Y2899 - SULSO - GREMLIN Contacts

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Y2899 - Uncharacterized protein SSO2899

UniProt:	Q97UU4	Sequences: MYKNPYGLEIYLIKGDITEIEADAIVNAANSYLQHGGGVAYAIVRKGGYIIQKESDEYVKKFGPVPVGEVAVTSAGKLKAKYVIHAVGPRYGIEGEDKLESAIFKSLLKADELSLSSIAMPAISTGIYGYPFEICARIMANVLKGYKPKTLRKVMICLYTKDAYDVFKSIFNSILKN	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	177 (159)
Sequences:	3926 (2837)
Seq/√Len:	225.0

ECOLI - YMDB
SULSO - Y2899

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
143_L	156_I	2.986	1.00
11_Y	153_K	2.964	1.00
54_E	76_G	2.581	1.00
96_E	134_I	2.480	1.00
20_I	155_M	2.442	1.00
116_S	152_R	2.368	1.00
54_E	74_S	2.336	1.00
160_T	163_A	2.227	1.00
72_V	109_K	2.130	1.00
47_G	51_I	2.112	1.00
101_S	105_K	2.062	1.00
69_E	105_K	2.022	1.00
164_Y	168_K	2.011	1.00
72_V	113_L	1.994	1.00
50_I	77_K	1.993	1.00
67_V	98_K	1.929	1.00
104_F	142_V	1.865	1.00
105_K	108_L	1.865	1.00
19_E	46_K	1.831	1.00
132_F	163_A	1.823	1.00
14_K	161_K	1.781	1.00
91_Y	95_G	1.764	1.00
14_K	164_Y	1.761	1.00
111_D	146_Y	1.703	1.00
35_H	40_A	1.678	1.00
82_Y	115_L	1.675	1.00
52_Q	56_D	1.662	1.00
142_V	145_G	1.629	1.00
132_F	166_V	1.616	1.00
130_Y	134_I	1.589	1.00
107_L	146_Y	1.562	1.00
130_Y	138_I	1.557	1.00
86_A	106_S	1.544	1.00
109_K	112_E	1.533	1.00
100_E	142_V	1.517	1.00
24_A	115_L	1.516	1.00
47_G	76_G	1.422	1.00
13_I	20_I	1.413	1.00
22_A	119_A	1.404	1.00
161_K	165_D	1.361	1.00
143_L	154_V	1.354	1.00
111_D	149_K	1.347	1.00
122_A	125_T	1.322	1.00
70_V	84_I	1.311	1.00
12_L	164_Y	1.310	1.00
122_A	167_F	1.302	1.00
62_F	71_A	1.294	1.00
158_L	164_Y	1.291	1.00
132_F	162_D	1.279	1.00
20_I	157_C	1.270	1.00
25_I	43_I	1.263	1.00
108_L	146_Y	1.259	1.00
50_I	76_G	1.252	1.00
86_A	102_A	1.233	1.00
75_A	80_A	1.233	1.00
66_P	71_A	1.231	1.00
166_V	170_I	1.229	1.00
100_E	141_N	1.223	1.00
96_E	130_Y	1.222	1.00
133_E	169_S	1.193	1.00
23_D	81_K	1.182	1.00
106_S	120_M	1.169	1.00
73_T	85_H	1.157	1.00
82_Y	113_L	1.154	1.00
122_A	163_A	1.153	1.00
111_D	151_L	1.149	1.00
158_L	167_F	1.146	1.00
23_D	115_L	1.142	1.00
65_V	71_A	1.140	1.00
51_I	76_G	1.136	1.00
136_A	166_V	1.111	1.00
109_K	113_L	1.106	1.00
110_A	118_I	1.100	1.00
125_T	163_A	1.087	1.00
103_I	139_M	1.086	1.00
88_G	124_S	1.078	1.00
84_I	106_S	1.073	1.00
70_V	105_K	1.053	1.00
72_V	115_L	1.050	1.00
12_L	171_F	1.043	1.00
165_D	169_S	1.033	1.00
40_A	44_V	1.031	1.00
141_N	145_G	1.030	1.00
24_A	84_I	1.028	1.00
100_E	104_F	1.026	1.00
163_A	167_F	1.024	1.00
108_L	112_E	1.022	1.00
122_A	132_F	1.009	1.00
15_G	157_C	1.007	1.00
137_R	170_I	1.004	1.00
132_F	160_T	0.987	1.00
66_P	69_E	0.984	1.00
50_I	74_S	0.978	1.00
15_G	20_I	0.978	1.00
100_E	145_G	0.977	1.00
34_Q	52_Q	0.972	1.00
34_Q	56_D	0.972	1.00
15_G	19_E	0.970	1.00
41_Y	45_R	0.967	1.00
122_A	136_A	0.965	1.00
91_Y	134_I	0.936	1.00
106_S	118_I	0.921	1.00
67_V	90_R	0.920	1.00
31_S	87_V	0.915	0.99
22_A	155_M	0.912	0.99
134_I	137_R	0.909	0.99
125_T	135_C	0.906	0.99
50_I	53_K	0.903	0.99
132_F	136_A	0.898	0.99
31_S	66_P	0.887	0.99
51_I	83_V	0.874	0.99
12_L	158_L	0.871	0.99
104_F	108_L	0.870	0.99
74_S	82_Y	0.863	0.99
100_E	138_I	0.862	0.99
94_E	97_D	0.859	0.99
111_D	150_T	0.858	0.99
70_V	109_K	0.857	0.99
97_D	101_S	0.856	0.99
