.026	0.98
233_S	261_E	1.026	0.98
79_I	83_I	1.020	0.98
6_L	102_Q	1.018	0.98
89_P	92_M	1.005	0.97
288_I	299_L	1.005	0.97
7_L	22_S	1.001	0.97
56_E	59_G	0.999	0.97
278_I	302_V	0.994	0.97
183_A	196_V	0.992	0.97
109_A	131_L	0.992	0.97
53_L	82_M	0.985	0.97
238_K	254_S	0.984	0.97
242_D	246_K	0.978	0.97
41_I	169_I	0.975	0.97
160_L	165_A	0.974	0.97
55_D	58_R	0.965	0.97
96_I	142_I	0.963	0.97
56_E	60_I	0.956	0.97
48_E	51_K	0.956	0.97
60_I	63_S	0.955	0.97
253_L	257_E	0.942	0.96
154_A	158_R	0.938	0.96
207_S	237_M	0.934	0.96
40_I	170_L	0.932	0.96
12_L	27_E	0.931	0.96
268_A	272_A	0.924	0.96
55_D	59_G	0.912	0.96
175_I	291_A	0.906	0.95
180_A	207_S	0.903	0.95
197_V	217_Q	0.903	0.95
209_T	287_N	0.901	0.95
135_Q	138_L	0.899	0.95
261_E	265_D	0.891	0.95
200_S	290_W	0.890	0.95
142_I	172_Q	0.884	0.95
58_R	163_N	0.883	0.95
179_S	263_L	0.881	0.95
227_L	268_A	0.881	0.95
270_R	297_V	0.877	0.94
106_K	173_T	0.877	0.94
255_K	259_L	0.876	0.94
180_A	210_K	0.866	0.94
24_Y	286_I	0.864	0.94
53_L	56_E	0.859	0.94
97_Y	136_E	0.858	0.94
5_Y	9_E	0.855	0.94
185_S	286_I	0.854	0.94
76_S	79_I	0.851	0.94
235_K	262_S	0.851	0.94
130_D	141_S	0.850	0.93
208_V	215_P	0.847	0.93
53_L	57_I	0.846	0.93
20_R	157_Y	0.845	0.93
7_L	38_G	0.844	0.93
234_E	259_L	0.838	0.93
218_Y	268_A	0.838	0.93
179_S	200_S	0.837	0.93
232_I	235_K	0.833	0.93
253_L	258_A	0.828	0.93
133_V	247_K	0.822	0.92
127_Y	167_M	0.822	0.92
98_E	102_Q	0.815	0.92
54_D	57_I	0.809	0.92
185_S	196_V	0.809	0.92
46_V	83_I	0.804	0.91
107_Y	134_T	0.800	0.91
52_D	86_S	0.797	0.91
118_L	127_Y	0.796	0.91
88_L	143_K	0.792	0.91
218_Y	263_L	0.791	0.91
218_Y	261_E	0.785	0.90
116_S	165_A	0.776	0.90
118_L	160_L	0.775	0.90
6_L	99_R	0.774	0.90
239_L	248_I	0.773	0.90
80_K	152_P	0.773	0.90
28_L	278_I	0.773	0.90
115_T	118_L	0.773	0.90
195_Y	221_S	0.768	0.90
12_L	15_V	0.768	0.90
176_N	293_E	0.765	0.89
162_H	165_A	0.764	0.89
65_N	68_D	0.763	0.89
38_G	211_G	0.762	0.89
182_T	287_N	0.761	0.89
52_D	91_E	0.760	0.89
218_Y	230_K	0.759	0.89
222_K	276_I	0.757	0.89
274_M	297_V	0.752	0.89
233_S	239_L	0.751	0.88
201_S	262_S	0.748	0.88
7_L	37_K	0.748	0.88
70_T	74_K	0.743	0.88
112_A	124_A	0.735	0.87
184_F	305_I	0.734	0.87
266_N	269_I	0.734	0.87
255_K	258_A	0.734	0.87
287_N	303_R	0.732	0.87
42_S	45_G	0.729	0.87
91_E	95_E	0.727	0.87
184_F	287_N	0.727	0.87
103_L	108_V	0.724	0.87
180_A	205_G	0.722	0.86
172_Q	184_F	0.720	0.86
184_F	306_R	0.720	0.86
111_R	117_P	0.718	0.86
29_Y	37_K	0.718	0.86
