Q97UR2 - SULSO - GREMLIN Contacts

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Q97UR2 - Uncharacterized protein

UniProt:	Q97UR2	Sequences: MNWKILVNGVPIYTSLGFVGFCNIVLMDIDDKYLIYDPGHFGNREVLLKALKDSGLSPLDIDGVILSHMHYDHSLNSLLFPNAKVYTTREEVEYTKNTPDNYSVTYLPDLLRERIVLVKNNEQLDGLKFILLPGHTGGSLGVMYKDTIFVGDAIKYIIDAKNGETSFAYYDITEANKSIRKVLKLANKVVPGHDAPFTIVRDSNKIEIIPDSDLINKEFTVYTRSDEPKILIRRV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	235 (176)
Sequences:	12541 (9123)
Seq/√Len:	687.7

ECOLI - YCBL GLO2
BACSU - YQJP YTNP PKSB YYBB YOBT YFLN YQGX YRKH
HALSA - Q9HRG5 Q9HSH2 Q9HNJ9 Q9HQ42 Q9HSD1 Q9HNJ2 Q9HQ50
SULSO - Q97UR2 Q97Y13 Q97VU4 Q97YH8 Q97VU0 Q97XZ1 Q97YZ2 Q97U88 Q97UV2 Q7LYK3 Q97WC2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
132_L	141_G	4.829	1.00
32_K	62_D	4.231	1.00
66_L	77_S	3.489	1.00
63_G	86_Y	2.951	1.00
128_K	145_K	2.872	1.00
65_I	142_V	2.686	1.00
34_L	63_G	2.588	1.00
127_L	144_Y	2.520	1.00
28_D	33_Y	2.465	1.00
36_Y	67_S	2.410	1.00
129_F	140_L	2.365	1.00
171_D	174_E	2.332	1.00
63_G	84_K	2.169	1.00
129_F	142_V	2.152	1.00
88_T	140_L	2.001	1.00
147_T	190_V	1.924	1.00
183_L	205_K	1.919	1.00
25_V	190_V	1.909	1.00
33_Y	56_L	1.879	1.00
128_K	143_M	1.835	1.00
91_E	138_G	1.788	1.00
180_R	208_I	1.783	1.00
139_S	151_G	1.766	1.00
84_K	116_V	1.735	1.00
89_R	119_K	1.696	1.00
25_V	149_F	1.695	1.00
141_G	148_I	1.652	1.00
120_N	181_K	1.637	1.00
32_K	63_G	1.621	1.00
36_Y	149_F	1.599	1.00
143_M	148_I	1.558	1.00
122_E	128_K	1.537	1.00
50_A	53_D	1.528	1.00
92_V	96_K	1.513	1.00
183_L	208_I	1.507	1.00
130_I	143_M	1.496	1.00
86_Y	116_V	1.472	1.00
28_D	56_L	1.468	1.00
205_K	208_I	1.432	1.00
33_Y	61_I	1.426	1.00
50_A	54_S	1.417	1.00
115_I	118_V	1.405	1.00
34_L	65_I	1.398	1.00
134_G	178_S	1.374	1.00
181_K	184_K	1.372	1.00
204_N	208_I	1.357	1.00
87_T	91_E	1.347	1.00
164_E	169_Y	1.343	1.00
38_P	64_V	1.340	1.00
136_T	139_S	1.331	1.00
199_I	202_D	1.321	1.00
88_T	131_L	1.306	1.00
61_I	83_A	1.302	1.00
174_E	177_K	1.300	1.00
67_S	151_G	1.281	1.00
51_L	61_I	1.271	1.00
132_L	178_S	1.267	1.00
132_L	139_S	1.247	1.00
150_V	189_V	1.240	1.00
143_M	187_N	1.236	1.00
141_G	182_V	1.218	1.00
33_Y	62_D	1.209	1.00
177_K	180_R	1.197	1.00
48_L	52_K	1.196	1.00
49_K	52_K	1.179	1.00
77_S	85_V	1.178	1.00
49_K	53_D	1.171	1.00
45_E	49_K	1.158	1.00
36_Y	142_V	1.140	1.00
38_P	77_S	1.124	1.00
130_I	141_G	1.122	1.00
46_V	50_A	1.119	1.00
133_P	178_S	1.103	1.00
