Q97UV2 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97UV2 - Uncharacterized protein

UniProt:	Q97UV2	Sequences: MPCRGLHAIPAGPPEFPELATIYVVCGDKLNVMIDAGVTNSIMDSSFLEKLDLVILTHIHIDHIGLLPEILDRYKNAKVMIKNGFKKFLTTEDGVRRLNESSEKVLGDLYYIYGEFTKIDPDKVVEVEGGEMIDIGDGKTLKIIYTPGHAKHHISVVSDDILFTGDSGGAYFNGAVIPTTPPPLDYDNYVNSLRLQISLKPKVVGLAHGGLVSPNILEQHLDQMLGKESFDIGEIDIGGIGGEILRKQVEVNLRGLNEALGRNKKTL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	267 (220)
Sequences:	7107 (5755)
Seq/√Len:	388.0

ECOLI - GLO2 YCBL
BACSU - YQJP YOBT YFLN PKSB YYBB YQGX
HALSA - Q9HNJ9 Q9HRG5 Q9HSD1 Q9HSH2 Q9HQ50 Q9HNJ2 O54647
SULSO - Q97UV2 Q97VU4 Q97VU0 Q7LYK3 Q97WC2 Q97U88 Q97XZ1 Q97YZ2 Q97UR2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
146_T	155_S	4.242	1.00
56_L	67_L	3.616	1.00
160_D	202_K	3.218	1.00
55_I	156_V	2.887	1.00
30_L	52_D	2.831	1.00
34_I	57_T	2.772	1.00
194_R	225_L	2.738	1.00
132_M	140_T	2.718	1.00
129_G	195_L	2.718	1.00
53_L	80_M	2.716	1.00
134_D	140_T	2.553	1.00
83_N	128_E	2.318	1.00
32_V	53_L	2.308	1.00
143_I	154_I	2.249	1.00
132_M	142_K	2.221	1.00
197_I	218_E	2.217	1.00
78_K	125_V	2.208	1.00
34_I	163_F	2.139	1.00
197_I	222_D	2.129	1.00
143_I	156_V	2.129	1.00
74_Y	77_A	2.099	1.00
153_H	165_G	2.050	1.00
220_H	224_M	2.046	1.00
53_L	78_K	2.025	1.00
244_I	247_K	2.016	1.00
82_K	145_Y	1.960	1.00
222_D	226_G	1.928	1.00
23_Y	163_F	1.900	1.00
80_M	125_V	1.891	1.00
23_Y	205_G	1.871	1.00
82_K	154_I	1.775	1.00
224_M	228_E	1.746	1.00
142_K	158_S	1.710	1.00
185_D	188_N	1.686	1.00
57_T	165_G	1.686	1.00
157_V	160_D	1.673	1.00
161_I	205_G	1.670	1.00
227_K	231_D	1.660	1.00
146_T	192_S	1.627	1.00
195_L	198_S	1.610	1.00
128_E	131_E	1.587	1.00
42_I	47_F	1.570	1.00
221_L	225_L	1.566	1.00
197_I	225_L	1.546	1.00
42_I	45_S	1.532	1.00
125_V	131_E	1.498	1.00
224_M	227_K	1.496	1.00
86_K	90_T	1.468	1.00
36_A	54_V	1.466	1.00
228_E	231_D	1.454	1.00
157_V	162_L	1.444	1.00
85_F	152_H	1.441	1.00
81_I	85_F	1.423	1.00
146_T	153_H	1.415	1.00
127_V	154_I	1.378	1.00
83_N	126_E	1.358	1.00
134_D	137_D	1.352	1.00
26_C	31_N	1.342	1.00
203_V	213_S	1.341	1.00
142_K	157_V	1.337	1.00
80_M	127_V	1.332	1.00
206_L	209_G	1.318	1.00
228_E	232_I	1.317	1.00
194_R	198_S	1.307	1.00
161_I	203_V	1.294	1.00
69_E	73_R	1.289	1.00
118_K	121_P	1.278	1.00
229_S	233_G	1.278	1.00
30_L	50_K	1.277	1.00
43_M	47_F	1.272	1.00
162_L	199_L	1.253	1.00
32_V	55_I	1.253	1.00
157_V	201_P	1.237	1.00
25_V	34_I	1.225	1.00
243_E	251_V	1.223	1.00
148_G	192_S	1.222	1.00
31_N	51_L	1.221	1.00
220_H	223_Q	1.213	1.00
178_P	183_P	1.208	1.00
218_E	222_D	1.206	1.00
167_S	196_Q	1.183	1.00
160_D	200_K	1.177	1.00
142_K	199_L	1.176	1.00
177_I	182_P	1.175	1.00
190_V	194_R	1.170	1.00
194_R	197_I	1.167	1.00
71_L	79_V	1.164	1.00
177_I	183_P	1.163	1.00
245_L	249_V	1.158	1.00
67_L	79_V	1.153	1.00
24_V	31_N	1.144	1.00
163_F	205_G	1.137	1.00
22_I	37_G	1.126	1.00
164_T	204_V	1.125	1.00
225_L	229_S	1.123	1.00