52_D	89_P	0.717	0.86
269_I	273_N	0.716	0.86
8_D	106_K	0.713	0.86
41_I	96_I	0.712	0.86
112_A	287_N	0.710	0.86
111_R	125_G	0.708	0.85
212_M	239_L	0.705	0.85
87_K	93_E	0.703	0.85
242_D	245_E	0.702	0.85
225_R	276_I	0.701	0.85
282_F	286_I	0.701	0.85
261_E	268_A	0.700	0.85
49_A	53_L	0.699	0.85
270_R	274_M	0.699	0.85
20_R	114_A	0.699	0.85
244_A	247_K	0.697	0.84
26_G	38_G	0.697	0.84
4_T	99_R	0.697	0.84
25_L	181_G	0.694	0.84
34_N	270_R	0.694	0.84
66_L	159_I	0.694	0.84
18_V	22_S	0.693	0.84
293_E	296_K	0.688	0.84
115_T	165_A	0.687	0.84
97_Y	101_S	0.687	0.84
80_K	128_E	0.684	0.83
45_G	92_M	0.678	0.83
18_V	168_A	0.677	0.83
38_G	215_P	0.676	0.83
150_F	163_N	0.671	0.82
63_S	75_R	0.671	0.82
150_F	187_H	0.667	0.82
138_L	169_I	0.667	0.82
49_A	146_I	0.666	0.82
110_V	117_P	0.665	0.82
76_S	80_K	0.664	0.81
75_R	79_I	0.664	0.81
5_Y	8_D	0.659	0.81
80_K	83_I	0.657	0.81
287_N	301_E	0.652	0.80
251_I	254_S	0.649	0.80
216_D	220_V	0.647	0.80
59_G	62_S	0.645	0.80
196_V	222_K	0.644	0.79
282_F	302_V	0.644	0.79
173_T	293_E	0.642	0.79
148_S	209_T	0.640	0.79
157_Y	184_F	0.639	0.79
110_V	138_L	0.639	0.79
62_S	163_N	0.639	0.79
94_K	135_Q	0.637	0.79
219_V	229_S	0.636	0.79
27_E	282_F	0.636	0.79
131_L	174_M	0.635	0.79
158_R	162_H	0.635	0.79
116_S	127_Y	0.633	0.78
289_E	301_E	0.632	0.78
112_A	122_S	0.631	0.78
114_A	127_Y	0.629	0.78
127_Y	162_H	0.629	0.78
5_Y	42_S	0.628	0.78
201_S	239_L	0.628	0.78
24_Y	282_F	0.626	0.78
78_M	81_S	0.623	0.77
88_L	146_I	0.621	0.77
196_V	275_A	0.619	0.77
86_S	143_K	0.619	0.77
81_S	101_S	0.618	0.77
127_Y	165_A	0.612	0.76
215_P	233_S	0.612	0.76
81_S	94_K	0.611	0.76
294_D	298_Y	0.610	0.76
56_E	78_M	0.607	0.75
121_A	127_Y	0.606	0.75
111_R	129_T	0.606	0.75
116_S	119_S	0.604	0.75
108_V	142_I	0.604	0.75
43_S	47_N	0.603	0.75
9_E	102_Q	0.602	0.75
90_N	98_E	0.602	0.75
48_E	164_E	0.601	0.75
182_T	208_V	0.600	0.75
183_A	198_I	0.599	0.74
64_V	75_R	0.599	0.74
136_E	144_R	0.598	0.74
278_I	286_I	0.597	0.74
18_V	26_G	0.597	0.74
20_R	113_T	0.596	0.74
23_A	26_G	0.596	0.74
113_T	117_P	0.596	0.74
214_T	234_E	0.596	0.74
21_K	301_E	0.596	0.74
244_A	249_K	0.592	0.74
55_D	60_I	0.592	0.74
24_Y	302_V	0.590	0.73
209_T	301_E	0.587	0.73
109_A	129_T	0.587	0.73
120_G	164_E	0.587	0.73
242_D	247_K	0.585	0.73
117_P	129_T	0.584	0.73
114_A	149_Y	0.584	0.73
235_K	258_A	0.582	0.72
39_F	103_L	0.582	0.72
112_A	126_E	0.581	0.72
112_A	301_E	0.580	0.72
52_D	87_K	0.576	0.72
149_Y	158_R	0.575	0.71
117_P	125_G	0.575	0.71
