Q97V05 - SULSO - GREMLIN Contacts

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Q97V05 - Uncharacterized protein

UniProt:	Q97V05	Sequences: MKLVEITREEIRGDLVGLVPVGSIEQHGPHLPMGTDGIISEYIASKAEEKLKDITLLFPTIYYGVSLEHKGFPFVSLSFQTAISFFTDLLESVFNDLGLRRIIIVNGHGGNSYFLPLVQREFNMKHSDAKVIVFNTFGEEEKILFNVNDLHAGTIETSKIWAIGKSLVRVNKIDEIKNYEVRDGVFIYYSSREANQFGVLNDGKPIRVNEEYGKKILRDLVDKLIWTILNFKV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	233 (218)
Sequences:	2139 (1631)
Seq/√Len:	110.4

HALSA - Q9HSQ6 Q9HP77
SULSO - Q97V05

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
78_S	88_D	3.491	1.00
34_G	38_I	3.275	1.00
50_K	222_D	3.253	1.00
170_V	173_I	3.224	1.00
154_T	212_Y	3.033	1.00
214_K	218_R	2.995	1.00
81_T	88_D	2.784	1.00
202_D	206_I	2.700	1.00
80_Q	84_S	2.577	1.00
91_E	125_K	2.567	1.00
41_E	60_T	2.533	1.00
162_A	214_K	2.437	1.00
77_L	85_F	2.395	1.00
40_S	107_G	2.348	1.00
42_Y	163_I	2.345	1.00
90_L	122_F	2.311	1.00
19_V	104_I	2.139	1.00
87_T	121_E	2.132	1.00
17_G	58_F	2.091	1.00
17_G	99_L	2.070	1.00
42_Y	46_K	2.039	1.00
162_A	217_L	2.022	1.00
46_K	49_E	1.985	1.00
17_G	93_V	1.967	1.00
26_Q	69_H	1.954	1.00
27_H	156_E	1.854	1.00
26_Q	198_G	1.828	1.00
161_W	170_V	1.797	1.00
163_I	217_L	1.739	1.00
90_L	102_I	1.716	1.00
61_I	85_F	1.709	1.00
47_A	224_L	1.677	1.00
10_E	169_R	1.640	1.00
71_G	192_R	1.636	1.00
38_I	164_G	1.628	1.00
87_T	125_K	1.622	1.00
66_S	69_H	1.614	1.00
221_V	225_I	1.613	1.00
46_K	217_L	1.611	1.00
75_V	89_L	1.607	1.00
175_E	202_D	1.601	1.00
158_S	209_N	1.593	1.00
30_H	157_T	1.585	1.00
162_A	210_E	1.576	1.00
46_K	162_A	1.546	1.00
218_R	222_D	1.515	1.00
158_S	212_Y	1.510	1.00
50_K	221_V	1.504	1.00
81_T	84_S	1.497	1.00
37_G	60_T	1.485	1.00
48_E	57_L	1.478	1.00
19_V	58_F	1.466	1.00
169_R	172_K	1.453	1.00
159_K	217_L	1.441	1.00
154_T	207_R	1.424	1.00
83_I	117_L	1.423	1.00
174_D	197_F	1.422	1.00
58_F	93_V	1.413	1.00
63_Y	75_V	1.404	1.00
8_R	11_I	1.394	1.00
158_S	161_W	1.372	1.00
132_I	227_T	1.367	1.00
210_E	214_K	1.364	1.00
23_S	66_S	1.362	1.00
84_S	88_D	1.334	1.00
47_A	225_I	1.332	1.00
164_G	167_L	1.325	1.00
149_D	153_G	1.322	1.00
78_S	81_T	1.308	0.99
42_Y	45_S	1.298	0.99
44_A	57_L	1.298	0.99
86_F	115_L	1.281	0.99
94_F	129_A	1.263	0.99
90_L	104_I	1.258	0.99
8_R	73_P	1.231	0.99
61_I	89_L	1.224	0.99
83_I	118_V	1.208	0.99
44_A	105_V	1.197	0.99
50_K	218_R	1.195	0.99
9_E	12_R	1.186	0.99
145_F	149_D	1.181	0.99
47_A	221_V	1.181	0.99
41_E	45_S	1.177	0.99
103_I	228_I	1.172	0.99
46_K	218_R	1.166	0.99
34_G	167_L	1.151	0.99
217_L	221_V	1.148	0.99
161_W	208_V	1.145	0.99
209_N	212_Y	1.137	0.98
18_L	228_I	1.135	0.98
35_T	160_I	1.135	0.98
19_V	102_I	1.120	0.98
18_L	57_L	1.115	0.98
46_K	214_K	1.088	0.98
69_H	110_G	1.087	0.98
222_D	226_W	1.085	0.98
113_Y	116_P	1.081	0.98
175_E	205_P	1.080	0.98
211_E	214_K	1.079	0.98
63_Y	89_L	1.078	0.98
