Q97UT9 - SULSO - GREMLIN Contacts

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Q97UT9 - Uncharacterized protein

UniProt:	Q97UT9	Sequences: MEIFKPDYLMIDSMIFFPTLILSFLIKRNYVKLLKSIGIVSPIYLFWDFLATWRNSWTFNPKYVAGIYVIDLPIEEVMFFLVTPFATLLIFDFVMGKVRDKEVKWVPKVVCVAIPLLLLTLPFVYNYSYTFIDLVYLIMSLIVSLLIGRNLLASRNFWIFMGLSYIPFLVFDYFLTSDPVVIYGSHSIVGIRFITIPIEDFIYSFSMITFYTVFYIRGNSLWMKQK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	226 (216)
Sequences:	123 (109)
Seq/√Len:	7.4

SULSO - Q97UT9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
58_T	182_I	4.511	0.98
214_F	218_G	4.423	0.98
9_L	12_D	3.725	0.95
185_S	188_I	3.278	0.90
133_D	204_S	3.129	0.88
28_R	97_K	2.907	0.83
12_D	82_V	2.679	0.78
42_P	77_V	2.610	0.76
137_L	205_F	2.547	0.74
91_F	205_F	2.542	0.74
121_L	169_L	2.365	0.68
82_V	90_I	2.360	0.68
25_L	28_R	2.297	0.65
193_F	201_F	2.294	0.65
22_L	25_L	2.231	0.63
18_P	83_T	2.218	0.63
157_F	216_I	2.197	0.62
70_I	118_L	2.179	0.61
77_V	137_L	2.158	0.60
90_I	204_S	2.131	0.59
143_V	198_I	2.068	0.57
157_F	167_P	1.996	0.54
137_L	202_I	1.929	0.52
41_S	46_F	1.905	0.51
138_I	198_I	1.844	0.48
25_L	97_K	1.792	0.46
130_T	189_V	1.733	0.44
15_I	171_F	1.722	0.43
40_V	210_F	1.696	0.42
94_V	163_L	1.630	0.40
15_I	83_T	1.623	0.40
22_L	97_K	1.617	0.39
153_A	205_F	1.585	0.38
89_L	172_D	1.560	0.37
18_P	90_I	1.542	0.37
78_M	121_L	1.525	0.36
178_D	194_I	1.520	0.36
117_L	137_L	1.501	0.35
61_P	68_Y	1.499	0.35
86_A	163_L	1.488	0.35
123_F	191_I	1.477	0.34
86_A	109_V	1.451	0.33
212_T	216_I	1.446	0.33
122_P	214_F	1.442	0.33
36_S	64_V	1.440	0.33
28_R	31_V	1.439	0.33
37_I	167_P	1.438	0.33
25_L	93_F	1.437	0.33
30_Y	78_M	1.407	0.32
166_I	207_M	1.392	0.31
70_I	74_I	1.387	0.31
33_L	37_I	1.386	0.31
85_F	112_V	1.378	0.31
25_L	96_G	1.371	0.31
175_L	181_V	1.363	0.30
45_L	49_F	1.356	0.30
18_P	30_Y	1.340	0.30
104_K	146_L	1.321	0.29
176_T	200_D	1.318	0.29
70_I	198_I	1.305	0.28
9_L	64_V	1.293	0.28
159_I	215_Y	1.290	0.28
70_I	208_I	1.288	0.28
18_P	22_L	1.281	0.28
9_L	27_K	1.262	0.27
83_T	92_D	1.260	0.27
70_I	86_A	1.252	0.27
124_V	189_V	1.239	0.26
169_L	220_S	1.229	0.26
144_S	213_V	1.208	0.25
48_D	57_W	1.203	0.25
104_K	108_K	1.202	0.25
7_D	11_I	1.189	0.25
22_L	28_R	1.189	0.25
121_L	138_I	1.183	0.25
30_Y	33_L	1.175	0.24
51_A	184_G	1.171	0.24
112_V	115_P	1.170	0.24
36_S	45_L	1.164	0.24
191_I	198_I	1.138	0.23
11_I	37_I	1.136	0.23
16_F	211_Y	1.136	0.23
57_W	80_F	1.132	0.23
53_W	71_D	1.132	0.23
48_D	80_F	1.130	0.23
25_L	29_N	1.122	0.23
17_F	127_Y	1.121	0.23
133_D	206_S	1.119	0.23
74_I	78_M	1.117	0.23
79_F	176_T	1.106	0.22
124_V	127_Y	1.098	0.22
176_T	192_R	1.096	0.22
115_P	119_L	1.085	0.22
46_F	128_S	1.081	0.22
65_A	206_S	1.069	0.21
165_Y	170_V	1.064	0.21
30_Y	90_I	1.060	0.21
117_L	121_L	1.059	0.21
13_S	17_F	1.058	0.21
119_L	145_L	1.058	0.21