86_K	126_E	1.116	1.00
36_A	67_L	1.114	1.00
32_V	141_L	1.114	1.00
243_E	247_K	1.114	1.00
223_Q	227_K	1.102	1.00
246_R	250_E	1.096	1.00
140_T	158_S	1.088	1.00
141_L	156_V	1.071	1.00
188_N	191_N	1.071	1.00
231_D	234_E	1.068	1.00
190_V	229_S	1.067	1.00
29_K	52_D	1.060	1.00
219_Q	223_Q	1.043	1.00
234_E	237_I	1.031	1.00
44_D	47_F	1.026	1.00
24_V	33_M	1.025	1.00
155_S	162_L	1.010	1.00
27_G	137_D	1.009	1.00
233_G	236_D	1.007	1.00
28_D	137_D	1.005	1.00
34_I	156_V	1.003	1.00
234_E	238_G	1.001	1.00
42_I	46_S	1.001	1.00
69_E	72_D	0.992	1.00
155_S	196_Q	0.984	1.00
140_T	159_D	0.972	1.00
190_V	225_L	0.971	1.00
127_V	143_I	0.966	1.00
180_T	183_P	0.965	1.00
177_I	180_T	0.962	1.00
169_G	172_F	0.954	1.00
130_G	142_K	0.952	1.00
52_D	78_K	0.948	1.00
177_I	181_P	0.938	1.00
129_G	145_Y	0.927	1.00
33_M	36_A	0.927	1.00
58_H	166_D	0.924	1.00
45_S	49_E	0.912	1.00
30_L	53_L	0.910	1.00
220_H	228_E	0.910	1.00
233_G	237_I	0.908	1.00
21_T	209_G	0.889	1.00
178_P	181_P	0.889	1.00
197_I	221_L	0.875	1.00
157_V	199_L	0.873	1.00
54_V	77_A	0.869	1.00
63_H	166_D	0.860	1.00
82_K	85_F	0.846	1.00
44_D	73_R	0.840	1.00
201_P	204_V	0.835	1.00
32_V	135_I	0.831	1.00
25_V	141_L	0.829	1.00
224_M	231_D	0.828	1.00
221_L	224_M	0.822	1.00
178_P	182_P	0.821	1.00
167_S	192_S	0.820	1.00
54_V	67_L	0.817	1.00
144_I	157_V	0.815	1.00
226_G	230_F	0.815	1.00
246_R	249_V	0.814	1.00
189_Y	193_L	0.813	1.00
55_I	154_I	0.811	1.00
58_H	63_H	0.809	1.00
247_K	250_E	0.806	1.00
56_L	64_I	0.805	1.00
22_I	36_A	0.802	1.00
215_N	219_Q	0.802	1.00
43_M	48_L	0.800	1.00
203_V	211_L	0.799	1.00
81_I	89_L	0.799	1.00
64_I	67_L	0.797	1.00
238_G	251_V	0.790	1.00
116_F	120_D	0.790	1.00
84_G	87_K	0.787	1.00
223_Q	228_E	0.784	1.00
231_D	238_G	0.784	1.00
187_D	191_N	0.772	1.00
29_K	136_G	0.768	1.00
42_I	48_L	0.766	1.00
60_H	63_H	0.765	1.00
191_N	195_L	0.764	1.00
22_I	33_M	0.763	1.00
150_A	153_H	0.763	1.00
54_V	70_I	0.763	1.00
200_K	218_E	0.762	1.00
245_L	248_Q	0.761	1.00
191_N	194_R	0.760	1.00
87_K	90_T	0.758	1.00
194_R	229_S	0.755	1.00
85_F	150_A	0.755	1.00
184_L	187_D	0.753	1.00
68_P	72_D	0.752	1.00
248_Q	252_N	0.747	1.00
239_G	242_G	0.744	1.00
220_H	227_K	0.743	1.00
35_D	58_H	0.739	1.00
236_D	240_I	0.738	1.00
31_N	48_L	0.737	1.00
167_S	189_Y	0.736	1.00
243_E	248_Q	0.734	1.00
192_S	195_L	0.734	1.00
226_G	229_S	0.729	1.00
43_M	46_S	0.727	1.00
45_S	48_L	0.725	1.00
153_H	167_S	0.724	1.00
155_S	167_S	0.724	1.00
205_G	211_L	0.720	1.00
217_L	228_E	0.712	1.00
141_L	163_F	0.703	1.00
164_T	206_L	0.703	1.00
110_Y	115_E	0.701	1.00
231_D	239_G	0.694	0.99
57_T	156_V	0.693	0.99
193_L	221_L	0.691	0.99
232_I	236_D	0.690	0.99
174_G	177_I	0.681	0.99
234_E	252_N	0.676	0.99
27_G	30_L	0.673	0.99
53_L	125_V	0.673	0.99
60_H	150_A	0.673	0.99
112_I	116_F	0.672	0.99
116_F	119_I	0.672	0.99
247_K	251_V	0.671	0.99
173_N	176_V	0.669	0.99
230_F	234_E	0.668	0.99
85_F	88_F	0.668	0.99
67_L	71_L	0.668	0.99
33_M	51_L	0.667	0.99