22_G	40_S	1.073	0.98
65_V	114_F	1.070	0.98
226_W	229_L	1.067	0.98
40_S	105_V	1.047	0.97
45_S	49_E	1.047	0.97
101_R	130_K	1.038	0.97
8_R	12_R	1.035	0.97
88_D	92_S	1.025	0.97
38_I	160_I	1.024	0.97
179_Y	183_D	1.020	0.97
26_Q	66_S	1.017	0.97
18_L	44_A	1.013	0.97
35_T	38_I	0.991	0.96
169_R	173_I	0.991	0.96
191_S	195_N	0.988	0.96
69_H	198_G	0.979	0.96
79_F	114_F	0.973	0.96
161_W	210_E	0.971	0.96
50_K	225_I	0.969	0.96
44_A	48_E	0.959	0.96
211_E	215_K	0.954	0.96
43_I	220_L	0.954	0.96
137_F	140_E	0.954	0.96
91_E	126_H	0.953	0.96
225_I	229_L	0.952	0.95
42_Y	217_L	0.949	0.95
38_I	167_L	0.937	0.95
180_E	184_G	0.937	0.95
21_V	82_A	0.934	0.95
9_E	13_G	0.931	0.95
158_S	208_V	0.922	0.95
69_H	109_G	0.915	0.94
58_F	63_Y	0.912	0.94
81_T	85_F	0.912	0.94
26_Q	74_F	0.908	0.94
70_K	76_S	0.907	0.94
136_T	220_L	0.906	0.94
18_L	48_E	0.902	0.94
179_Y	184_G	0.901	0.94
15_L	100_R	0.899	0.94
68_E	110_G	0.899	0.94
81_T	92_S	0.891	0.94
20_P	40_S	0.884	0.93
208_V	213_G	0.882	0.93
22_G	44_A	0.873	0.93
46_K	50_K	0.870	0.93
40_S	60_T	0.865	0.93
27_H	36_D	0.859	0.92
80_Q	121_E	0.853	0.92
173_I	206_I	0.840	0.91
65_V	79_F	0.834	0.91
21_V	115_L	0.833	0.91
66_S	111_N	0.827	0.91
179_Y	185_V	0.827	0.91
87_T	118_V	0.825	0.91
51_L	225_I	0.823	0.91
22_G	63_Y	0.823	0.91
35_T	156_E	0.822	0.91
43_I	224_L	0.815	0.90
77_L	82_A	0.809	0.90
32_P	35_T	0.808	0.90
43_I	221_V	0.805	0.90
39_I	136_T	0.801	0.89
129_A	132_I	0.798	0.89
94_F	100_R	0.796	0.89
165_K	210_E	0.794	0.89
84_S	87_T	0.794	0.89
70_K	97_L	0.794	0.89
31_L	168_V	0.790	0.89
45_S	57_L	0.789	0.89
39_I	107_G	0.782	0.88
40_S	44_A	0.782	0.88
183_D	186_F	0.779	0.88
36_D	156_E	0.778	0.88
68_E	109_G	0.776	0.88
22_G	107_G	0.776	0.88
67_L	200_L	0.774	0.88
128_D	131_V	0.768	0.87
223_K	226_W	0.768	0.87
76_S	92_S	0.763	0.87
106_N	111_N	0.763	0.87
37_G	66_S	0.763	0.87
83_I	121_E	0.757	0.87
39_I	159_K	0.757	0.87
25_E	108_H	0.755	0.86
182_R	185_V	0.750	0.86
181_V	184_G	0.749	0.86
43_I	217_L	0.743	0.86
35_T	111_N	0.742	0.85
104_I	131_V	0.732	0.85
37_G	40_S	0.731	0.85
37_G	62_Y	0.730	0.85
92_S	95_N	0.728	0.84
209_N	213_G	0.725	0.84
47_A	105_V	0.720	0.84
154_T	158_S	0.720	0.84
190_S	193_E	0.719	0.84
201_N	205_P	0.716	0.83
16_V	101_R	0.716	0.83
219_D	223_K	0.715	0.83
94_F	126_H	0.710	0.83
102_I	129_A	0.708	0.83
170_V	209_N	0.708	0.83
161_W	168_V	0.703	0.82
142_K	215_K	0.700	0.82
19_V	86_F	0.693	0.81
123_N	189_Y	0.692	0.81
28_G	199_V	0.690	0.81
226_W	230_N	0.690	0.81
90_L	94_F	0.686	0.81
29_P	199_V	0.683	0.80
11_I	14_D	0.681	0.80
43_I	107_G	0.680	0.80
176_I	197_F	0.678	0.80
119_Q	131_V	0.678	0.80
68_E	153_G	0.676	0.80
106_N	109_G	0.672	0.79
80_Q	83_I	0.671	0.79
181_V	185_V	0.670	0.79
10_E	13_G	0.664	0.79
43_I	137_F	0.662	0.78
70_K	95_N	0.661	0.78
134_F	138_G	0.659	0.78
15_L	56_L	0.658	0.78
66_S	198_G	0.658	0.78
