Q97UM5 - SULSO - GREMLIN Contacts

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Q97UM5 - Uncharacterized protein

UniProt:	Q97UM5	Sequences: MNLTIIEFESNVLRDNPLNDPYKRRVGIIYPKDYEGRPILIYLSGYLSSSLTQINYNPLGEDMVSKVERLSNEGKMKGSVIVLPDMFTKVGGNQYINSSAVGMYEDFLVKELIPFLKDKFKSDKIGIFGHSSGGYGALILGMKYPNTIKAIADHAGDAYFEYVYLPTFPRAIEQLRRFKTPEEWLENYWKKENKQHREDLNTLNVVGMSAFYSPNNEKIELPFDLETGEILEDVWKKWLEKDPVRMVDKYADNLKMLKFIFIDVGKKDEFNIQYGSRTLHKKLQKYGINHYYEEFNDGHLHTNYRYDISLSLLEKKLTSE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	320 (304)
Sequences:	335 (271)
Seq/√Len:	15.5

SULSO - Q97UM5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
97_N	106_D	11.398	1.00
117_K	122_S	5.221	1.00
111_E	114_P	4.064	1.00
41_I	82_V	3.421	0.99
34_Y	41_I	3.108	0.99
30_Y	34_Y	3.097	0.98
213_S	238_W	3.070	0.98
39_I	117_K	2.929	0.98
9_E	15_D	2.868	0.97
67_V	71_S	2.642	0.96
110_K	144_Y	2.605	0.95
30_Y	80_V	2.583	0.95
34_Y	39_I	2.550	0.95
131_S	299_H	2.529	0.95
33_D	78_G	2.379	0.93
34_Y	80_V	2.280	0.91
9_E	21_P	2.204	0.89
15_D	21_P	2.144	0.88
7_E	25_R	2.118	0.87
115_F	119_K	2.096	0.87
105_E	143_K	2.084	0.86
97_N	103_M	2.052	0.86
157_D	160_F	2.052	0.86
137_A	153_D	2.011	0.84
117_K	125_I	1.946	0.82
96_I	212_Y	1.944	0.82
215_N	220_E	1.912	0.81
39_I	148_I	1.866	0.79
80_V	121_K	1.861	0.79
31_P	82_V	1.828	0.78
34_Y	125_I	1.826	0.78
157_D	242_D	1.825	0.78
222_P	235_W	1.819	0.78
8_F	112_L	1.813	0.77
118_D	229_E	1.810	0.77
10_S	111_E	1.781	0.76
74_G	118_D	1.765	0.75
302_T	305_R	1.732	0.74
24_R	112_L	1.720	0.73
141_G	151_I	1.705	0.73
68_E	71_S	1.697	0.72
34_Y	82_V	1.694	0.72
109_V	140_L	1.654	0.70
29_I	68_E	1.646	0.70
72_N	287_G	1.630	0.69
153_D	156_G	1.629	0.69
213_S	234_V	1.623	0.69
179_K	182_E	1.618	0.69
31_P	125_I	1.599	0.68
169_P	212_Y	1.588	0.67
132_S	157_D	1.587	0.67
109_V	148_I	1.582	0.67
246_M	250_Y	1.567	0.66
302_T	307_D	1.562	0.66
302_T	306_Y	1.555	0.65
12_V	111_E	1.551	0.65
238_W	299_H	1.542	0.65
282_K	286_Y	1.541	0.65
39_I	80_V	1.507	0.63
33_D	36_G	1.496	0.62
260_I	283_L	1.493	0.62
189_W	193_N	1.473	0.61
167_T	170_R	1.471	0.61
39_I	122_S	1.471	0.61
43_L	155_A	1.468	0.61
30_Y	121_K	1.451	0.60
45_G	155_A	1.435	0.59
130_H	156_G	1.424	0.58
244_V	248_D	1.409	0.58
