Q97US4 - SULSO - GREMLIN Contacts

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Q97US4 - Uncharacterized protein

UniProt:	Q97US4	Sequences: MDNVTGGQYIVAKWGKTRDSKFLKIEIVMDNNEFNVVNAEVTSNEVESVKTVKDLQDKGKKVKKFYGDKAYDANEVYKTGVEVVVPPKKNASTKRHLARRKAVREFRKLGYDRWREEKGYGVRWRVESLFSAVKRTFGESVRQVLLELRLSSSSGLTRGWLTWRIL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	166 (160)
Sequences:	277 (171)
Seq/√Len:	13.5

SULSO - Q97US4 Q97UJ1 Q7LX34 Q97TV4 Q97VP0 Q97WA4 Q97Y57 Q97XJ2 Q97YB8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
87_P	91_A	3.112	0.98
52_V	76_V	2.780	0.95
5_T	8_Q	2.751	0.95
36_V	160_W	2.600	0.93
27_I	130_F	2.541	0.92
22_F	26_E	2.522	0.92
99_R	114_W	2.385	0.90
137_F	156_L	2.350	0.89
69_K	88_K	2.342	0.89
22_F	71_Y	2.309	0.88
94_K	97_L	2.178	0.85
41_V	141_V	2.164	0.84
6_G	10_I	2.145	0.84
72_D	114_W	2.093	0.82
26_E	48_S	2.082	0.82
12_A	17_T	2.060	0.81
129_L	132_A	2.037	0.80
41_V	153_S	2.011	0.80
38_N	81_V	2.004	0.79
3_N	21_K	1.995	0.79
34_F	129_L	1.944	0.77
86_P	149_R	1.910	0.76
19_D	23_L	1.882	0.75
28_V	32_N	1.810	0.72
4_V	21_K	1.798	0.71
152_S	161_L	1.701	0.67
148_L	155_G	1.673	0.65
156_L	159_G	1.614	0.62
21_K	44_N	1.566	0.60
34_F	132_A	1.544	0.59
2_D	5_T	1.541	0.59
2_D	8_Q	1.524	0.58
72_D	99_R	1.498	0.57
23_L	132_A	1.486	0.56
132_A	160_W	1.474	0.55
141_V	153_S	1.471	0.55
77_Y	86_P	1.471	0.55
83_V	102_A	1.468	0.55
64_K	146_L	1.453	0.54
121_G	124_W	1.450	0.54
65_F	83_V	1.444	0.54
48_S	161_L	1.414	0.52
118_K	121_G	1.388	0.51
41_V	150_L	1.388	0.51
90_N	112_D	1.372	0.50
146_L	150_L	1.370	0.50
51_T	54_D	1.328	0.48
30_D	70_A	1.317	0.47
91_A	103_V	1.307	0.46
56_Q	81_V	1.307	0.46
76_V	94_K	1.306	0.46
45_E	106_F	1.293	0.46
67_G	78_K	1.276	0.45
54_D	89_K	1.272	0.45
66_Y	84_V	1.253	0.44
9_Y	26_E	1.250	0.43
14_W	22_F	1.245	0.43
58_K	144_V	1.219	0.42
56_Q	119_G	1.205	0.41
3_N	15_G	1.195	0.41
38_N	56_Q	1.191	0.40
144_V	152_S	1.182	0.40
52_V	121_G	1.156	0.39
55_L	71_Y	1.156	0.39
30_D	84_V	1.135	0.38
133_V	141_V	1.133	0.37
29_M	125_R	1.130	0.37
132_A	141_V	1.091	0.35
129_L	143_Q	1.091	0.35
28_V	118_K	1.087	0.35
49_V	89_K	1.065	0.34
93_T	103_V	1.064	0.34
110_G	114_W	1.060	0.34
10_I	17_T	1.057	0.34
4_V	18_R	1.049	0.33
11_V	17_T	1.043	0.33
10_I	125_R	1.042	0.33
83_V	98_A	1.042	0.33
73_A	76_V	1.036	0.33
47_E	50_K	1.036	0.33
12_A	18_R	1.029	0.32
105_E	109_L	1.022	0.32
158_R	162_T	1.020	0.32
107_R	116_E	1.014	0.32
38_N	111_Y	1.014	0.32
43_S	46_V	1.011	0.32
44_N	74_N	1.011	0.32
7_G	88_K	1.007	0.31
22_F	161_L	1.003	0.31
128_S	131_S	0.997	0.31
125_R	129_L	0.992	0.31
145_L	148_L	0.985	0.30
91_A	100_R	0.975	0.30
3_N	10_I	0.974	0.30
69_K	72_D	0.971	0.30
81_V	125_R	0.963	0.29
113_R	121_G	0.963	0.29
113_R	117_E	0.951	0.29
150_L	159_G	0.951	0.29
94_K	121_G	0.949	0.29
8_Q	11_V	0.936	0.28
143_Q	151_S	0.934	0.28
133_V	157_T	0.927	0.28
113_R	137_F	0.924	0.28
148_L	158_R	0.923	0.28
26_E	161_L	0.917	0.27
22_F	48_S	0.914	0.27
34_F	106_F	0.883	0.26
47_E	124_W	0.875	0.26
14_W	24_K	0.869	0.25
104_R	107_R	0.858	0.25
115_R	133_V	0.857	0.25
10_I	66_Y	0.854	0.25
83_V	139_E	0.852	0.25
5_T	36_V	0.852	0.25
63_K	78_K	0.851	0.25
90_N	100_R	0.846	0.24
155_G	160_W	0.844	0.24
30_D	72_D	0.837	0.24
63_K	96_H	0.834	0.24
