Q97UZ0 - SULSO - GREMLIN Contacts

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Q97UZ0 - ABC transporter, permease (Glucose)

UniProt:	Q97UZ0	Sequences: MMKKGTIILVAPTAIFSAILLYLVIWNAVMSFMNWSLLNSKPTFVGLETYSIVIRTFQFTNSLLHSIELSVILVVIGNILGIFIAALLYFLNSNKARSTFLSIVIYPLSISMAVNGLIWLWLFNIHIGVDWLLVRIGLPQFPWLSSTSTMFPSLVLVSVWAYTGIAALFYLAGFMNIDKTIVEAARLDGTSAFKILYKILIPNSLNSFIIATALLFLFSFRIFDLPYVLSGGTTNIFLQTSELYMYYLFTVEYFSQATAVATMITLIATIIIIPYALTVIRRWIRR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	286 (249)
Sequences:	70684 (45480)
Seq/√Len:	2882.2

ECOLI - POTH YCJO UGPA POTB YDCU YDCV THIP PSTC MALF YCJP MALG POTC POTI YNJC CYST UGPE PSTA CYSW MODB SSUC YEHY YEHW TAUC PHNE METI PROW YECS
BACSU - GANP YURN AMYD MDXF YTEP ARAP LPLB YESP MDXG YTCP YURM AMYC GANQ YESQ YQGH ARAQ LPLC YVGM YQGI YTLD SSUC OPUAB TCYB METP YXEN TCYL OPUCB OPUBB OPUBD OPUCD ARTQ
HALSA - Q9HMT4 Q9HP01 Q9HHQ7 Q9HML6 Q9HP02 Q9HR05 Q9HS11 Q9HPK3 Q9HHQ6 Q9HNI9 Q9HS12
SULSO - Q97UZ0 Q97UF4 Q97YY2 Q97ZC2 Q97ZC1 Q97UF3 Q97YY3 Q97ZT7 Q97VC0 Q97UY9 Q97Z98 Q97ZT6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
194_K	198_K	3.949	1.00
64_L	68_E	3.282	1.00
186_R	195_I	3.158	1.00
171_L	175_M	3.034	1.00
61_N	64_L	2.629	1.00
173_G	207_S	2.571	1.00
72_I	155_V	2.521	1.00
191_S	194_K	2.512	1.00
185_A	195_I	2.511	1.00
239_Q	247_Y	2.508	1.00
182_V	200_L	2.504	1.00
76_I	159_V	2.462	1.00
31_S	50_Y	2.435	1.00
51_S	55_R	2.426	1.00
192_A	195_I	2.373	1.00
60_T	64_L	2.359	1.00
48_E	51_S	2.322	1.00
74_V	212_T	2.306	1.00
170_Y	208_F	2.215	1.00
193_F	197_Y	2.210	1.00
48_E	52_I	2.169	1.00
62_S	244_Y	2.150	1.00
253_Y	256_Q	2.137	1.00
94_N	97_R	2.126	1.00
190_T	194_K	2.080	1.00
68_E	151_F	1.992	1.00
194_K	197_Y	1.992	1.00
166_A	211_A	1.967	1.00
82_I	196_L	1.950	1.00
89_Y	175_M	1.933	1.00
181_I	203_N	1.913	1.00
174_F	204_S	1.898	1.00
185_A	190_T	1.889	1.00
101_L	171_L	1.876	1.00
29_V	33_M	1.871	1.00
25_I	29_V	1.809	1.00
78_N	212_T	1.790	1.00
82_I	204_S	1.789	1.00
61_N	65_H	1.770	1.00
182_V	195_I	1.751	1.00
91_L	182_V	1.750	1.00
186_R	192_A	1.735	1.00
273_I	277_L	1.719	1.00
239_Q	244_Y	1.687	1.00
73_L	219_S	1.682	1.00
52_I	256_Q	1.682	1.00
70_S	216_F	1.662	1.00
182_V	186_R	1.658	1.00
68_E	72_I	1.653	1.00
82_I	170_Y	1.618	1.00
84_I	167_A	1.615	1.00
81_G	166_A	1.592	1.00
88_L	167_A	1.578	1.00
52_I	55_R	1.501	1.00
166_A	215_L	1.482	1.00
179_K	182_V	1.482	1.00
91_L	179_K	1.481	1.00
22_Y	26_W	1.470	1.00
28_A	262_T	1.464	1.00
96_A	99_T	1.453	1.00
93_S	97_R	1.447	1.00
79_I	83_F	1.425	1.00
