Q97UX3 - SULSO - GREMLIN Contacts

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Q97UX3 - Uncharacterized protein

UniProt:	Q97UX3	Sequences: MKILKYLLPYVTITSFNYYFAKDAITFSSPIFFNLIRYVISSIIFLSISRGKILFNRDVIQLAVYTTVSSLLWAYGLLYVSPAESAVLSYTMPLFSIPISFIILLERPAVLEIVGVVIGFSGVILYGLPLVHGLTLFGSIITIVNALFWGLFTVFYRKLKGYDPITVNASQFSIGSIILALLLPIHHNIDPNPEFYIGIAYTSTLGGAISFFLWNMMVKAEKIPKVTVLSFSVPILTTLVEFLLYHVLPFPIQLFGIFLMFLGILISRSRTLLS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	274 (261)
Sequences:	35235 (26185)
Seq/√Len:	1620.8

ECOLI - EAMA YICL YTFF YHBE YIJE YDDG YEDA RHTA RARD
BACSU - YDEK YOAV YXXF YWFM YVBV YDFC YCBK YETK YBFH YRDR YDED YCXC YYAM YOJE
HALSA - Q9HHP6 Q9HQ34 Q9HPI0
SULSO - Q97UX3 Q97X73 Q97UE8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
76_G	142_T	3.385	1.00
84_E	139_S	2.918	1.00
6_Y	216_M	2.897	1.00
216_M	220_A	2.739	1.00
241_E	247_V	2.643	1.00
75_Y	141_I	2.474	1.00
42_S	173_S	2.418	1.00
35_L	180_A	2.360	1.00
20_F	201_Y	2.338	1.00
216_M	219_K	2.333	1.00
115_G	263_G	2.317	1.00
72_L	144_V	2.299	1.00
15_S	236_L	2.223	1.00
86_A	237_T	2.206	1.00
106_E	157_R	2.147	1.00
40_I	203_S	2.127	1.00
22_K	247_V	2.114	1.00
21_A	74_A	2.072	1.00
99_I	154_V	2.067	1.00
95_F	146_A	2.060	1.00
72_L	141_I	2.017	1.00
7_L	217_M	1.983	1.00
101_F	108_P	1.927	1.00
68_V	148_F	1.883	1.00
193_P	197_I	1.846	1.00
15_S	240_V	1.805	1.00
39_V	176_S	1.789	1.00
96_S	227_T	1.784	1.00
100_S	106_E	1.774	1.00
80_V	139_S	1.765	1.00
97_I	116_V	1.732	1.00
203_S	208_A	1.721	1.00
12_T	236_L	1.716	1.00
79_Y	137_F	1.715	1.00
42_S	176_S	1.706	1.00
46_L	169_A	1.687	1.00
109_A	112_E	1.687	1.00
140_I	144_V	1.674	1.00
91_T	95_F	1.672	1.00
119_G	231_F	1.664	1.00
80_V	138_G	1.656	1.00
16_F	201_Y	1.650	1.00
13_I	205_L	1.638	1.00
27_F	195_F	1.633	1.00
95_F	150_G	1.614	1.00
28_S	195_F	1.609	1.00
72_L	148_F	1.588	1.00
222_K	225_K	1.582	1.00
85_S	142_T	1.563	1.00
46_L	50_R	1.563	1.00
192_N	195_F	1.553	1.00
163_D	166_T	1.547	1.00
177_I	181_L	1.543	1.00
250_F	253_Q	1.537	1.00
47_S	50_R	1.509	1.00
75_Y	79_Y	1.503	1.00
136_L	139_S	1.491	1.00
53_I	56_N	1.481	1.00
156_Y	215_N	1.474	1.00
10_Y	217_M	1.472	1.00
95_F	147_L	1.418	1.00
24_A	33_F	1.412	1.00
6_Y	213_L	1.409	1.00
185_I	188_N	1.407	1.00
251_P	255_F	1.399	1.00
35_L	176_S	1.388	1.00
115_G	267_S	1.373	1.00
100_S	104_L	1.367	1.00
41_S	172_F	1.366	1.00
33_F	202_T	1.364	1.00
43_I	47_S	1.354	1.00
80_V	84_E	1.323	1.00
194_E	197_I	1.323	1.00
125_L	259_L	1.320	1.00
44_I	208_A	1.315	1.00
240_V	244_L	1.286	1.00
75_Y	78_L	1.283	1.00
19_Y	240_V	1.281	1.00
