Q97UV3 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97UV3 - Third ORF in transposon ISC1225

UniProt:	Q97UV3	Sequences: MVSRWRDWVVQPRGTRGTTTATTKYQNMVLLLAFVPQVNGMSKDEIVKLLMEQIVGMGLKVGLVTLDAGFYTVEVLKFISQFKFVIGVPVGDVKIYEEFDGEYTTNSKRHKKEEQVKFRLLVYGKEIVKKRKKTVVYFARATNLDLPKREVLKLYNKVRSPIETSYRNIKAFLPFTSSTKFIFRELIFVLAMIFYSLYTVFKNVMTREEFRLLLILCFLDDLSDLKDFIFNLEETLINTIDLFLWR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	246 (206)
Sequences:	181 (121)
Seq/√Len:	8.4

HALSA - Q9HHP9 O51989 O51959
SULSO - Q97UV3 Q97Y40 Q97TV3 Q97YD0 Q97UW1 Q97Y64 Q97XW2 Q97XT0 Q97V50 Q97WW6 Q97YS0 Q7LXX4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
20_T	166_Y	4.887	0.99
66_L	165_S	4.783	0.99
61_V	85_V	3.732	0.96
21_A	33_A	3.406	0.94
164_T	167_R	2.851	0.86
31_L	166_Y	2.845	0.86
142_T	160_S	2.774	0.85
68_A	87_G	2.683	0.82
142_T	178_S	2.571	0.80
67_D	159_R	2.438	0.76
54_I	64_V	2.376	0.74
172_F	195_Y	2.357	0.73
145_D	157_K	2.355	0.73
61_V	101_G	2.278	0.70
37_Q	65_T	2.169	0.66
46_I	185_E	2.169	0.66
186_L	190_L	2.152	0.66
54_I	84_F	2.038	0.61
21_A	196_S	1.997	0.60
20_T	189_V	1.988	0.59
91_G	101_G	1.860	0.54
79_I	82_F	1.857	0.54
71_Y	88_V	1.816	0.52
59_L	104_T	1.800	0.52
47_V	50_L	1.783	0.51
166_Y	176_T	1.780	0.51
31_L	192_M	1.766	0.50
50_L	84_F	1.759	0.50
21_A	54_I	1.741	0.49
19_T	50_L	1.735	0.49
84_F	180_K	1.723	0.48
37_Q	47_V	1.710	0.48
142_T	195_Y	1.650	0.45
41_M	85_V	1.607	0.43
174_P	187_I	1.605	0.43
27_N	77_K	1.588	0.43
183_F	187_I	1.581	0.42
104_T	149_R	1.549	0.41
209_E	212_L	1.542	0.41
30_L	105_T	1.538	0.41
194_F	205_M	1.526	0.40
50_L	195_Y	1.493	0.39
66_L	71_Y	1.475	0.38
86_I	144_L	1.461	0.38
170_K	195_Y	1.452	0.37
143_N	169_I	1.430	0.36
156_N	196_S	1.428	0.36
19_T	46_I	1.402	0.35
62_G	191_A	1.396	0.35
19_T	84_F	1.373	0.34
33_A	66_L	1.366	0.34
219_L	224_D	1.363	0.34
29_V	62_G	1.339	0.33
16_R	166_Y	1.335	0.33
45_E	110_H	1.312	0.32
31_L	71_Y	1.310	0.32
159_R	163_E	1.310	0.32
155_Y	162_I	1.293	0.31
175_F	196_S	1.279	0.31
140_R	143_N	1.274	0.30
33_A	51_M	1.251	0.30
63_L	171_A	1.249	0.30
173_L	177_S	1.248	0.30
75_V	162_I	1.240	0.29
59_L	64_V	1.216	0.28
87_G	176_T	1.213	0.28
202_K	206_T	1.184	0.27
15_T	160_S	1.184	0.27
178_S	188_F	1.180	0.27
137_Y	189_V	1.179	0.27
20_T	188_F	1.172	0.27
21_A	51_M	1.168	0.27
61_V	98_E	1.166	0.27
71_Y	164_T	1.165	0.27
84_F	143_N	1.164	0.27
61_V	166_Y	1.154	0.26
50_L	169_I	1.150	0.26
164_T	200_V	1.149	0.26
59_L	82_F	1.132	0.26
8_W	183_F	1.126	0.25
93_V	96_Y	1.119	0.25
67_D	163_E	1.112	0.25
188_F	195_Y	1.106	0.25
11_Q	185_E	1.105	0.25
13_R	31_L	1.077	0.24
170_K	178_S	1.071	0.24
163_E	184_R	1.061	0.23
161_P	191_A	1.061	0.23
164_T	197_L	1.056	0.23
63_L	82_F	1.041	0.23
51_M	76_L	1.038	0.23