112_L	116_L	1.389	0.56
120_F	196_H	1.385	0.56
88_T	136_G	1.383	0.56
34_Y	122_S	1.362	0.55
303_N	307_D	1.350	0.54
154_H	263_D	1.349	0.54
16_N	243_P	1.343	0.54
157_D	210_A	1.337	0.54
13_L	20_D	1.332	0.53
166_P	175_L	1.330	0.53
11_N	111_E	1.321	0.53
113_I	117_K	1.317	0.52
12_V	103_M	1.311	0.52
25_R	85_D	1.302	0.52
160_F	242_D	1.283	0.50
4_T	30_Y	1.282	0.50
168_F	235_W	1.253	0.49
103_M	106_D	1.248	0.48
19_N	68_E	1.245	0.48
277_R	294_E	1.242	0.48
39_I	149_K	1.237	0.48
94_Q	132_S	1.234	0.48
238_W	243_P	1.219	0.47
178_F	182_E	1.216	0.47
117_K	211_F	1.216	0.47
6_I	115_F	1.215	0.47
110_K	255_K	1.215	0.47
131_S	238_W	1.205	0.46
43_L	136_G	1.200	0.46
155_A	299_H	1.194	0.45
224_D	228_G	1.193	0.45
41_I	122_S	1.185	0.45
213_S	272_I	1.178	0.44
98_S	134_G	1.178	0.44
152_A	295_F	1.178	0.44
280_H	284_Q	1.166	0.44
45_G	131_S	1.157	0.43
259_F	312_L	1.151	0.43
41_I	148_I	1.150	0.43
41_I	149_K	1.149	0.43
155_A	301_H	1.143	0.42
92_G	136_G	1.143	0.42
292_Y	297_D	1.142	0.42
305_R	309_S	1.140	0.42
44_S	48_S	1.138	0.42
34_Y	117_K	1.135	0.42
186_E	190_K	1.133	0.42
132_S	242_D	1.119	0.41
98_S	102_G	1.115	0.41
104_Y	130_H	1.113	0.41
81_I	120_F	1.110	0.41
117_K	279_L	1.104	0.40
32_K	287_G	1.098	0.40
302_T	308_I	1.092	0.40
30_Y	39_I	1.079	0.39
70_L	76_M	1.075	0.39
125_I	148_I	1.075	0.39
151_I	237_K	1.073	0.39
16_N	24_R	1.073	0.39
5_I	25_R	1.067	0.38
93_N	101_V	1.061	0.38
209_S	221_L	1.060	0.38
138_L	153_D	1.058	0.38
160_F	169_P	1.057	0.38
33_D	77_K	1.055	0.38
30_Y	117_K	1.048	0.37
111_E	268_D	1.042	0.37
168_F	173_E	1.039	0.37
151_I	260_I	1.038	0.37
80_V	151_I	1.036	0.37
31_P	34_Y	1.032	0.36
35_E	303_N	1.031	0.36
161_E	168_F	1.031	0.36
9_E	23_K	1.023	0.36
266_K	296_N	1.020	0.36
185_L	188_Y	1.016	0.36
158_A	161_E	1.015	0.36
41_I	117_K	1.006	0.35
95_Y	106_D	1.004	0.35
214_P	283_L	1.003	0.35
283_L	288_I	0.999	0.35
43_L	95_Y	0.999	0.35
208_M	212_Y	0.991	0.34
118_D	284_Q	0.989	0.34
95_Y	136_G	0.988	0.34
233_D	284_Q	0.985	0.34
44_S	49_S	0.985	0.34
253_N	256_M	0.978	0.34
109_V	114_P	0.977	0.34
30_Y	190_K	0.975	0.33
184_W	188_Y	0.973	0.33
142_M	246_M	0.972	0.33
75_K	119_K	0.969	0.33
16_N	20_D	0.968	0.33
34_Y	121_K	0.967	0.33
126_G	216_N	0.966	0.33
262_I	280_H	0.965	0.33
98_S	299_H	0.963	0.33
