Q97UR3 - SULSO - GREMLIN Contacts

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Q97UR3 - Maleate cis-trans isomerase, probable (MaiA)

UniProt:	Q97UR3	Sequences: MEWIKVGVIIPSSNTTVEYEFSNVFNQIKEYRITPHFSRIKLRNVTIEDLAEMERETERAASELSTILPQIISYACTTGSLFKGPKHHEEIIQRIEKIAKVPATATSGSVINALRRLDIKRLVLLTPYIEEVNKKEIEFFSKNGFEIVKSAGMGIRENIKIGQVTPEEVYNFAVNVLRNVKGDYDGVFISCTNLRTFEILSRLEKETKKPVISSNSATLWETLYKINLNIKVRELGHLFEIT	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	242 (230)
Sequences:	1271 (828)
Seq/√Len:	54.6

SULSO - Q97UR3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
174_V	206_E	6.313	1.00
112_N	221_E	5.318	1.00
119_I	186_G	4.449	1.00
212_I	217_A	4.098	1.00
120_K	185_D	3.910	1.00
173_A	189_I	3.432	1.00
73_S	222_T	3.359	1.00
119_I	185_D	3.307	1.00
201_S	205_K	3.105	1.00
73_S	218_T	3.033	1.00
71_I	222_T	2.793	1.00
177_L	209_K	2.679	1.00
170_Y	206_E	2.662	1.00
183_D	209_K	2.633	1.00
113_A	220_W	2.438	1.00
121_R	146_E	2.255	1.00
104_T	221_E	2.252	1.00
173_A	187_V	2.248	1.00
173_A	203_L	2.241	1.00
93_Q	97_K	2.164	1.00
155_I	164_V	2.144	1.00
170_Y	202_R	2.090	1.00
171_N	175_N	2.050	1.00
123_V	148_V	1.949	1.00
117_L	212_I	1.919	1.00
123_V	184_Y	1.847	0.99
58_E	94_R	1.837	0.99
201_S	234_E	1.835	0.99
148_V	184_Y	1.796	0.99
114_L	119_I	1.767	0.99
233_R	240_E	1.748	0.99
119_I	122_L	1.745	0.99
114_L	145_F	1.730	0.99
190_S	214_S	1.727	0.99
6_V	222_T	1.698	0.99
138_E	141_S	1.691	0.99
11_P	14_N	1.689	0.99
207_T	211_V	1.660	0.99
56_E	59_R	1.660	0.99
123_V	177_L	1.631	0.98
110_V	217_A	1.593	0.98
115_R	145_F	1.593	0.98
221_E	225_K	1.589	0.98
187_V	207_T	1.589	0.98
125_L	176_V	1.583	0.98
201_S	240_E	1.567	0.98
170_Y	203_L	1.565	0.98
202_R	205_K	1.532	0.98
62_S	98_I	1.523	0.98
111_I	143_N	1.516	0.98
124_L	150_S	1.492	0.97
104_T	225_K	1.491	0.97
110_V	140_F	1.478	0.97
200_L	213_S	1.452	0.97
182_G	209_K	1.451	0.97
24_V	197_F	1.423	0.96
166_P	198_E	1.418	0.96
8_V	75_A	1.417	0.96
165_T	168_E	1.410	0.96
169_V	194_L	1.390	0.96
9_I	40_I	1.384	0.96
50_L	53_M	1.381	0.96
141_S	146_E	1.339	0.95
134_K	138_E	1.333	0.95
203_L	206_E	1.328	0.95
96_E	99_A	1.284	0.94
15_T	193_N	1.283	0.94
130_E	134_K	1.274	0.93
50_L	76_C	1.267	0.93
71_I	226_I	1.267	0.93
72_I	95_I	1.255	0.93
81_L	107_S	1.246	0.93