13_K	103_V	0.832	0.24
5_T	9_Y	0.832	0.24
80_G	105_E	0.826	0.24
51_T	65_F	0.826	0.24
48_S	67_G	0.817	0.23
38_N	62_V	0.812	0.23
87_P	141_V	0.801	0.23
53_K	65_F	0.797	0.23
38_N	140_S	0.787	0.22
32_N	133_V	0.784	0.22
24_K	48_S	0.781	0.22
42_T	143_Q	0.781	0.22
147_E	162_T	0.775	0.22
142_R	157_T	0.774	0.22
14_W	26_E	0.771	0.22
20_S	144_V	0.764	0.21
95_R	126_V	0.760	0.21
65_F	81_V	0.754	0.21
6_G	11_V	0.742	0.21
44_N	58_K	0.738	0.20
58_K	138_G	0.737	0.20
50_K	115_R	0.730	0.20
143_Q	146_L	0.725	0.20
49_V	82_E	0.722	0.20
148_L	157_T	0.720	0.20
94_K	130_F	0.720	0.20
89_K	92_S	0.715	0.20
30_D	88_K	0.711	0.20
68_D	123_R	0.703	0.19
25_I	87_P	0.701	0.19
115_R	121_G	0.698	0.19
146_L	151_S	0.697	0.19
9_Y	28_V	0.693	0.19
65_F	76_V	0.692	0.19
33_E	83_V	0.687	0.19
89_K	147_E	0.686	0.19
101_K	104_R	0.685	0.19
107_R	117_E	0.671	0.18
38_N	126_V	0.663	0.18
100_R	124_W	0.659	0.18
14_W	23_L	0.657	0.18
112_D	115_R	0.657	0.18
41_V	87_P	0.651	0.18
78_K	84_V	0.643	0.17
62_V	88_K	0.639	0.17
62_V	93_T	0.638	0.17
3_N	126_V	0.637	0.17
51_T	89_K	0.636	0.17
7_G	18_R	0.634	0.17
87_P	99_R	0.634	0.17
127_E	152_S	0.633	0.17
75_E	104_R	0.633	0.17
49_V	140_S	0.632	0.17
132_A	139_E	0.629	0.17
88_K	94_K	0.624	0.17
24_K	42_T	0.624	0.17
151_S	154_S	0.623	0.17
5_T	149_R	0.622	0.17
41_V	133_V	0.617	0.17
33_E	121_G	0.616	0.17
87_P	102_A	0.614	0.17
6_G	121_G	0.611	0.16
36_V	128_S	0.609	0.16
42_T	111_Y	0.606	0.16
144_V	149_R	0.603	0.16
67_G	118_K	0.601	0.16
61_K	81_V	0.600	0.16
6_G	122_V	0.599	0.16
61_K	97_L	0.598	0.16
50_K	102_A	0.598	0.16
137_F	142_R	0.590	0.16
79_T	110_G	0.590	0.16
134_K	143_Q	0.590	0.16
14_W	130_F	0.590	0.16
25_I	29_M	0.589	0.16
143_Q	159_G	0.585	0.16
154_S	162_T	0.584	0.16
9_Y	24_K	0.583	0.16
66_Y	126_V	0.583	0.16
105_E	108_K	0.583	0.16
44_N	104_R	0.582	0.16
104_R	110_G	0.579	0.16
29_M	34_F	0.577	0.15
82_E	96_H	0.575	0.15
15_G	23_L	0.574	0.15
63_K	67_G	0.571	0.15
4_V	11_V	0.571	0.15
51_T	103_V	0.571	0.15
5_T	14_W	0.570	0.15
47_E	90_N	0.568	0.15
10_I	115_R	0.562	0.15
75_E	140_S	0.560	0.15
31_N	70_A	0.559	0.15
46_V	133_V	0.550	0.15
26_E	42_T	0.550	0.15
149_R	161_L	0.548	0.15
107_R	162_T	0.546	0.15
30_D	114_W	0.546	0.15
49_V	155_G	0.540	0.14
52_V	77_Y	0.537	0.14
45_E	89_K	0.536	0.14
50_K	98_A	0.529	0.14
12_A	16_K	0.524	0.14
12_A	115_R	0.522	0.14
46_V	118_K	0.521	0.14
25_I	98_A	0.520	0.14
136_T	142_R	0.520	0.14
128_S	146_L	0.519	0.14
67_G	157_T	0.518	0.14
98_A	102_A	0.516	0.14
86_P	134_K	0.516	0.14
35_N	47_E	0.510	0.14
66_Y	97_L	0.509	0.14
47_E	56_Q	0.506	0.14
8_Q	132_A	0.505	0.14
67_G	71_Y	0.505	0.14
109_L	113_R	0.504	0.14
39_A	154_S	0.502	0.13
143_Q	155_G	0.501	0.13
73_A	145_L	0.500	0.13

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1musA	2	0.988	91	0.918	Contact Map
4fw1A	2	0.7771	20.2	0.954	Contact Map
3l3uA	2	0.7711	18.2	0.955	Contact Map
1c6vA	4	0.7349	13.4	0.957	Contact Map
4cf8A	2	0.7651	12.2	0.958	Contact Map
1cxqA	2	0.8012	10.9	0.959	Contact Map
1k6yA	4	0.6928	10.4	0.96	Contact Map
2x78A	2	0.7952	8.7	0.961	Contact Map
3f9kA	5	0.7289	7.8	0.962	Contact Map
4fw2A	2	0.7892	7.7	0.962	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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