19_N	125_I	0.959	0.33
13_L	131_S	0.949	0.32
156_G	309_S	0.947	0.32
131_S	134_G	0.946	0.32
16_N	172_I	0.946	0.32
120_F	194_K	0.942	0.32
40_L	128_F	0.942	0.32
24_R	293_E	0.941	0.32
254_L	262_I	0.939	0.32
210_A	272_I	0.931	0.31
169_P	208_M	0.929	0.31
94_Q	157_D	0.927	0.31
102_G	133_G	0.925	0.31
140_L	209_S	0.922	0.31
10_S	114_P	0.916	0.31
105_E	144_Y	0.911	0.30
45_G	130_H	0.911	0.30
210_A	268_D	0.905	0.30
29_I	104_Y	0.902	0.30
269_E	298_G	0.898	0.30
188_Y	270_F	0.895	0.30
229_E	233_D	0.894	0.29
190_K	193_N	0.893	0.29
45_G	299_H	0.892	0.29
187_N	190_K	0.883	0.29
131_S	155_A	0.879	0.29
152_A	156_G	0.878	0.29
54_I	63_M	0.878	0.29
114_P	149_K	0.877	0.29
170_R	284_Q	0.876	0.29
39_I	155_A	0.873	0.28
28_I	31_P	0.869	0.28
20_D	235_W	0.869	0.28
20_D	24_R	0.869	0.28
82_V	148_I	0.868	0.28
152_A	203_L	0.860	0.28
97_N	145_P	0.860	0.28
39_I	310_L	0.859	0.28
169_P	204_N	0.855	0.28
40_L	120_F	0.855	0.28
88_T	101_V	0.850	0.27
118_D	233_D	0.843	0.27
93_N	211_F	0.841	0.27
82_V	115_F	0.839	0.27
65_S	256_M	0.837	0.27
20_D	243_P	0.834	0.27
130_H	155_A	0.832	0.27
92_G	132_S	0.832	0.27
41_I	125_I	0.831	0.27
86_M	93_N	0.831	0.27
77_K	276_S	0.826	0.26
167_T	241_K	0.825	0.26
30_Y	257_L	0.824	0.26
303_N	309_S	0.818	0.26
302_T	309_S	0.815	0.26
10_S	33_D	0.813	0.26
50_S	264_V	0.812	0.26
236_K	239_L	0.812	0.26
178_F	181_P	0.807	0.26
192_E	196_H	0.804	0.25
118_D	281_K	0.802	0.25
93_N	117_K	0.800	0.25
120_F	245_R	0.799	0.25
11_N	284_Q	0.799	0.25
204_N	208_M	0.797	0.25
210_A	228_G	0.797	0.25
146_N	285_K	0.797	0.25
7_E	23_K	0.796	0.25
163_V	208_M	0.794	0.25
157_D	272_I	0.793	0.25
4_T	239_L	0.792	0.25
17_P	100_A	0.791	0.25
40_L	95_Y	0.790	0.25
39_I	82_V	0.789	0.25
158_A	300_L	0.784	0.25
95_Y	126_G	0.779	0.24
281_K	285_K	0.779	0.24
92_G	155_A	0.777	0.24
292_Y	296_N	0.777	0.24
294_E	297_D	0.774	0.24
99_S	260_I	0.773	0.24
146_N	256_M	0.773	0.24
296_N	301_H	0.766	0.24
29_I	90_V	0.764	0.24
136_G	295_F	0.763	0.24
235_W	242_D	0.762	0.24
210_A	242_D	0.761	0.24
188_Y	279_L	0.759	0.23
167_T	174_Q	0.758	0.23
47_L	302_T	0.752	0.23
283_L	292_Y	0.751	0.23
101_V	148_I	0.750	0.23
228_G	268_D	0.750	0.23
34_Y	149_K	0.746	0.23
157_D	224_D	0.743	0.23
93_N	148_I	0.742	0.23
49_S	52_T	0.741	0.23