87_T	172_D	1.056	0.21
91_F	145_L	1.056	0.21
154_S	209_T	1.053	0.21
181_V	200_D	1.052	0.21
86_A	123_F	1.051	0.21
99_R	180_V	1.049	0.21
38_G	67_I	1.047	0.21
94_V	134_L	1.044	0.21
7_D	13_S	1.039	0.21
90_I	164_S	1.039	0.21
20_L	41_S	1.038	0.21
128_S	180_V	1.037	0.21
112_V	202_I	1.030	0.20
152_L	204_S	1.018	0.20
174_F	193_F	1.000	0.20
21_I	150_N	0.982	0.19
39_I	180_V	0.981	0.19
81_L	106_V	0.978	0.19
7_D	33_L	0.976	0.19
57_W	176_T	0.973	0.19
116_L	180_V	0.964	0.19
48_D	183_Y	0.960	0.19
166_I	170_V	0.957	0.19
90_I	182_I	0.954	0.19
103_V	159_I	0.945	0.18
88_L	104_K	0.944	0.18
130_T	180_V	0.943	0.18
34_L	112_V	0.938	0.18
125_Y	131_F	0.934	0.18
48_D	176_T	0.931	0.18
34_L	126_N	0.927	0.18
7_D	17_F	0.927	0.18
90_I	160_F	0.926	0.18
66_G	75_E	0.923	0.18
83_T	90_I	0.915	0.18
35_K	157_F	0.912	0.18
39_I	191_I	0.907	0.17
28_R	75_E	0.905	0.17
20_L	50_L	0.894	0.17
42_P	69_V	0.887	0.17
164_S	204_S	0.885	0.17
107_P	110_V	0.885	0.17
141_L	185_S	0.883	0.17
79_F	200_D	0.876	0.17
74_I	194_I	0.876	0.17
67_I	118_L	0.875	0.17
114_I	142_I	0.875	0.17
47_W	57_W	0.866	0.17
80_F	176_T	0.864	0.17
22_L	157_F	0.862	0.16
172_D	200_D	0.861	0.16
64_V	207_M	0.859	0.16
59_F	197_P	0.854	0.16
192_R	200_D	0.849	0.16
45_L	133_D	0.849	0.16
67_I	146_L	0.849	0.16
81_L	139_M	0.843	0.16
78_M	169_L	0.837	0.16
22_L	160_F	0.826	0.16
182_I	196_I	0.823	0.16
57_W	175_L	0.822	0.16
22_L	90_I	0.820	0.16
26_I	38_G	0.815	0.15
12_D	94_V	0.812	0.15
15_I	87_T	0.812	0.15
18_P	82_V	0.809	0.15
87_T	184_G	0.802	0.15
89_L	184_G	0.799	0.15
75_E	201_F	0.796	0.15
19_T	113_A	0.793	0.15
89_L	173_Y	0.791	0.15
79_F	195_T	0.790	0.15
43_I	128_S	0.787	0.15
23_S	176_T	0.785	0.15
48_D	175_L	0.784	0.15
79_F	192_R	0.784	0.15
123_F	210_F	0.782	0.15
47_W	80_F	0.780	0.15
167_P	180_V	0.774	0.15
169_L	193_F	0.772	0.15
120_T	180_V	0.770	0.15
57_W	183_Y	0.765	0.14
57_W	200_D	0.764	0.14
35_K	40_V	0.761	0.14
84_P	203_Y	0.757	0.14
175_L	192_R	0.755	0.14
23_S	192_R	0.750	0.14
116_L	121_L	0.743	0.14
143_V	201_F	0.743	0.14
172_D	176_T	0.742	0.14
22_L	26_I	0.741	0.14
49_F	69_V	0.735	0.14
210_F	215_Y	0.725	0.14
65_A	75_E	0.724	0.14
43_I	215_Y	0.723	0.14
16_F	158_W	0.723	0.14
48_D	200_D	0.722	0.14
90_I	179_P	0.720	0.14
160_F	164_S	0.719	0.14
80_F	175_L	0.719	0.14
71_D	113_A	0.714	0.14
137_L	178_D	0.706	0.13
36_S	138_I	0.705	0.13
93_F	194_I	0.705	0.13
36_S	46_F	0.702	0.13
178_D	182_I	0.700	0.13
103_V	220_S	0.695	0.13
54_R	121_L	0.694	0.13
69_V	120_T	0.693	0.13
17_F	61_P	0.686	0.13
41_S	81_L	0.684	0.13
110_V	158_W	0.681	0.13
19_T	172_D	0.679	0.13
40_V	153_A	0.678	0.13
14_M	36_S	0.678	0.13
69_V	221_L	0.672	0.13
19_T	182_I	0.671	0.13
50_L	54_R	0.669	0.13
94_V	154_S	0.668	0.13
8_Y	11_I	0.667	0.13
15_I	18_P	0.664	0.13
94_V	133_D	0.662	0.13
185_S	205_F	0.661	0.13
181_V	192_R	0.661	0.13