142_T	172_F	1.028	0.22
84_F	202_K	1.027	0.22
18_T	79_I	1.025	0.22
11_Q	31_L	1.019	0.22
120_L	208_E	1.014	0.22
11_Q	16_R	1.012	0.22
173_L	185_E	1.009	0.22
46_I	50_L	1.007	0.22
140_R	178_S	1.002	0.22
28_M	62_G	0.998	0.22
76_L	164_T	0.995	0.22
38_V	197_L	0.994	0.21
85_V	155_Y	0.984	0.21
184_R	198_Y	0.981	0.21
142_T	170_K	0.974	0.21
62_G	160_S	0.971	0.21
160_S	178_S	0.968	0.21
210_F	213_L	0.966	0.21
156_N	180_K	0.966	0.21
14_G	85_V	0.964	0.21
45_E	68_A	0.963	0.21
54_I	59_L	0.957	0.20
29_V	167_R	0.954	0.20
20_T	162_I	0.954	0.20
170_K	188_F	0.951	0.20
51_M	186_L	0.940	0.20
51_M	70_F	0.939	0.20
123_Y	156_N	0.937	0.20
71_Y	89_P	0.931	0.20
143_N	188_F	0.922	0.19
50_L	80_S	0.905	0.19
10_V	61_V	0.905	0.19
16_R	91_G	0.904	0.19
160_S	212_L	0.904	0.19
36_P	84_F	0.901	0.19
47_V	54_I	0.896	0.19
87_G	180_K	0.887	0.19
183_F	197_L	0.873	0.18
48_K	132_K	0.871	0.18
179_T	186_L	0.870	0.18
85_V	93_V	0.860	0.18
156_N	161_P	0.856	0.18
85_V	115_Q	0.853	0.18
18_T	118_F	0.853	0.18
23_T	37_Q	0.853	0.18
76_L	86_I	0.848	0.18
75_V	166_Y	0.847	0.18
67_D	70_F	0.847	0.18
12_P	65_T	0.841	0.17
29_V	160_S	0.841	0.17
58_G	88_V	0.840	0.17
74_E	107_S	0.839	0.17
129_K	133_K	0.838	0.17
12_P	210_F	0.838	0.17
60_K	83_K	0.836	0.17
88_V	161_P	0.835	0.17
30_L	108_K	0.826	0.17
142_T	190_L	0.826	0.17
75_V	164_T	0.822	0.17
168_N	191_A	0.821	0.17
173_L	192_M	0.821	0.17
96_Y	99_F	0.818	0.17
86_I	91_G	0.816	0.17
50_L	53_Q	0.813	0.17
35_V	164_T	0.813	0.17
131_R	165_S	0.812	0.17
66_L	160_S	0.804	0.17
70_F	167_R	0.797	0.16
79_I	115_Q	0.797	0.16
160_S	186_L	0.786	0.16
47_V	194_F	0.784	0.16
42_S	72_T	0.783	0.16
157_K	182_I	0.782	0.16
51_M	201_F	0.779	0.16
190_L	201_F	0.776	0.16
118_F	187_I	0.771	0.16
76_L	177_S	0.768	0.16
31_L	203_N	0.767	0.16
32_L	137_Y	0.766	0.16
18_T	124_G	0.764	0.16
143_N	160_S	0.761	0.16
97_E	194_F	0.754	0.15
21_A	69_G	0.752	0.15
85_V	119_R	0.747	0.15
151_V	154_L	0.746	0.15
28_M	207_R	0.746	0.15
155_Y	163_E	0.746	0.15
34_F	43_K	0.745	0.15
71_Y	197_L	0.743	0.15
18_T	148_K	0.742	0.15
51_M	117_K	0.741	0.15
12_P	175_F	0.740	0.15
72_T	179_T	0.740	0.15
38_V	51_M	0.738	0.15
17_G	66_L	0.738	0.15
12_P	131_R	0.732	0.15
45_E	168_N	0.731	0.15
191_A	208_E	0.730	0.15
18_T	76_L	0.729	0.15
162_I	198_Y	0.726	0.15
199_T	202_K	0.725	0.15
87_G	122_V	0.724	0.15
142_T	186_L	0.722	0.15
27_N	81_Q	0.722	0.15
169_I	188_F	0.721	0.15
43_K	174_P	0.719	0.15
49_L	69_G	0.713	0.15
70_F	176_T	0.712	0.15
169_I	203_N	0.710	0.14
89_P	96_Y	0.707	0.14
172_F	225_L	0.706	0.14
37_Q	75_V	0.702	0.14
18_T	68_A	0.696	0.14
129_K	143_N	0.694	0.14
219_L	225_L	0.692	0.14
100_D	195_Y	0.691	0.14
159_R	184_R	0.690	0.14
48_K	178_S	0.690	0.14
80_S	208_E	0.682	0.14
21_A	205_M	0.682	0.14