89_Y	171_L	1.400	1.00
58_Q	61_N	1.393	1.00
47_L	51_S	1.388	1.00
201_I	208_F	1.382	1.00
10_V	14_A	1.364	1.00
85_A	170_Y	1.352	1.00
77_G	215_L	1.344	1.00
46_G	49_T	1.343	1.00
174_F	200_L	1.336	1.00
26_W	30_M	1.335	1.00
210_I	214_L	1.321	1.00
170_Y	211_A	1.303	1.00
82_I	208_F	1.289	1.00
179_K	183_E	1.288	1.00
223_F	227_Y	1.287	1.00
86_A	174_F	1.278	1.00
7_I	10_V	1.258	1.00
180_T	183_E	1.250	1.00
123_F	153_S	1.243	1.00
225_L	229_L	1.224	1.00
99_T	102_S	1.215	1.00
240_T	243_L	1.196	1.00
185_A	199_I	1.195	1.00
177_I	203_N	1.194	1.00
75_V	79_I	1.183	1.00
151_F	238_L	1.174	1.00
72_I	75_V	1.171	1.00
65_H	68_E	1.166	1.00
157_V	229_L	1.153	1.00
230_S	238_L	1.145	1.00
66_S	241_S	1.144	1.00
205_L	209_I	1.140	1.00
78_N	208_F	1.140	1.00
191_S	195_I	1.136	1.00
37_L	44_F	1.134	1.00
244_Y	247_Y	1.118	1.00
154_L	226_P	1.103	1.00
150_M	238_L	1.103	1.00
34_N	37_L	1.100	1.00
76_I	155_V	1.079	1.00
170_Y	207_S	1.077	1.00
99_T	103_I	1.075	1.00
27_N	262_T	1.070	1.00
247_Y	250_T	1.070	1.00
163_T	167_A	1.057	1.00
89_Y	174_F	1.056	1.00
277_L	280_I	1.047	1.00
26_W	29_V	1.040	1.00
125_I	128_G	1.034	1.00
72_I	76_I	1.027	1.00
155_V	159_V	1.024	1.00
239_Q	243_L	1.018	1.00
86_A	196_L	1.015	1.00
121_W	125_I	1.011	1.00
52_I	56_T	1.010	1.00
223_F	246_Y	1.009	1.00
151_F	155_V	1.009	1.00
244_Y	260_V	1.005	1.00
190_T	195_I	1.002	1.00
274_P	278_T	1.000	1.00
54_I	60_T	0.999	1.00
83_F	87_L	0.998	1.00
169_F	211_A	0.998	1.00
203_N	206_N	0.997	1.00
226_P	240_T	0.997	1.00
7_I	11_A	0.997	1.00
222_I	225_L	0.981	1.00
73_L	158_S	0.979	1.00
97_R	175_M	0.979	1.00
182_V	192_A	0.974	1.00
73_L	77_G	0.974	1.00
195_I	198_K	0.970	1.00
152_P	156_L	0.968	1.00
86_A	192_A	0.963	1.00
67_I	71_V	0.953	1.00
65_H	151_F	0.952	1.00
75_V	212_T	0.939	1.00
50_Y	262_T	0.937	1.00
238_L	242_E	0.936	1.00
69_L	240_T	0.923	1.00
68_E	152_P	0.918	1.00
222_I	226_P	0.918	1.00
119_W	229_L	0.915	1.00
85_A	89_Y	0.915	1.00
59_F	260_V	0.915	1.00
68_E	71_V	0.905	1.00
23_L	27_N	0.903	1.00
31_S	35_W	0.891	1.00
17_S	21_L	0.890	1.00
274_P	277_L	0.889	1.00
71_V	75_V	0.888	1.00
41_K	44_F	0.882	1.00
242_E	246_Y	0.880	1.00
81_G	167_A	0.878	1.00
77_G	81_G	0.872	1.00
119_W	157_V	0.868	1.00
69_L	151_F	0.868	1.00
73_L	155_V	0.864	1.00
98_S	101_L	0.863	1.00
157_V	225_L	0.859	1.00
33_M	37_L	0.859	1.00
49_T	255_S	0.852	1.00
190_T	198_K	0.851	1.00
195_I	200_L	0.851	1.00
239_Q	242_E	0.848	1.00
227_Y	243_L	0.847	1.00
105_I	168_L	0.844	1.00
36_S	39_N	0.843	1.00
88_L	101_L	0.841	1.00
30_M	33_M	0.840	1.00
197_Y	201_I	0.838	1.00
243_L	247_Y	0.837	1.00