27_H	35_T	0.656	0.78
107_G	136_T	0.655	0.78
93_V	97_L	0.654	0.77
35_T	40_S	0.653	0.77
43_I	47_A	0.652	0.77
144_L	147_V	0.651	0.77
159_K	216_I	0.649	0.77
71_G	152_A	0.648	0.77
32_P	167_L	0.647	0.77
78_S	91_E	0.644	0.76
21_V	86_F	0.641	0.76
51_L	229_L	0.640	0.76
113_Y	120_R	0.635	0.75
179_Y	182_R	0.634	0.75
47_A	57_L	0.632	0.75
23_S	26_Q	0.630	0.75
180_E	186_F	0.627	0.74
157_T	205_P	0.624	0.74
9_E	49_E	0.624	0.74
31_L	160_I	0.620	0.74
121_E	125_K	0.618	0.73
36_D	64_G	0.611	0.73
68_E	191_S	0.608	0.72
116_P	120_R	0.607	0.72
154_T	201_N	0.606	0.72
157_T	199_V	0.606	0.72
189_Y	193_E	0.604	0.72
51_L	55_T	0.603	0.72
82_A	114_F	0.601	0.71
74_F	198_G	0.597	0.71
26_Q	68_E	0.595	0.71
22_G	60_T	0.586	0.69
111_N	136_T	0.581	0.69
47_A	50_K	0.580	0.69
215_K	219_D	0.579	0.69
106_N	115_L	0.579	0.69
44_A	107_G	0.578	0.68
21_V	61_I	0.576	0.68
158_S	213_G	0.572	0.68
131_V	134_F	0.568	0.67
27_H	31_L	0.566	0.67
41_E	62_Y	0.565	0.67
79_F	83_I	0.562	0.66
61_I	77_L	0.561	0.66
35_T	110_G	0.560	0.66
103_I	134_F	0.559	0.66
18_L	51_L	0.558	0.66
24_I	62_Y	0.558	0.66
49_E	226_W	0.556	0.65
12_R	73_P	0.555	0.65
26_Q	72_F	0.554	0.65
115_L	133_V	0.554	0.65
136_T	139_E	0.553	0.65
178_N	185_V	0.553	0.65
220_L	223_K	0.552	0.65
42_Y	164_G	0.551	0.65
70_K	190_S	0.550	0.65
42_Y	221_V	0.550	0.65
106_N	156_E	0.550	0.65
93_V	125_K	0.550	0.65
91_E	95_N	0.549	0.64
103_I	227_T	0.547	0.64
104_I	119_Q	0.547	0.64
68_E	188_Y	0.546	0.64
175_E	206_I	0.545	0.64
152_A	199_V	0.544	0.64
178_N	182_R	0.538	0.63
136_T	159_K	0.537	0.63
43_I	76_S	0.535	0.63
50_K	229_L	0.535	0.63
14_D	100_R	0.535	0.63
102_I	131_V	0.534	0.62
86_F	118_V	0.534	0.62
100_R	222_D	0.534	0.62
31_L	157_T	0.533	0.62
69_H	199_V	0.531	0.62
82_A	85_F	0.531	0.62
15_L	101_R	0.529	0.62
66_S	110_G	0.528	0.62
178_N	186_F	0.528	0.62
107_G	137_F	0.527	0.61
26_Q	76_S	0.525	0.61
110_G	149_D	0.524	0.61
46_K	163_I	0.524	0.61
12_R	89_L	0.521	0.60
143_I	146_N	0.515	0.60
26_Q	37_G	0.513	0.59
181_V	186_F	0.512	0.59
18_L	50_K	0.511	0.59
50_K	211_E	0.511	0.59
61_I	82_A	0.510	0.59
212_Y	216_I	0.510	0.59
120_R	124_M	0.508	0.59
16_V	142_K	0.508	0.59
75_V	93_V	0.508	0.59
159_K	220_L	0.507	0.58
134_F	161_W	0.505	0.58
58_F	75_V	0.504	0.58
17_G	75_V	0.504	0.58
86_F	104_I	0.502	0.58
144_L	148_N	0.501	0.58
172_K	223_K	0.500	0.57

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3no4A	5	0.97	100	0.12	Contact Map
3lubA	4	0.9785	100	0.122	Contact Map
1v7zA	5	0.9785	100	0.14	Contact Map
2zqeA	1	0.3305	23.9	0.956	Contact Map
3ei9A	2	0.3906	22.7	0.956	Contact Map
3f7xA	2	0.4893	16	0.959	Contact Map
3gr7A	3	0.7597	12.4	0.961	Contact Map
3hgjA	2	0.7597	12.4	0.961	Contact Map
4od6A	1	0.3305	12.1	0.961	Contact Map
4oe7A	3	0.7725	11.5	0.961	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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