89_R	93_E	1.090	1.00
180_R	184_K	1.087	1.00
93_E	97_N	1.081	1.00
35_I	61_I	1.076	1.00
153_A	182_V	1.076	1.00
67_S	142_V	1.076	1.00
173_T	177_K	1.068	1.00
203_S	206_I	1.047	1.00
81_P	115_I	1.038	1.00
188_K	196_P	1.032	1.00
130_I	181_K	1.029	1.00
118_V	121_N	1.027	1.00
78_L	81_P	1.013	1.00
167_F	170_Y	1.006	1.00
90_E	93_E	0.993	1.00
32_K	57_S	0.993	1.00
29_I	32_K	0.988	1.00
91_E	136_T	0.977	1.00
203_S	207_E	0.972	1.00
110_L	113_E	0.972	1.00
27_M	36_Y	0.969	1.00
117_L	121_N	0.969	1.00
26_L	50_A	0.967	1.00
78_L	82_N	0.957	1.00
86_Y	118_V	0.943	1.00
118_V	140_L	0.938	1.00
23_N	194_D	0.929	1.00
143_M	185_L	0.928	1.00
141_G	153_A	0.916	1.00
166_S	169_Y	0.912	1.00
147_T	188_K	0.907	1.00
180_R	183_L	0.905	1.00
26_L	35_I	0.901	1.00
175_A	179_I	0.900	1.00
35_I	38_P	0.885	1.00
128_K	185_L	0.880	1.00
88_T	91_E	0.872	1.00
95_T	98_T	0.865	1.00
89_R	92_V	0.860	1.00
201_R	205_K	0.859	1.00
176_N	180_R	0.858	1.00
172_I	175_A	0.853	1.00
120_N	131_L	0.849	1.00
34_L	127_L	0.846	1.00
91_E	94_Y	0.844	1.00
114_R	118_V	0.843	1.00
92_V	117_L	0.841	1.00
35_I	47_L	0.837	1.00
188_K	198_T	0.835	1.00
69_M	91_E	0.817	1.00
36_Y	65_I	0.814	1.00
165_T	168_A	0.810	1.00
93_E	96_K	0.804	1.00
90_E	131_L	0.801	1.00
64_V	83_A	0.798	1.00
149_F	190_V	0.796	1.00
25_V	192_G	0.794	1.00
122_E	125_D	0.789	1.00
115_I	121_N	0.788	1.00
91_E	95_T	0.788	1.00
24_I	47_L	0.787	1.00
165_T	170_Y	0.782	1.00
164_E	170_Y	0.781	1.00
177_K	181_K	0.780	1.00
29_I	125_D	0.777	1.00
172_I	176_N	0.772	1.00
191_P	194_D	0.770	1.00
87_T	92_V	0.768	1.00
148_I	189_V	0.768	1.00
148_I	185_L	0.764	1.00
179_I	183_L	0.762	1.00
153_A	178_S	0.753	1.00
23_N	192_G	0.751	1.00
150_V	154_I	0.750	1.00
164_E	167_F	0.749	1.00
77_S	81_P	0.745	1.00
26_L	33_Y	0.741	1.00
47_L	50_A	0.733	1.00
52_K	57_S	0.733	1.00
64_V	85_V	0.733	1.00
153_A	175_A	0.731	1.00
164_E	168_A	0.728	1.00
114_R	117_L	0.724	1.00
64_V	77_S	0.724	1.00
71_Y	75_L	0.724	1.00
117_L	120_N	0.720	1.00
121_N	128_K	0.717	1.00
166_S	170_Y	0.714	1.00
167_F	172_I	0.713	1.00
65_I	127_L	0.713	1.00
24_I	39_G	0.713	1.00
92_V	95_T	0.711	1.00
95_T	99_P	0.709	1.00
46_V	49_K	0.708	1.00
181_K	185_L	0.707	1.00
62_D	84_K	0.700	1.00
64_V	80_F	0.698	1.00
40_H	44_R	0.698	1.00
51_L	56_L	0.698	1.00
38_P	76_N	0.696	1.00
76_N	79_L	0.695	1.00
116_V	119_K	0.694	1.00
202_D	206_I	0.694	1.00
94_Y	99_P	0.688	1.00
94_Y	97_N	0.687	1.00
27_M	144_Y	0.687	1.00
44_R	76_N	0.687	1.00