158_S	219_S	0.834	1.00
116_G	224_D	0.833	1.00
173_G	204_S	0.832	1.00
63_L	67_I	0.831	1.00
30_M	258_T	0.831	1.00
53_V	263_M	0.830	1.00
170_Y	204_S	0.829	1.00
204_S	207_S	0.827	1.00
63_L	241_S	0.826	1.00
69_L	158_S	0.824	1.00
95_K	98_S	0.823	1.00
10_V	13_T	0.819	1.00
242_E	245_M	0.817	1.00
205_L	208_F	0.814	1.00
35_W	39_N	0.812	1.00
248_L	251_V	0.811	1.00
8_I	12_P	0.811	1.00
64_L	67_I	0.809	1.00
112_M	161_A	0.809	1.00
87_L	94_N	0.807	1.00
268_A	272_I	0.805	1.00
85_A	167_A	0.805	1.00
166_A	170_Y	0.804	1.00
239_Q	246_Y	0.804	1.00
9_L	13_T	0.803	1.00
120_L	124_N	0.800	1.00
215_L	219_S	0.799	1.00
32_F	45_V	0.796	1.00
76_I	79_I	0.796	1.00
152_P	155_V	0.793	1.00
192_A	196_L	0.791	1.00
11_A	15_I	0.790	1.00
196_L	201_I	0.787	1.00
85_A	174_F	0.774	1.00
248_L	257_A	0.768	1.00
150_M	153_S	0.767	1.00
205_L	278_T	0.767	1.00
49_T	52_I	0.767	1.00
270_I	274_P	0.766	1.00
30_M	34_N	0.764	1.00
254_F	257_A	0.762	1.00
27_N	261_A	0.757	1.00
275_Y	278_T	0.755	1.00
72_I	159_V	0.749	1.00
84_I	163_T	0.748	1.00
11_A	14_A	0.748	1.00
256_Q	260_V	0.748	1.00
254_F	258_T	0.744	1.00
34_N	44_F	0.743	1.00
232_G	238_L	0.740	1.00
77_G	162_Y	0.736	1.00
128_G	144_L	0.733	1.00
88_L	171_L	0.733	1.00
81_G	170_Y	0.730	1.00
196_L	200_L	0.726	1.00
115_N	160_W	0.725	1.00
37_L	43_T	0.721	1.00
51_S	54_I	0.721	1.00
181_I	199_I	0.716	1.00
78_N	170_Y	0.711	1.00
74_V	216_F	0.711	1.00
112_M	224_D	0.711	1.00
45_V	48_E	0.708	1.00
80_L	163_T	0.705	1.00
162_Y	215_L	0.703	1.00
62_S	65_H	0.702	1.00
184_A	188_D	0.702	1.00
70_S	74_V	0.697	1.00
77_G	219_S	0.697	1.00
92_N	95_K	0.696	1.00
77_G	166_A	0.696	1.00
22_Y	25_I	0.692	1.00
233_T	239_Q	0.691	1.00
208_F	211_A	0.690	1.00
54_I	57_F	0.688	1.00
177_I	204_S	0.683	1.00
116_G	228_V	0.679	1.00
47_L	50_Y	0.674	1.00
88_L	100_F	0.674	1.00
269_T	273_I	0.672	1.00
105_I	108_L	0.669	1.00
200_L	203_N	0.666	1.00
80_L	159_V	0.666	1.00
60_T	63_L	0.666	1.00
33_M	42_P	0.666	1.00
56_T	60_T	0.661	1.00
222_I	240_T	0.661	1.00
184_A	187_L	0.657	1.00
57_F	61_N	0.656	1.00
92_N	97_R	0.655	1.00
207_S	211_A	0.653	1.00
170_Y	174_F	0.650	1.00
14_A	18_A	0.649	1.00
30_M	35_W	0.647	1.00
69_L	155_V	0.647	1.00
32_F	46_G	0.646	1.00
69_L	154_L	0.645	1.00
34_N	43_T	0.644	1.00
44_F	48_E	0.642	1.00
179_K	186_R	0.642	1.00
8_I	11_A	0.641	1.00
154_L	230_S	0.639	1.00
87_L	92_N	0.638	1.00
258_T	262_T	0.637	1.00
121_W	124_N	0.637	1.00
21_L	25_I	0.636	1.00
27_N	258_T	0.636	1.00
162_Y	218_F	0.635	1.00
208_F	212_T	0.632	1.00
94_N	100_F	0.632	1.00
44_F	47_L	0.631	1.00
74_V	78_N	0.630	1.00