194_E	198_G	1.273	1.00
150_G	154_V	1.272	1.00
115_G	266_I	1.270	1.00
83_A	238_T	1.269	1.00
82_P	241_E	1.265	1.00
99_I	103_I	1.261	1.00
23_D	198_G	1.260	1.00
87_V	257_I	1.255	1.00
16_F	240_V	1.253	1.00
29_S	32_F	1.252	1.00
61_Q	155_F	1.246	1.00
254_L	258_F	1.240	1.00
236_L	240_V	1.236	1.00
110_V	114_V	1.233	1.00
232_S	236_L	1.214	1.00
258_F	262_L	1.213	1.00
113_I	117_V	1.203	1.00
178_I	181_L	1.202	1.00
22_K	26_T	1.200	1.00
14_T	210_S	1.190	1.00
65_Y	151_L	1.183	1.00
125_L	252_I	1.178	1.00
119_G	263_G	1.177	1.00
117_V	121_S	1.171	1.00
60_I	174_I	1.169	1.00
79_Y	141_I	1.162	1.00
111_L	266_I	1.161	1.00
249_P	254_L	1.147	1.00
20_F	198_G	1.146	1.00
67_T	178_I	1.146	1.00
122_G	256_G	1.145	1.00
157_R	222_K	1.143	1.00
108_P	113_I	1.140	1.00
136_L	140_I	1.139	1.00
66_T	152_F	1.132	1.00
193_P	196_Y	1.132	1.00
102_I	105_L	1.117	1.00
79_Y	135_T	1.114	1.00
81_S	84_E	1.110	1.00
99_I	150_G	1.107	1.00
197_I	201_Y	1.106	1.00
80_V	142_T	1.105	1.00
37_R	207_G	1.102	1.00
53_I	57_R	1.100	1.00
64_V	178_I	1.098	1.00
10_Y	14_T	1.096	1.00
73_W	77_L	1.094	1.00
77_L	85_S	1.093	1.00
99_I	151_L	1.092	1.00
35_L	39_V	1.090	1.00
10_Y	213_L	1.089	1.00
96_S	223_I	1.089	1.00
106_E	112_E	1.088	1.00
104_L	154_V	1.086	1.00
5_K	9_P	1.081	1.00
24_A	195_F	1.074	1.00
110_V	113_I	1.071	1.00
42_S	169_A	1.069	1.00
88_L	146_A	1.055	1.00
27_F	192_N	1.054	1.00
137_F	141_I	1.051	1.00
126_Y	256_G	1.048	1.00
101_F	107_R	1.048	1.00
31_I	71_L	1.022	1.00
128_L	250_F	1.012	1.00
67_T	179_L	1.009	1.00
31_I	182_L	1.009	1.00
88_L	139_S	1.004	1.00
79_Y	138_G	1.001	1.00
34_N	74_A	1.000	1.00
218_V	226_V	1.000	1.00
21_A	77_L	0.999	1.00
55_F	58_D	0.996	1.00
82_P	245_Y	0.995	1.00
14_T	214_W	0.993	1.00
157_R	223_I	0.993	1.00
44_I	204_T	0.990	1.00
122_G	260_M	0.988	1.00
13_I	213_L	0.986	1.00
30_P	34_N	0.984	1.00
137_F	140_I	0.982	1.00
96_S	153_T	0.978	1.00
9_P	213_L	0.977	1.00
197_I	200_A	0.975	1.00
91_T	123_V	0.966	1.00
190_D	193_P	0.965	1.00
201_Y	205_L	0.965	1.00
96_S	150_G	0.956	1.00
251_P	254_L	0.953	1.00
54_L	57_R	0.950	1.00
59_V	162_Y	0.948	1.00
65_Y	148_F	0.944	1.00
19_Y	244_L	0.942	1.00
99_I	147_L	0.941	1.00
221_E	226_V	0.941	1.00
200_A	203_S	0.940	1.00
97_I	108_P	0.934	1.00
218_V	222_K	0.931	1.00
118_I	263_G	0.931	1.00
235_I	257_I	0.929	1.00
24_A	198_G	0.928	1.00
222_K	226_V	0.928	1.00
63_A	174_I	0.924	1.00
138_G	142_T	0.923	1.00
39_V	180_A	0.922	1.00
221_E	225_K	0.921	1.00
88_L	142_T	0.920	1.00
87_V	124_I	0.914	1.00
238_T	249_P	0.912	1.00
11_V	15_S	0.911	1.00
124_I	128_L	0.900	1.00
82_P	247_V	0.898	1.00