145_Y	154_I	0.663	0.99
222_D	225_L	0.663	0.99
104_K	107_G	0.663	0.99
225_L	228_E	0.659	0.99
33_M	70_I	0.656	0.99
54_V	79_V	0.655	0.99
172_F	176_V	0.655	0.99
71_L	76_N	0.655	0.99
238_G	241_G	0.654	0.99
204_V	212_V	0.653	0.99
62_D	208_H	0.651	0.99
230_F	233_G	0.651	0.99
162_L	196_Q	0.650	0.99
59_I	85_F	0.644	0.99
110_Y	114_G	0.640	0.99
172_F	175_A	0.640	0.99
57_T	60_H	0.639	0.99
87_K	91_T	0.639	0.99
23_Y	207_A	0.635	0.99
44_D	48_L	0.632	0.99
16_F	19_L	0.630	0.99
214_P	219_Q	0.625	0.99
179_T	182_P	0.625	0.99
55_I	141_L	0.622	0.99
235_I	239_G	0.621	0.99
113_Y	117_T	0.621	0.99
148_G	153_H	0.620	0.99
83_N	87_K	0.616	0.99
235_I	238_G	0.614	0.99
20_A	207_A	0.614	0.99
21_T	206_L	0.612	0.99
113_Y	119_I	0.609	0.99
131_E	143_I	0.605	0.99
39_T	69_E	0.605	0.99
219_Q	222_D	0.602	0.99
238_G	248_Q	0.602	0.99
148_G	188_N	0.597	0.98
144_I	155_S	0.596	0.98
112_I	115_E	0.595	0.98
31_N	50_K	0.593	0.98
109_L	113_Y	0.586	0.98
179_T	183_P	0.585	0.98
27_G	135_I	0.584	0.98
32_V	51_L	0.581	0.98
146_T	167_S	0.580	0.98
153_H	207_A	0.577	0.98
89_L	92_E	0.576	0.98
228_E	235_I	0.576	0.98
231_D	235_I	0.570	0.98
58_H	62_D	0.569	0.98
21_T	207_A	0.569	0.98
51_L	70_I	0.569	0.98
31_N	47_F	0.565	0.98
63_H	208_H	0.565	0.98
217_L	224_M	0.564	0.98
31_N	52_D	0.562	0.98
206_L	212_V	0.561	0.98
155_S	192_S	0.560	0.98
127_V	130_G	0.559	0.98
231_D	236_D	0.558	0.98
68_P	71_L	0.558	0.98
223_Q	226_G	0.556	0.98
236_D	239_G	0.556	0.98
41_S	69_E	0.554	0.98
59_I	152_H	0.554	0.98
149_H	166_D	0.553	0.98
51_L	77_A	0.553	0.98
194_R	221_L	0.553	0.98
234_E	239_G	0.551	0.97
230_F	235_I	0.548	0.97
248_Q	251_V	0.545	0.97
244_I	248_Q	0.544	0.97
169_G	174_G	0.541	0.97
127_V	131_E	0.537	0.97
176_V	179_T	0.534	0.97
109_L	112_I	0.531	0.97
38_V	64_I	0.528	0.97
28_D	136_G	0.527	0.97
20_A	148_G	0.525	0.97
88_F	91_T	0.525	0.97
224_M	234_E	0.525	0.97
106_L	113_Y	0.525	0.97
149_H	153_H	0.525	0.97
171_Y	210_G	0.524	0.97
227_K	235_I	0.521	0.96
85_F	89_L	0.521	0.96
86_K	89_L	0.521	0.96
35_D	166_D	0.518	0.96
110_Y	113_Y	0.517	0.96
238_G	243_E	0.516	0.96
26_C	48_L	0.516	0.96
59_I	64_I	0.512	0.96
114_G	117_T	0.512	0.96
241_G	251_V	0.511	0.96
111_Y	115_E	0.511	0.96
106_L	109_L	0.510	0.96
34_I	141_L	0.509	0.96
223_Q	231_D	0.508	0.96
81_I	86_K	0.507	0.96
39_T	65_G	0.507	0.96
127_V	156_V	0.506	0.96
111_Y	114_G	0.503	0.96
32_V	136_G	0.502	0.96
162_L	201_P	0.501	0.96
109_L	114_G	0.501	0.96
186_Y	190_V	0.500	0.96
54_V	71_L	0.500	0.96

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2zo4A	1	0.9513	100	0.351	Contact Map
2yheA	3	0.9663	100	0.377	Contact Map
2cfuA	2	0.9513	100	0.383	Contact Map
4pdxA	2	0.9513	100	0.392	Contact Map
4nurA	2	0.9588	100	0.394	Contact Map
4ad9A	4	0.8727	100	0.401	Contact Map
2vw8A	2	0.9551	100	0.411	Contact Map
3adrA	1	0.9625	100	0.426	Contact Map
2fhxA	2	0.8165	100	0.446	Contact Map
1k07A	1	0.8427	100	0.465	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0086 seconds.