144_Y	147_T	0.685	1.00
33_Y	51_L	0.680	1.00
44_R	79_L	0.678	1.00
176_N	208_I	0.678	1.00
66_L	85_V	0.676	1.00
66_L	74_S	0.668	1.00
155_K	160_A	0.665	1.00
65_I	140_L	0.660	1.00
94_Y	137_G	0.660	1.00
69_M	74_S	0.659	1.00
40_H	43_N	0.657	1.00
23_N	204_N	0.655	1.00
68_H	152_D	0.654	1.00
89_R	117_L	0.653	1.00
189_V	197_F	0.649	1.00
81_P	85_V	0.648	1.00
132_L	153_A	0.648	1.00
87_T	95_T	0.645	1.00
24_I	38_P	0.644	1.00
83_A	87_T	0.643	1.00
88_T	92_V	0.636	1.00
119_K	131_L	0.631	1.00
183_L	201_R	0.630	1.00
28_D	54_S	0.628	1.00
165_T	169_Y	0.628	1.00
156_Y	195_A	0.627	1.00
130_I	185_L	0.621	1.00
35_I	51_L	0.613	1.00
141_G	178_S	0.612	1.00
191_P	197_F	0.606	1.00
78_L	110_L	0.603	1.00
139_S	153_A	0.602	1.00
69_M	136_T	0.601	1.00
45_E	48_L	0.600	1.00
127_L	142_V	0.600	1.00
41_F	44_R	0.600	1.00
34_L	125_D	0.594	1.00
189_V	200_V	0.592	1.00
79_L	82_N	0.589	1.00
84_K	115_I	0.587	1.00
186_A	189_V	0.585	1.00
186_A	201_R	0.583	1.00
131_L	181_K	0.582	1.00
39_G	66_L	0.581	1.00
38_P	66_L	0.579	1.00
169_Y	175_A	0.578	1.00
134_G	139_S	0.577	1.00
27_M	34_L	0.571	1.00
74_S	77_S	0.570	1.00
155_K	159_D	0.568	1.00
25_V	28_D	0.566	1.00
84_K	87_T	0.566	1.00
150_V	192_G	0.565	1.00
190_V	196_P	0.563	1.00
144_Y	149_F	0.563	1.00
34_L	62_D	0.562	1.00
48_L	79_L	0.561	1.00
63_G	66_L	0.560	1.00
131_L	140_L	0.560	1.00
100_D	109_D	0.558	1.00
28_D	50_A	0.558	1.00
133_P	174_E	0.554	1.00
47_L	76_N	0.546	1.00
178_S	181_K	0.544	1.00
174_E	178_S	0.541	1.00
157_I	200_V	0.536	1.00
37_D	68_H	0.535	1.00
137_G	174_E	0.534	1.00
81_P	114_R	0.532	1.00
83_A	88_T	0.531	1.00
26_L	61_I	0.531	1.00
148_I	187_N	0.527	1.00
64_V	81_P	0.523	1.00
150_V	191_P	0.522	1.00
94_Y	98_T	0.520	1.00
37_D	192_G	0.517	0.99
27_M	127_L	0.514	0.99
52_K	55_G	0.511	0.99
22_C	39_G	0.509	0.99
160_A	163_G	0.508	0.99
26_L	51_L	0.505	0.99
41_F	76_N	0.503	0.99
39_G	47_L	0.501	0.99
163_G	170_Y	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2zo4A	1	0.983	100	0.381	Contact Map
3aj3A	2	0.9149	100	0.423	Contact Map
3dhaA	1	0.8596	100	0.425	Contact Map
2r2dA	5	0.8851	100	0.426	Contact Map
2yheA	3	0.9872	100	0.429	Contact Map
2cfuA	2	0.9702	100	0.434	Contact Map
3eshA	5	0.9319	100	0.437	Contact Map
4pdxA	2	0.9702	100	0.438	Contact Map
4le6A	4	0.8255	100	0.439	Contact Map
4zo2A	2	0.9191	100	0.444	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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