8_Y	24_F	0.659	0.13
149_R	164_S	0.659	0.13
109_V	219_N	0.657	0.12
56_S	128_S	0.656	0.12
82_V	204_S	0.655	0.12
124_V	146_L	0.653	0.12
132_I	136_Y	0.653	0.12
98_V	159_I	0.653	0.12
80_F	200_D	0.653	0.12
27_K	138_I	0.652	0.12
56_S	136_Y	0.652	0.12
36_S	65_A	0.652	0.12
43_I	71_D	0.652	0.12
59_F	76_E	0.651	0.12
76_E	197_P	0.651	0.12
28_R	93_F	0.651	0.12
22_L	83_T	0.647	0.12
80_F	183_Y	0.646	0.12
71_D	118_L	0.644	0.12
24_F	30_Y	0.644	0.12
79_F	183_Y	0.643	0.12
85_F	215_Y	0.643	0.12
42_P	136_Y	0.640	0.12
29_N	32_K	0.640	0.12
105_W	110_V	0.633	0.12
157_F	212_T	0.622	0.12
44_Y	103_V	0.619	0.12
144_S	155_R	0.619	0.12
46_F	68_Y	0.618	0.12
78_M	163_L	0.617	0.12
11_I	77_V	0.612	0.12
5_K	170_V	0.611	0.12
21_I	38_G	0.608	0.12
21_I	34_L	0.606	0.12
98_V	218_G	0.601	0.12
28_R	83_T	0.598	0.12
112_V	138_I	0.596	0.11
89_L	200_D	0.594	0.11
43_I	143_V	0.592	0.11
102_E	154_S	0.592	0.11
189_V	219_N	0.585	0.11
170_V	218_G	0.584	0.11
47_W	176_T	0.584	0.11
136_Y	210_F	0.583	0.11
101_K	155_R	0.582	0.11
127_Y	193_F	0.579	0.11
11_I	178_D	0.579	0.11
41_S	117_L	0.574	0.11
45_L	121_L	0.572	0.11
109_V	123_F	0.570	0.11
121_L	131_F	0.569	0.11
14_M	115_P	0.569	0.11
119_L	122_P	0.566	0.11
49_F	186_H	0.566	0.11
34_L	53_W	0.564	0.11
41_S	217_R	0.562	0.11
112_V	219_N	0.561	0.11
62_K	121_L	0.561	0.11
33_L	131_F	0.559	0.11
10_M	38_G	0.559	0.11
16_F	82_V	0.558	0.11
88_L	211_Y	0.551	0.11
19_T	188_I	0.547	0.11
40_V	67_I	0.546	0.11
57_W	192_R	0.545	0.11
114_I	143_V	0.543	0.11
85_F	214_F	0.542	0.11
143_V	220_S	0.540	0.11
142_I	214_F	0.538	0.11
65_A	180_V	0.537	0.11
23_S	200_D	0.537	0.11
36_S	214_F	0.536	0.11
104_K	109_V	0.535	0.11
198_I	202_I	0.534	0.11
15_I	19_T	0.533	0.11
77_V	189_V	0.529	0.10
100_D	155_R	0.528	0.10
176_T	183_Y	0.527	0.10
187_S	207_M	0.525	0.10
22_L	92_D	0.525	0.10
12_D	26_I	0.523	0.10
18_P	204_S	0.523	0.10
179_P	209_T	0.523	0.10
85_F	202_I	0.521	0.10
125_Y	135_V	0.521	0.10
87_T	154_S	0.520	0.10
44_Y	158_W	0.517	0.10
158_W	206_S	0.516	0.10
169_L	201_F	0.515	0.10
79_F	85_F	0.515	0.10
51_A	175_L	0.513	0.10
133_D	152_L	0.511	0.10
64_V	85_F	0.511	0.10
87_T	173_Y	0.508	0.10
140_S	206_S	0.508	0.10
97_K	141_L	0.504	0.10
77_V	151_L	0.503	0.10
68_Y	217_R	0.502	0.10
67_I	74_I	0.500	0.10
51_A	172_D	0.500	0.10

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3dveB	1	0.1018	3.5	0.977	Contact Map
3bxlB	1	0.0752	3.4	0.977	Contact Map
2m20A	2	0.146	2.7	0.978	Contact Map
2f3yB	1	0.0796	2.6	0.978	Contact Map
3dvkB	1	0.1018	2.3	0.979	Contact Map
3v4yB	1	0.1018	2.3	0.979	Contact Map
3rceA	1	0.8053	2.2	0.979	Contact Map
2l2tA	2	0.1814	1.9	0.98	Contact Map
2w39A	1	0.2478	1.3	0.982	Contact Map
2jf1T	1	0	1.2	0.982	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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