196_Y	200_A	0.892	1.00
8_L	236_L	0.890	1.00
99_I	102_I	0.885	1.00
109_A	113_I	0.880	1.00
11_V	232_S	0.879	1.00
183_L	186_H	0.878	1.00
38_Y	175_G	0.877	1.00
205_L	209_I	0.876	1.00
146_A	150_G	0.874	1.00
199_I	203_S	0.857	1.00
34_N	179_L	0.854	1.00
173_S	177_I	0.850	1.00
11_V	236_L	0.844	1.00
46_L	173_S	0.842	1.00
107_R	111_L	0.834	1.00
67_T	71_L	0.833	1.00
135_T	139_S	0.833	1.00
174_I	177_I	0.833	1.00
123_V	127_G	0.830	1.00
238_T	257_I	0.826	1.00
97_I	112_E	0.826	1.00
242_F	249_P	0.825	1.00
125_L	255_F	0.822	1.00
158_K	161_G	0.819	1.00
164_P	168_N	0.818	1.00
62_L	66_T	0.816	1.00
96_S	154_V	0.813	1.00
175_G	179_L	0.812	1.00
200_A	204_T	0.805	1.00
65_Y	155_F	0.804	1.00
168_N	171_Q	0.803	1.00
252_I	255_F	0.802	1.00
45_F	208_A	0.802	1.00
19_Y	241_E	0.798	1.00
107_R	110_V	0.794	1.00
174_I	178_I	0.794	1.00
71_L	75_Y	0.793	1.00
121_S	125_L	0.792	1.00
94_L	119_G	0.791	1.00
186_H	189_I	0.791	1.00
191_P	196_Y	0.790	1.00
217_M	226_V	0.782	1.00
170_S	174_I	0.777	1.00
209_I	213_L	0.774	1.00
242_F	248_L	0.773	1.00
255_F	259_L	0.769	1.00
63_A	67_T	0.765	1.00
169_A	173_S	0.765	1.00
192_N	196_Y	0.759	1.00
257_I	261_F	0.758	1.00
101_F	105_L	0.755	1.00
162_Y	167_V	0.755	1.00
98_P	102_I	0.753	1.00
69_S	148_F	0.748	1.00
36_I	40_I	0.744	1.00
151_L	155_F	0.741	1.00
121_S	259_L	0.739	1.00
39_V	43_I	0.733	1.00
114_V	118_I	0.732	1.00
142_T	146_A	0.732	1.00
32_F	36_I	0.730	1.00
42_S	46_L	0.725	1.00
168_N	172_F	0.720	1.00
76_G	85_S	0.719	1.00
18_Y	73_W	0.718	1.00
21_A	25_I	0.714	1.00
184_P	187_H	0.713	1.00
232_S	235_I	0.706	1.00
19_Y	82_P	0.704	1.00
80_V	85_S	0.704	1.00
44_I	47_S	0.703	1.00
88_L	143_I	0.699	1.00
69_S	152_F	0.697	1.00
7_L	229_L	0.696	1.00
149_W	153_T	0.693	1.00
28_S	32_F	0.692	1.00
241_E	245_Y	0.688	1.00
18_Y	86_A	0.685	1.00
166_T	170_S	0.682	1.00
168_N	215_N	0.678	1.00
108_P	112_E	0.677	1.00
44_I	203_S	0.676	1.00
13_I	206_G	0.674	1.00
157_R	160_K	0.673	1.00
152_F	215_N	0.672	1.00
106_E	224_P	0.671	1.00
93_P	231_F	0.671	1.00
68_V	72_L	0.667	1.00
91_T	94_L	0.666	1.00
162_Y	166_T	0.666	1.00
264_I	267_S	0.666	1.00
249_P	253_Q	0.664	1.00
76_G	138_G	0.664	1.00
49_S	169_A	0.660	1.00
7_L	221_E	0.659	1.00
40_I	44_I	0.658	1.00
28_S	33_F	0.657	1.00
262_L	266_I	0.657	1.00
195_F	198_G	0.652	1.00
25_I	77_L	0.650	1.00
212_F	216_M	0.648	1.00
176_S	180_A	0.644	1.00
263_G	267_S	0.641	1.00
198_G	201_Y	0.640	1.00
250_F	254_L	0.638	1.00
95_F	143_I	0.637	1.00
62_L	65_Y	0.631	1.00
63_A	66_T	0.627	1.00
36_I	199_I	0.627	1.00
149_W	214_W	0.627	1.00
238_T	242_F	0.625	1.00
253_Q	257_I	0.619	1.00