68_A	185_E	0.680	0.14
12_P	161_P	0.679	0.14
213_L	224_D	0.679	0.14
112_K	151_V	0.675	0.14
141_A	202_K	0.675	0.14
208_E	211_R	0.668	0.14
75_V	143_N	0.657	0.13
118_F	180_K	0.656	0.13
16_R	41_M	0.655	0.13
59_L	102_E	0.654	0.13
8_W	22_T	0.651	0.13
92_D	100_D	0.648	0.13
99_F	197_L	0.645	0.13
34_F	207_R	0.642	0.13
65_T	174_P	0.640	0.13
22_T	133_K	0.638	0.13
48_K	78_F	0.637	0.13
92_D	98_E	0.637	0.13
96_Y	136_V	0.636	0.13
85_V	123_Y	0.635	0.13
59_L	122_V	0.633	0.13
80_S	188_F	0.632	0.13
70_F	166_Y	0.631	0.13
8_W	164_T	0.629	0.13
122_V	165_S	0.627	0.13
191_A	212_L	0.626	0.13
172_F	191_A	0.624	0.13
13_R	51_M	0.621	0.13
23_T	28_M	0.621	0.13
129_K	142_T	0.619	0.13
12_P	199_T	0.616	0.13
95_I	174_P	0.613	0.13
48_K	187_I	0.613	0.13
25_Y	202_K	0.613	0.13
22_T	51_M	0.612	0.13
19_T	75_V	0.608	0.12
90_V	93_V	0.606	0.12
10_V	20_T	0.605	0.12
35_V	49_L	0.605	0.12
15_T	199_T	0.602	0.12
76_L	162_I	0.601	0.12
16_R	55_V	0.599	0.12
60_K	133_K	0.597	0.12
66_L	79_I	0.597	0.12
96_Y	104_T	0.592	0.12
84_F	212_L	0.592	0.12
180_K	193_I	0.588	0.12
143_N	178_S	0.585	0.12
108_K	164_T	0.584	0.12
86_I	191_A	0.582	0.12
23_T	33_A	0.582	0.12
61_V	81_Q	0.580	0.12
11_Q	162_I	0.571	0.12
69_G	153_K	0.569	0.12
219_L	223_S	0.567	0.12
97_E	180_K	0.565	0.12
174_P	177_S	0.564	0.12
87_G	155_Y	0.563	0.12
59_L	68_A	0.562	0.12
23_T	36_P	0.562	0.12
179_T	207_R	0.561	0.12
212_L	225_L	0.561	0.12
48_K	103_Y	0.555	0.12
95_I	98_E	0.555	0.12
27_N	33_A	0.555	0.12
140_R	160_S	0.554	0.12
11_Q	197_L	0.551	0.11
141_A	186_L	0.551	0.11
25_Y	36_P	0.546	0.11
188_F	210_F	0.545	0.11
30_L	135_V	0.543	0.11
195_Y	202_K	0.542	0.11
69_G	197_L	0.539	0.11
110_H	150_E	0.539	0.11
76_L	85_V	0.538	0.11
98_E	101_G	0.538	0.11
103_Y	120_L	0.538	0.11
20_T	32_L	0.537	0.11
64_V	124_G	0.536	0.11
77_K	208_E	0.528	0.11
68_A	176_T	0.527	0.11
79_I	185_E	0.526	0.11
16_R	198_Y	0.525	0.11
109_R	183_F	0.525	0.11
174_P	181_F	0.522	0.11
171_A	191_A	0.517	0.11
140_R	188_F	0.517	0.11
82_F	146_L	0.516	0.11
104_T	174_P	0.511	0.11
63_L	191_A	0.510	0.11
146_L	190_L	0.506	0.11
106_N	199_T	0.505	0.11
123_Y	142_T	0.505	0.11
102_E	164_T	0.504	0.11
88_V	91_G	0.503	0.11
9_V	49_L	0.502	0.11
140_R	202_K	0.501	0.11
104_T	113_E	0.500	0.11

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1musA	2	0.9065	98.7	0.849	Contact Map
2r37A	3	0.2602	8.2	0.965	Contact Map
3uowA	2	0.2967	5	0.969	Contact Map
1v66A	1	0.2602	3.9	0.97	Contact Map
1jvnA	1	0.3496	3.5	0.971	Contact Map
2o8rA	2	0.8374	3.2	0.971	Contact Map
3hbaA	2	0.3455	3.1	0.971	Contact Map
4w22K	1	0.3049	3.1	0.972	Contact Map
3fj1A	2	0.3984	2.7	0.972	Contact Map
2ou2A	1	0.3984	2.7	0.973	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0081 seconds.