221_E	224_Y	1.242	0.93
39_R	127_P	1.240	0.92
200_L	216_S	1.239	0.92
213_S	216_S	1.222	0.92
59_R	63_E	1.215	0.92
151_A	175_N	1.197	0.91
90_E	93_Q	1.189	0.91
110_V	188_F	1.182	0.91
133_N	150_S	1.158	0.90
127_P	191_C	1.147	0.89
24_V	232_V	1.139	0.89
122_L	140_F	1.123	0.88
14_N	158_N	1.122	0.88
24_V	235_L	1.108	0.87
181_K	209_K	1.099	0.87
113_A	238_L	1.096	0.87
24_V	219_L	1.094	0.87
169_V	196_T	1.093	0.87
76_C	128_Y	1.091	0.87
10_I	14_N	1.071	0.86
110_V	212_I	1.049	0.84
125_L	172_F	1.037	0.84
110_V	122_L	1.035	0.84
20_E	80_S	1.025	0.83
149_K	176_V	1.025	0.83
89_E	143_N	1.024	0.83
77_T	106_T	1.024	0.83
153_M	164_V	1.016	0.82
13_S	158_N	1.016	0.82
17_V	193_N	1.013	0.82
137_I	150_S	1.009	0.82
170_Y	199_I	1.007	0.82
79_G	191_C	1.004	0.82
76_C	191_C	1.004	0.82
177_L	181_K	0.994	0.81
11_P	158_N	0.982	0.80
153_M	172_F	0.981	0.80
181_K	184_Y	0.979	0.80
148_V	182_G	0.970	0.79
116_R	220_W	0.969	0.79
23_N	198_E	0.968	0.79
203_L	207_T	0.966	0.79
166_P	199_I	0.963	0.79
75_A	79_G	0.963	0.79
204_E	236_G	0.948	0.78
109_S	221_E	0.944	0.78
11_P	65_S	0.935	0.77
111_I	140_F	0.932	0.77
124_L	212_I	0.915	0.75
121_R	185_D	0.914	0.75
151_A	176_V	0.911	0.75
115_R	143_N	0.907	0.75
107_S	139_F	0.904	0.74
220_W	238_L	0.896	0.74
133_N	152_G	0.894	0.74
169_V	203_L	0.894	0.74
148_V	181_K	0.892	0.73
25_F	219_L	0.892	0.73
87_H	90_E	0.888	0.73
25_F	35_P	0.882	0.73
125_L	151_A	0.882	0.73
4_I	226_I	0.881	0.72
184_Y	209_K	0.876	0.72
189_I	211_V	0.873	0.72
220_W	224_Y	0.868	0.71
36_H	39_R	0.854	0.70
38_S	63_E	0.854	0.70
177_L	182_G	0.853	0.70
192_T	215_N	0.852	0.70
130_E	133_N	0.846	0.69
74_Y	191_C	0.846	0.69
17_V	75_A	0.833	0.68
17_V	194_L	0.833	0.68
33_I	228_L	0.831	0.68
113_A	117_L	0.825	0.67
38_S	60_A	0.817	0.67
199_I	203_L	0.816	0.67
12_S	158_N	0.815	0.66
7_G	90_E	0.814	0.66
142_K	229_N	0.814	0.66
114_L	212_I	0.813	0.66
11_P	106_T	0.809	0.66
20_E	215_N	0.805	0.66
168_E	171_N	0.804	0.65
14_N	106_T	0.802	0.65
177_L	184_Y	0.790	0.64
111_I	145_F	0.786	0.64
164_V	168_E	0.785	0.64
161_I	193_N	0.785	0.64
81_L	136_E	0.779	0.63
15_T	162_G	0.778	0.63
165_T	169_V	0.778	0.63
236_G	239_F	0.771	0.62
186_G	210_P	0.770	0.62
18_E	50_L	0.762	0.61
32_R	230_I	0.754	0.60
106_T	192_T	0.746	0.60
128_Y	191_C	0.741	0.59