69_E	101_S	0.854	0.99
21_E	79_K	0.854	0.99
140_A	171_F	0.854	0.99
42_A	46_K	0.849	0.99
91_Y	131_P	0.824	0.99
138_I	142_V	0.824	0.99
140_A	170_I	0.817	0.99
147_K	150_T	0.812	0.99
104_F	145_G	0.800	0.99
165_D	168_K	0.794	0.99
12_L	140_A	0.790	0.98
148_P	151_L	0.789	0.98
40_A	52_Q	0.789	0.98
31_S	67_V	0.787	0.98
133_E	166_V	0.787	0.98
125_T	136_A	0.786	0.98
91_Y	130_Y	0.783	0.98
16_D	19_E	0.776	0.98
163_A	166_V	0.771	0.98
111_D	152_R	0.763	0.98
28_A	39_V	0.755	0.98
78_L	83_V	0.754	0.98
95_G	98_K	0.752	0.98
136_A	170_I	0.749	0.98
96_E	138_I	0.747	0.98
94_E	98_K	0.743	0.98
117_S	153_K	0.739	0.98
136_A	167_F	0.737	0.98
54_E	73_T	0.736	0.98
110_A	115_L	0.731	0.98
96_E	100_E	0.727	0.97
103_I	135_C	0.727	0.97
36_G	41_Y	0.723	0.97
111_D	148_P	0.722	0.97
35_H	55_S	0.720	0.97
122_A	158_L	0.719	0.97
146_Y	149_K	0.716	0.97
14_K	160_T	0.706	0.97
151_L	154_V	0.704	0.97
125_T	167_F	0.698	0.97
49_Y	53_K	0.695	0.97
88_G	123_I	0.694	0.97
31_S	64_P	0.692	0.97
35_H	44_V	0.679	0.96
53_K	56_D	0.676	0.96
89_P	99_L	0.675	0.96
107_L	143_L	0.673	0.96
24_A	118_I	0.671	0.96
137_R	141_N	0.667	0.96
35_H	52_Q	0.666	0.96
167_F	170_I	0.664	0.96
25_I	79_K	0.662	0.96
119_A	157_C	0.657	0.95
114_S	150_T	0.656	0.95
51_I	74_S	0.656	0.95
25_I	78_L	0.654	0.95
161_K	164_Y	0.646	0.95
38_G	41_Y	0.646	0.95
29_A	36_G	0.643	0.95
139_M	156_I	0.639	0.95
92_G	95_G	0.638	0.95
11_Y	155_M	0.636	0.94
70_V	86_A	0.635	0.94
22_A	117_S	0.633	0.94
20_I	119_A	0.633	0.94
133_E	137_R	0.632	0.94
86_A	123_I	0.631	0.94
17_I	39_V	0.630	0.94
107_L	154_V	0.630	0.94
63_G	71_A	0.628	0.94
32_Y	64_P	0.622	0.94
44_V	55_S	0.621	0.94
111_D	147_K	0.615	0.93
122_A	166_V	0.611	0.93
81_K	117_S	0.610	0.93
120_M	139_M	0.603	0.93
124_S	128_Y	0.602	0.93
130_Y	135_C	0.601	0.93
135_C	139_M	0.596	0.92
125_T	132_F	0.595	0.92
115_L	118_I	0.595	0.92
149_K	152_R	0.593	0.92
142_V	146_Y	0.592	0.92
122_A	160_T	0.592	0.92
18_T	43_I	0.587	0.92
146_Y	154_V	0.585	0.92
122_A	156_I	0.584	0.92
27_N	43_I	0.582	0.91
156_I	167_F	0.576	0.91
27_N	85_H	0.575	0.91
13_I	155_M	0.574	0.91
12_L	168_K	0.570	0.91
108_L	111_D	0.564	0.90
146_Y	151_L	0.559	0.90
62_F	65_V	0.558	0.90
61_K	76_G	0.547	0.89
40_A	128_Y	0.546	0.89
68_G	86_A	0.542	0.88
52_Q	128_Y	0.541	0.88
29_A	55_S	0.539	0.88
33_L	71_A	0.538	0.88
122_A	170_I	0.537	0.88
44_V	52_Q	0.537	0.88
61_K	64_P	0.536	0.88
33_L	55_S	0.535	0.88
26_V	120_M	0.529	0.87
106_S	110_A	0.527	0.87
23_D	116_S	0.526	0.87
88_G	128_Y	0.522	0.86
29_A	38_G	0.519	0.86
29_A	128_Y	0.519	0.86
9_E	152_R	0.518	0.86
36_G	128_Y	0.515	0.86
44_V	51_I	0.511	0.85
136_A	158_L	0.506	0.85
109_K	115_L	0.505	0.85
87_V	102_A	0.504	0.84
47_G	74_S	0.501	0.84
162_D	165_D	0.500	0.84

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3q6zA	1	0.9887	100	0.148	Contact Map
4d86A	1	0.9887	100	0.16	Contact Map
1yd9A	1	1	100	0.168	Contact Map
2xd7A	1	0.9831	100	0.169	Contact Map
3q71A	1	0.9887	100	0.173	Contact Map
1vhuA	1	0.9887	100	0.174	Contact Map
4umlA	1	0.9718	100	0.178	Contact Map
1spvA	1	0.9435	100	0.185	Contact Map
2x47A	1	0.9774	100	0.185	Contact Map
4iqyA	1	0.9718	100	0.189	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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