104_V	164_G	0.629	1.00
84_I	104_V	0.626	1.00
245_M	260_V	0.624	1.00
153_S	157_V	0.624	1.00
93_S	98_S	0.617	1.00
243_L	246_Y	0.615	1.00
17_S	20_L	0.615	1.00
86_A	200_L	0.614	1.00
119_W	122_L	0.613	1.00
16_F	20_L	0.612	1.00
101_L	168_L	0.612	1.00
255_S	258_T	0.611	1.00
42_P	45_V	0.603	1.00
77_G	159_V	0.601	1.00
95_K	99_T	0.596	1.00
50_Y	259_A	0.595	1.00
113_A	228_V	0.592	1.00
53_V	260_V	0.589	1.00
52_I	253_Y	0.589	1.00
19_I	24_V	0.589	1.00
12_P	15_I	0.588	1.00
96_A	100_F	0.587	1.00
197_Y	200_L	0.587	1.00
124_N	127_I	0.584	1.00
18_A	22_Y	0.584	1.00
62_S	241_S	0.583	1.00
53_V	256_Q	0.583	1.00
46_G	50_Y	0.580	1.00
224_D	228_V	0.579	1.00
70_S	219_S	0.579	1.00
58_Q	239_Q	0.578	1.00
209_I	212_T	0.576	1.00
212_T	215_L	0.576	1.00
33_M	44_F	0.575	1.00
112_M	116_G	0.575	1.00
69_L	73_L	0.571	1.00
58_Q	244_Y	0.569	1.00
153_S	229_L	0.569	1.00
217_L	221_R	0.567	1.00
158_S	161_A	0.566	1.00
57_F	60_T	0.563	1.00
195_I	199_I	0.562	1.00
66_S	220_F	0.560	1.00
218_F	221_R	0.559	1.00
242_E	264_I	0.555	1.00
31_S	262_T	0.554	1.00
240_T	244_Y	0.552	1.00
28_A	32_F	0.552	1.00
108_L	164_G	0.550	1.00
116_G	120_L	0.549	1.00
78_N	82_I	0.549	1.00
9_L	12_P	0.548	1.00
85_A	171_L	0.544	1.00
108_L	165_I	0.541	1.00
258_T	261_A	0.540	1.00
14_A	17_S	0.540	1.00
98_S	102_S	0.539	1.00
154_L	158_S	0.539	1.00
21_L	24_V	0.537	1.00
158_S	222_I	0.537	1.00
102_S	106_Y	0.536	1.00
35_W	42_P	0.532	1.00
224_D	227_Y	0.531	1.00
103_I	107_P	0.529	1.00
169_F	207_S	0.528	1.00
191_S	197_Y	0.528	1.00
74_V	219_S	0.527	1.00
84_I	87_L	0.525	1.00
161_A	164_G	0.525	1.00
92_N	192_A	0.523	1.00
219_S	222_I	0.522	1.00
33_M	43_T	0.520	1.00
273_I	276_A	0.520	1.00
31_S	259_A	0.519	1.00
226_P	243_L	0.519	1.00
183_E	186_R	0.514	1.00
115_N	161_A	0.509	1.00
97_R	101_L	0.508	1.00
70_S	220_F	0.508	1.00
264_I	268_A	0.508	1.00
107_P	164_G	0.508	1.00
101_L	175_M	0.506	1.00
61_N	68_E	0.504	1.00
43_T	46_G	0.502	1.00
161_A	225_L	0.502	1.00
80_L	83_F	0.502	1.00
230_S	239_Q	0.500	1.00
66_S	242_E	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4tquM	1	0.9545	100	0.266	Contact Map
2onkC	2	0.8636	100	0.293	Contact Map
3d31C	2	0.8671	100	0.307	Contact Map
3rlfF	1	0.9336	100	0.33	Contact Map
3rlfG	1	0.9336	100	0.35	Contact Map
4tquN	1	0.8881	100	0.387	Contact Map
4ymuD	2	0.7483	99.9	0.489	Contact Map
3tuiA	2	0.7273	99.9	0.524	Contact Map
2l2tA	2	0.1399	17.2	0.943	Contact Map
2kluA	1	0.1259	16.1	0.944	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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