7_G	64_L	0.740	0.59
76_C	190_S	0.739	0.59
130_E	154_G	0.738	0.59
33_I	223_L	0.732	0.58
113_A	204_E	0.725	0.57
81_L	140_F	0.725	0.57
54_E	91_I	0.723	0.57
106_T	188_F	0.721	0.57
4_I	32_R	0.715	0.56
53_M	190_S	0.713	0.56
16_T	194_L	0.711	0.56
14_N	18_E	0.710	0.56
106_T	136_E	0.705	0.55
80_S	190_S	0.703	0.55
224_Y	230_I	0.703	0.55
205_K	239_F	0.699	0.55
164_V	194_L	0.699	0.55
45_V	193_N	0.698	0.55
153_M	218_T	0.697	0.54
110_V	114_L	0.696	0.54
76_C	215_N	0.696	0.54
73_S	104_T	0.694	0.54
116_R	224_Y	0.693	0.54
65_S	97_K	0.692	0.54
121_R	148_V	0.687	0.53
53_M	78_T	0.686	0.53
165_T	195_R	0.684	0.53
122_L	182_G	0.683	0.53
53_M	161_I	0.682	0.53
72_I	101_V	0.681	0.53
132_V	169_V	0.680	0.53
166_P	195_R	0.675	0.52
134_K	137_I	0.672	0.52
4_I	33_I	0.671	0.52
8_V	25_F	0.669	0.51
126_T	191_C	0.668	0.51
14_N	192_T	0.667	0.51
10_I	15_T	0.667	0.51
107_S	136_E	0.664	0.51
88_H	106_T	0.664	0.51
11_P	188_F	0.662	0.51
98_I	103_A	0.661	0.51
61_A	72_I	0.660	0.51
111_I	114_L	0.657	0.50
14_N	42_L	0.655	0.50
130_E	152_G	0.652	0.50
181_K	187_V	0.650	0.49
174_V	203_L	0.650	0.49
71_I	102_P	0.650	0.49
18_E	22_S	0.650	0.49
80_S	136_E	0.649	0.49
113_A	116_R	0.649	0.49
107_S	169_V	0.649	0.49
111_I	115_R	0.648	0.49
9_I	49_D	0.648	0.49
106_T	153_M	0.647	0.49
6_V	226_I	0.646	0.49
11_P	88_H	0.645	0.49
200_L	204_E	0.645	0.49
65_S	101_V	0.642	0.49
199_I	202_R	0.641	0.48
72_I	93_Q	0.641	0.48
14_N	36_H	0.638	0.48
59_R	62_S	0.634	0.48
95_I	103_A	0.632	0.48
115_R	171_N	0.631	0.47
74_Y	190_S	0.630	0.47
53_M	74_Y	0.628	0.47
12_S	110_V	0.627	0.47
117_L	239_F	0.627	0.47
14_N	136_E	0.624	0.47
18_E	158_N	0.622	0.46
8_V	21_F	0.622	0.46
187_V	203_L	0.620	0.46
182_G	185_D	0.619	0.46
11_P	95_I	0.618	0.46
86_K	90_E	0.616	0.46
115_R	119_I	0.615	0.46
207_T	210_P	0.615	0.46
121_R	240_E	0.614	0.46
74_Y	188_F	0.612	0.45
77_T	191_C	0.611	0.45
77_T	192_T	0.610	0.45
157_E	160_K	0.609	0.45
48_E	202_R	0.609	0.45
185_D	210_P	0.604	0.45
74_Y	108_G	0.604	0.45
20_E	213_S	0.602	0.44
81_L	191_C	0.600	0.44
20_E	75_A	0.598	0.44
118_D	121_R	0.597	0.44
58_E	98_I	0.596	0.44
5_K	124_L	0.596	0.44
120_K	146_E	0.595	0.44
19_Y	22_S	0.593	0.43
14_N	78_T	0.592	0.43
209_K	224_Y	0.589	0.43
128_Y	192_T	0.588	0.43
224_Y	227_N	0.585	0.43
20_E	195_R	0.584	0.42
