Q97UU2 - SULSO - GREMLIN Contacts

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Q97UU2 - Uncharacterized protein

UniProt:	Q97UU2	Sequences: MQKSSCMRRVLIVAPHPDDETLCCGGTIQIFKEKGYKISVIIVTDGRYGSPDDKLKGSSELIEIRRQEALRATKILGIDEVKFLNFEDSKVSEEDAENALAEFLRENDVVFSPIPFDNHPDHANIGKAVEKLYPNAYFYLIWGNTQVNWREVKFDIRKYKESKLRAINQYISQIGGLPLERFTGDYEVFWTKG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	193 (165)
Sequences:	4468 (3120)
Seq/√Len:	242.9

ECOLI - YAIS
BACSU - YOJG YPJG
SULSO - Q97UU2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
43_V	125_I	2.918	1.00
86_F	99_A	2.850	1.00
9_R	37_K	2.742	1.00
26_G	156_I	2.740	1.00
33_E	162_S	2.660	1.00
71_R	74_K	2.635	1.00
33_E	159_Y	2.582	1.00
31_F	36_Y	2.405	1.00
30_I	34_K	2.388	1.00
12_I	28_I	2.308	1.00
39_S	82_K	2.295	1.00
124_N	127_K	2.271	1.00
30_I	159_Y	2.237	1.00
75_I	169_Q	2.212	1.00
13_V	129_V	2.170	1.00
10_V	31_F	2.144	1.00
45_D	66_R	2.076	1.00
29_Q	162_S	1.895	1.00
112_S	129_V	1.794	1.00
41_I	103_F	1.774	1.00
110_V	133_Y	1.770	1.00
67_Q	71_R	1.745	1.00
165_R	168_N	1.726	1.00
11_L	41_I	1.726	1.00
11_L	104_L	1.699	1.00
37_K	79_D	1.639	1.00
71_R	169_Q	1.635	1.00
9_R	108_D	1.625	1.00
42_I	69_A	1.621	1.00
31_F	111_F	1.605	1.00
75_I	165_R	1.561	1.00
97_E	131_K	1.556	1.00
82_K	103_F	1.544	1.00
28_I	32_K	1.540	1.00
96_A	128_A	1.508	1.00
32_K	38_I	1.507	1.00
21_T	72_A	1.504	1.00
66_R	70_L	1.469	1.00
13_V	41_I	1.448	1.00
9_R	39_S	1.437	1.00
12_I	20_E	1.426	1.00
99_A	102_E	1.426	1.00
164_L	168_N	1.422	1.00
12_I	111_F	1.408	1.00
39_S	80_E	1.386	1.00
66_R	85_N	1.380	1.00
15_P	113_P	1.380	1.00
101_A	135_N	1.362	1.00
28_I	38_I	1.348	1.00
75_I	162_S	1.330	1.00
24_C	111_F	1.306	1.00
123_A	127_K	1.303	1.00
101_A	105_R	1.294	1.00
45_D	85_N	1.291	1.00
29_Q	33_E	1.262	1.00
105_R	136_A	1.219	1.00
139_Y	143_G	1.214	1.00
33_E	158_K	1.202	1.00
139_Y	142_W	1.200	1.00
71_R	171_I	1.199	1.00
29_Q	76_L	1.197	1.00
110_V	129_V	1.194	1.00
137_Y	147_V	1.194	1.00
162_S	165_R	1.184	1.00
57_G	60_E	1.183	1.00
29_Q	166_A	1.166	1.00
30_I	158_K	1.157	1.00
32_K	79_D	1.142	1.00
84_L	99_A	1.139	1.00
95_D	99_A	1.136	1.00
30_I	154_F	1.120	1.00
66_R	83_F	1.115	1.00
27_T	31_F	1.103	1.00
26_G	163_K	1.083	1.00
67_Q	70_L	1.081	1.00
94_E	98_N	1.073	1.00
70_L	74_K	1.066	1.00
104_L	110_V	1.058	1.00
161_E	165_R	1.054	1.00
76_L	166_A	1.047	1.00
14_A	20_E	1.047	1.00
42_I	81_V	1.045	1.00
28_I	76_L	1.043	1.00
93_E	97_E	1.040	1.00
44_T	91_V	1.033	1.00
140_L	143_G	1.033	1.00
69_A	83_F	1.031	1.00
160_K	164_L	1.029	1.00
14_A	113_P	1.016	1.00
25_G	76_L	1.011	1.00
71_R	75_I	1.005	1.00
29_Q	159_Y	1.002	1.00
125_I	129_V	0.997	1.00
159_Y	162_S	0.991	1.00
155_D	159_Y	0.983	1.00
8_R	108_D	0.980	1.00
72_A	166_A	0.973	1.00
41_I	100_L	0.967	1.00
68_E	173_Q	0.965	1.00
60_E	63_E	0.961	1.00
124_N	128_A	0.941	1.00
100_L	128_A	0.939	1.00
17_P	46_G	0.926	1.00
97_E	135_N	0.924	1.00
48_Y	87_E	0.922	1.00
26_G	155_D	0.920	1.00
20_E	40_V	0.914	1.00
56_K	60_E	0.910	1.00
93_E	127_K	0.901	1.00
126_G	130_E	0.894	1.00
25_G	166_A	0.889	1.00
138_F	141_I	0.883	1.00
171_I	175_G	0.882	0.99
70_L	81_V	0.876	0.99
11_L	107_N	0.874	0.99
32_K	77_G	0.874	0.99
13_V	43_V	0.870	0.99
138_F	142_W	0.869	0.99
42_I	83_F	0.861	0.99
29_Q	32_K	0.856	0.99
40_V	73_T	0.856	0.99
114_I	117_D	0.855	0.99
73_T	81_V	0.855	0.99