127_G	139_S	0.616	1.00
97_I	101_F	0.614	1.00
73_W	85_S	0.613	1.00
48_I	165_I	0.612	1.00
90_Y	123_V	0.610	1.00
120_F	231_F	0.608	1.00
17_N	206_G	0.606	1.00
76_G	80_V	0.604	1.00
184_P	189_I	0.603	1.00
239_L	243_L	0.600	1.00
228_V	267_S	0.596	1.00
41_S	208_A	0.594	1.00
112_E	222_K	0.593	1.00
40_I	199_I	0.589	1.00
141_I	144_V	0.588	1.00
184_P	188_N	0.588	1.00
15_S	233_V	0.586	1.00
173_S	176_S	0.585	1.00
201_Y	204_T	0.583	1.00
248_L	252_I	0.582	1.00
98_P	116_V	0.582	1.00
87_V	127_G	0.581	1.00
217_M	221_E	0.581	1.00
248_L	253_Q	0.580	1.00
19_Y	237_T	0.578	1.00
239_L	242_F	0.574	1.00
91_T	119_G	0.573	1.00
13_I	210_S	0.571	1.00
43_I	46_L	0.571	1.00
67_T	182_L	0.570	1.00
90_Y	146_A	0.569	1.00
153_T	227_T	0.568	1.00
104_L	158_K	0.567	1.00
153_T	214_W	0.565	1.00
60_I	178_I	0.565	1.00
23_D	26_T	0.564	1.00
100_S	224_P	0.562	1.00
59_V	167_V	0.562	1.00
60_I	64_V	0.558	1.00
190_D	196_Y	0.553	1.00
96_S	100_S	0.551	1.00
170_S	173_S	0.549	1.00
41_S	203_S	0.547	1.00
23_D	245_Y	0.546	1.00
66_T	211_F	0.546	1.00
118_I	266_I	0.545	1.00
86_A	90_Y	0.545	1.00
17_N	202_T	0.545	1.00
231_F	264_I	0.544	1.00
103_I	151_L	0.544	1.00
8_L	11_V	0.543	1.00
90_Y	93_P	0.543	1.00
37_R	70_S	0.542	1.00
9_P	13_I	0.542	1.00
51_G	163_D	0.540	1.00
147_L	151_L	0.538	1.00
74_A	78_L	0.536	1.00
152_F	156_Y	0.535	1.00
25_I	78_L	0.535	1.00
40_I	43_I	0.535	1.00
41_S	207_G	0.535	1.00
183_L	187_H	0.534	1.00
230_S	233_V	0.531	1.00
69_S	73_W	0.531	1.00
91_T	146_A	0.530	1.00
94_L	116_V	0.529	1.00
187_H	190_D	0.529	1.00
169_A	172_F	0.527	1.00
240_V	243_L	0.526	1.00
61_Q	64_V	0.526	1.00
11_V	233_V	0.523	1.00
7_L	214_W	0.522	1.00
66_T	171_Q	0.521	1.00
17_N	74_A	0.516	1.00
73_W	145_N	0.513	1.00
185_I	189_I	0.513	1.00
242_F	254_L	0.513	1.00
114_V	121_S	0.510	1.00
238_T	241_E	0.510	1.00
31_I	75_Y	0.506	1.00
235_I	261_F	0.505	1.00
23_D	27_F	0.504	1.00
97_I	224_P	0.503	1.00
15_S	237_T	0.503	1.00
59_V	63_A	0.502	1.00
121_S	124_I	0.502	1.00
125_L	253_Q	0.501	1.00
152_F	171_Q	0.501	1.00
213_L	216_M	0.501	1.00
38_Y	179_L	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2i68A	2	0.281	98.7	0.762	Contact Map
3b5dA	2	0.3686	98.6	0.77	Contact Map
4o93B	1	0.2737	10.4	0.943	Contact Map
4o9uB	2	0.2737	10.1	0.943	Contact Map
1u7gA	3	0.8102	3.7	0.954	Contact Map
4ub6R	1	0.1241	2.5	0.958	Contact Map
2cfqA	1	0.6095	2.4	0.958	Contact Map
4rngA	2	0.1752	1.6	0.962	Contact Map
2wswA	3	0.5511	1.5	0.962	Contact Map
4he8J	1	0.5547	1.3	0.964	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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