171_N	206_E	0.583	0.42
198_E	201_S	0.581	0.42
51_A	135_K	0.581	0.42
151_A	172_F	0.580	0.42
79_G	157_E	0.579	0.42
103_A	148_V	0.577	0.42
64_L	77_T	0.576	0.42
187_V	211_V	0.576	0.42
167_E	199_I	0.572	0.41
69_P	95_I	0.569	0.41
119_I	145_F	0.564	0.40
115_R	120_K	0.563	0.40
106_T	218_T	0.562	0.40
16_T	20_E	0.561	0.40
109_S	112_N	0.561	0.40
119_I	212_I	0.560	0.40
116_R	186_G	0.558	0.40
31_Y	34_T	0.557	0.40
232_V	235_L	0.556	0.40
46_T	53_M	0.555	0.39
13_S	17_V	0.555	0.39
77_T	215_N	0.554	0.39
153_M	168_E	0.553	0.39
187_V	209_K	0.552	0.39
125_L	173_A	0.552	0.39
148_V	183_D	0.551	0.39
204_E	238_L	0.551	0.39
108_G	112_N	0.551	0.39
167_E	171_N	0.550	0.39
182_G	231_K	0.548	0.39
58_E	72_I	0.546	0.38
171_N	231_K	0.545	0.38
9_I	61_A	0.542	0.38
137_I	151_A	0.542	0.38
61_A	145_F	0.539	0.38
47_I	51_A	0.538	0.38
96_E	100_K	0.537	0.38
65_S	69_P	0.536	0.37
112_N	116_R	0.534	0.37
14_N	216_S	0.531	0.37
116_R	200_L	0.530	0.37
25_F	187_V	0.530	0.37
113_A	216_S	0.529	0.37
21_F	25_F	0.529	0.37
171_N	183_D	0.529	0.37
124_L	147_I	0.528	0.37
8_V	73_S	0.527	0.37
104_T	108_G	0.527	0.37
15_T	36_H	0.527	0.37
235_L	239_F	0.526	0.36
167_E	202_R	0.525	0.36
211_V	216_S	0.525	0.36
62_S	174_V	0.525	0.36
117_L	145_F	0.525	0.36
79_G	192_T	0.523	0.36
175_N	202_R	0.523	0.36
114_L	122_L	0.522	0.36
141_S	150_S	0.520	0.36
71_I	225_K	0.519	0.36
93_Q	231_K	0.517	0.36
201_S	227_N	0.515	0.35
16_T	163_Q	0.514	0.35
13_S	42_L	0.514	0.35
170_Y	174_V	0.513	0.35
174_V	237_H	0.513	0.35
106_T	214_S	0.513	0.35
155_I	161_I	0.513	0.35
62_S	95_I	0.512	0.35
53_M	81_L	0.509	0.35
83_K	88_H	0.508	0.35
5_K	196_T	0.508	0.35
141_S	147_I	0.507	0.35
81_L	139_F	0.506	0.35
88_H	95_I	0.504	0.34
81_L	218_T	0.500	0.34

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4fq5B	4	0.9835	100	0.419	Contact Map
2xedA	1	0.9711	100	0.432	Contact Map
4ix1A	2	0.9339	100	0.435	Contact Map
3ixlA	1	0.9545	100	0.442	Contact Map
2dgdA	4	0.9091	100	0.506	Contact Map
2eq5A	2	0.8719	99.9	0.637	Contact Map
3qvlA	3	0.9174	99.9	0.653	Contact Map
3istA	2	0.9132	99.9	0.683	Contact Map
1b73A	2	0.8884	99.9	0.687	Contact Map
2vvtA	2	0.9132	99.9	0.702	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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