36_Y	108_D	0.852	0.99
50_S	61_L	0.842	0.99
87_E	90_K	0.836	0.99
8_R	39_S	0.833	0.99
70_L	83_F	0.830	0.99
43_V	84_L	0.828	0.99
46_G	88_D	0.828	0.99
43_V	91_V	0.823	0.99
91_V	124_N	0.804	0.99
27_T	154_F	0.793	0.99
10_V	36_Y	0.789	0.99
13_V	100_L	0.786	0.99
138_F	143_G	0.786	0.99
10_V	111_F	0.786	0.99
73_T	78_I	0.784	0.99
97_E	132_L	0.778	0.99
28_I	40_V	0.775	0.99
49_G	88_D	0.773	0.99
10_V	109_V	0.766	0.99
113_P	117_D	0.759	0.98
156_I	159_Y	0.758	0.98
98_N	135_N	0.758	0.98
8_R	36_Y	0.750	0.98
93_E	96_A	0.750	0.98
39_S	79_D	0.748	0.98
69_A	170_Y	0.745	0.98
68_E	172_S	0.743	0.98
64_I	172_S	0.739	0.98
86_F	91_V	0.730	0.98
37_K	80_E	0.719	0.98
47_R	87_E	0.718	0.98
27_T	111_F	0.713	0.98
86_F	96_A	0.706	0.98
88_D	121_D	0.703	0.98
63_E	67_Q	0.699	0.97
131_K	134_P	0.698	0.97
48_Y	90_K	0.696	0.97
148_N	151_E	0.694	0.97
21_T	170_Y	0.693	0.97
112_S	126_G	0.691	0.97
40_V	78_I	0.689	0.97
36_Y	111_F	0.687	0.97
101_A	132_L	0.685	0.97
11_L	103_F	0.678	0.97
98_N	102_E	0.673	0.97
45_D	83_F	0.673	0.97
49_G	173_Q	0.670	0.97
156_I	160_K	0.670	0.97
97_E	101_A	0.666	0.97
101_A	136_A	0.658	0.96
41_I	84_L	0.656	0.96
21_T	69_A	0.652	0.96
18_D	119_H	0.651	0.96
72_A	169_Q	0.646	0.96
46_G	65_R	0.638	0.96
59_S	63_E	0.634	0.95
91_V	96_A	0.634	0.95
43_V	100_L	0.633	0.95
99_A	103_F	0.628	0.95
48_Y	89_S	0.625	0.95
47_R	62_I	0.623	0.95
39_S	103_F	0.621	0.95
26_G	159_Y	0.621	0.95
93_E	124_N	0.616	0.95
9_R	36_Y	0.612	0.95
13_V	125_I	0.608	0.94
14_A	117_D	0.606	0.94
51_P	56_K	0.605	0.94
49_G	89_S	0.601	0.94
132_L	136_A	0.596	0.94
94_E	135_N	0.593	0.94
45_D	62_I	0.591	0.93
69_A	73_T	0.589	0.93
115_P	126_G	0.589	0.93
94_E	131_K	0.580	0.93
84_L	103_F	0.579	0.93
18_D	122_H	0.579	0.93
14_A	24_C	0.579	0.93
112_S	130_E	0.576	0.93
95_D	98_N	0.575	0.92
93_E	131_K	0.574	0.92
161_E	164_L	0.572	0.92
94_E	97_E	0.569	0.92
19_D	122_H	0.563	0.92
22_L	147_V	0.562	0.92
143_G	147_V	0.560	0.92
120_P	124_N	0.560	0.92
52_D	56_K	0.560	0.92
51_P	57_G	0.557	0.91
65_R	88_D	0.556	0.91
65_R	173_Q	0.554	0.91
115_P	138_F	0.553	0.91
61_L	173_Q	0.551	0.91
45_D	87_E	0.543	0.90
28_I	78_I	0.542	0.90
21_T	25_G	0.542	0.90
52_D	57_G	0.540	0.90
127_K	131_K	0.536	0.90
24_C	27_T	0.533	0.89
91_V	125_I	0.532	0.89
115_P	127_K	0.532	0.89
113_P	123_A	0.530	0.89
28_I	73_T	0.528	0.89
155_D	158_K	0.527	0.89
104_L	132_L	0.526	0.89
14_A	112_S	0.525	0.89
75_I	166_A	0.525	0.89
17_P	170_Y	0.524	0.89
137_Y	141_I	0.523	0.89
46_G	89_S	0.523	0.89
15_P	43_V	0.521	0.88
35_G	38_I	0.520	0.88
142_W	147_V	0.520	0.88
156_I	163_K	0.517	0.88
104_L	133_Y	0.515	0.88
43_V	129_V	0.515	0.88
168_N	171_I	0.512	0.87
20_E	69_A	0.509	0.87
12_I	24_C	0.508	0.87
87_E	94_E	0.504	0.87
11_L	39_S	0.503	0.87
90_K	94_E	0.502	0.86
25_G	32_K	0.501	0.86
137_Y	140_L	0.501	0.86
60_E	64_I	0.500	0.86

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2ixdA	5	0.9171	100	0.278	Contact Map
4xlzA	5	0.9948	100	0.281	Contact Map
1uanA	5	0.8964	100	0.288	Contact Map
5bmoA	3	0.9845	100	0.29	Contact Map
3dffA	1	0.9585	100	0.296	Contact Map
3dfiA	1	0.9326	100	0.301	Contact Map
1q74A	1	0.9741	100	0.315	Contact Map
2r60A	1	0.8756	86.3	0.91	Contact Map
2x0dA	2	0.8394	79.4	0.917	Contact Map
3s28A	4	0.9482	76.2	0.919	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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