236_V	252_E	0.573	0.71
41_I	142_I	0.571	0.71
10_V	27_E	0.571	0.71
114_A	129_T	0.570	0.71
301_E	304_G	0.568	0.71
124_A	304_G	0.568	0.71
102_Q	105_S	0.567	0.70
240_T	249_K	0.566	0.70
115_T	149_Y	0.565	0.70
84_I	141_S	0.565	0.70
134_T	245_E	0.564	0.70
62_S	280_S	0.563	0.70
12_L	284_R	0.562	0.70
43_S	115_T	0.560	0.69
236_V	258_A	0.560	0.69
83_I	147_A	0.559	0.69
121_A	129_T	0.558	0.69
136_E	139_I	0.557	0.69
10_V	29_Y	0.556	0.69
14_M	27_E	0.555	0.69
111_R	124_A	0.555	0.69
24_Y	153_R	0.555	0.69
8_D	105_S	0.555	0.69
202_F	216_D	0.551	0.68
201_S	235_K	0.551	0.68
181_G	211_G	0.551	0.68
227_L	265_D	0.550	0.68
199_E	215_P	0.550	0.68
20_R	24_Y	0.549	0.68
210_K	239_L	0.548	0.68
129_T	300_L	0.543	0.67
114_A	167_M	0.541	0.67
149_Y	306_R	0.541	0.67
124_A	129_T	0.538	0.66
104_G	138_L	0.536	0.66
8_D	48_E	0.534	0.66
11_S	27_E	0.534	0.66
191_E	305_I	0.531	0.65
98_E	101_S	0.530	0.65
44_R	130_D	0.527	0.65
92_M	96_I	0.526	0.65
254_S	258_A	0.526	0.65
216_D	263_L	0.526	0.65
178_V	295_K	0.526	0.65
190_T	222_K	0.524	0.64
43_S	168_A	0.524	0.64
69_T	73_E	0.523	0.64
125_G	129_T	0.521	0.64
216_D	262_S	0.520	0.64
96_I	139_I	0.518	0.63
14_M	17_I	0.516	0.63
109_A	157_Y	0.516	0.63
192_E	222_K	0.516	0.63
155_I	290_W	0.515	0.63
48_E	89_P	0.515	0.63
69_T	74_K	0.515	0.63
153_R	206_E	0.515	0.63
31_M	34_N	0.515	0.63
97_Y	138_L	0.514	0.63
49_A	87_K	0.514	0.63
236_V	240_T	0.514	0.63
215_P	279_E	0.513	0.63
128_E	153_R	0.513	0.63
127_Y	158_R	0.513	0.63
79_I	84_I	0.513	0.63
68_D	83_I	0.513	0.63
156_A	159_I	0.512	0.63
115_T	121_A	0.511	0.62
201_S	213_V	0.511	0.62
47_N	51_K	0.511	0.62
39_F	99_R	0.510	0.62
142_I	171_V	0.509	0.62
95_E	229_S	0.509	0.62
20_R	287_N	0.509	0.62
87_K	129_T	0.508	0.62
22_S	29_Y	0.508	0.62
124_A	287_N	0.507	0.62
200_S	216_D	0.503	0.61
130_D	145_V	0.503	0.61
193_P	285_N	0.503	0.61
230_K	235_K	0.502	0.61
245_E	249_K	0.501	0.61
195_Y	219_V	0.500	0.61
224_T	228_V	0.500	0.61

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2olsA	2	0.9519	100	0.144	Contact Map
2x0sA	2	0.9391	100	0.381	Contact Map
1vbgA	2	0.8718	100	0.396	Contact Map
1kblA	2	0.8718	100	0.423	Contact Map
1a9xA	3	0.6699	93.3	0.935	Contact Map
2i87A	2	0.6218	83.7	0.946	Contact Map
3jrxA	1	0.6635	82.8	0.947	Contact Map
3u9tA	3	0.5962	82	0.947	Contact Map
1wr2A	1	0.6474	81.3	0.947	Contact Map
3va7A	1	0.4968	80	0.948	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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