191_K	194_K	0.741	0.23
220_E	231_L	0.740	0.23
238_W	242_D	0.740	0.23
94_Q	130_H	0.739	0.23
53_Q	64_V	0.736	0.23
30_Y	125_I	0.735	0.23
154_H	295_F	0.734	0.22
157_D	238_W	0.731	0.22
29_I	136_G	0.729	0.22
6_I	119_K	0.729	0.22
264_V	272_I	0.724	0.22
129_G	133_G	0.723	0.22
205_V	223_F	0.722	0.22
77_K	125_I	0.722	0.22
137_A	196_H	0.721	0.22
114_P	118_D	0.719	0.22
131_S	157_D	0.719	0.22
63_M	74_G	0.715	0.22
157_D	268_D	0.713	0.22
163_V	167_T	0.709	0.22
67_V	70_L	0.706	0.21
298_G	301_H	0.705	0.21
29_I	85_D	0.704	0.21
40_L	79_S	0.702	0.21
213_S	299_H	0.701	0.21
28_I	80_V	0.700	0.21
86_M	108_L	0.695	0.21
218_K	259_F	0.695	0.21
242_D	268_D	0.695	0.21
19_N	232_E	0.694	0.21
297_D	304_Y	0.690	0.21
144_Y	275_G	0.686	0.21
6_I	270_F	0.685	0.21
33_D	237_K	0.683	0.21
12_V	255_K	0.683	0.21
171_A	175_L	0.683	0.21
132_S	160_F	0.682	0.20
157_D	299_H	0.681	0.20
8_F	22_Y	0.680	0.20
109_V	144_Y	0.677	0.20
62_D	269_E	0.677	0.20
93_N	128_F	0.676	0.20
133_G	268_D	0.675	0.20
108_L	264_V	0.674	0.20
28_I	281_K	0.674	0.20
13_L	299_H	0.673	0.20
82_V	113_I	0.671	0.20
155_A	189_W	0.669	0.20
80_V	197_R	0.669	0.20
10_S	268_D	0.667	0.20
212_Y	242_D	0.667	0.20
239_L	245_R	0.667	0.20
160_F	212_Y	0.667	0.20
184_W	192_E	0.666	0.20
144_Y	255_K	0.663	0.20
81_I	198_E	0.660	0.20
35_E	248_D	0.658	0.20
42_Y	128_F	0.656	0.20
109_V	127_I	0.655	0.19
85_D	91_G	0.652	0.19
50_S	297_D	0.652	0.19
230_I	258_K	0.647	0.19
102_G	268_D	0.646	0.19
31_P	122_S	0.646	0.19
10_S	13_L	0.644	0.19
131_S	210_A	0.643	0.19
240_E	266_K	0.642	0.19
152_A	261_F	0.639	0.19
41_I	93_N	0.638	0.19
47_L	138_L	0.636	0.19
48_S	54_I	0.636	0.19
19_N	109_V	0.636	0.19
141_G	259_F	0.634	0.19
104_Y	298_G	0.634	0.19
157_D	227_T	0.633	0.19
146_N	254_L	0.633	0.19
91_G	95_Y	0.632	0.19
242_D	275_G	0.632	0.19
138_L	277_R	0.627	0.19
81_I	167_T	0.625	0.18
104_Y	210_A	0.622	0.18
127_I	137_A	0.620	0.18
50_S	85_D	0.619	0.18
6_I	279_L	0.618	0.18
85_D	215_N	0.617	0.18
263_D	295_F	0.616	0.18
307_D	310_L	0.610	0.18
264_V	292_Y	0.606	0.18
116_L	122_S	0.604	0.18
8_F	26_V	0.604	0.18
160_F	208_M	0.603	0.18
148_I	279_L	0.603	0.18
144_Y	147_T	0.602	0.18
125_I	211_F	0.602	0.18
122_S	279_L	0.600	0.18
94_Q	207_G	0.598	0.18
162_Y	165_L	0.597	0.17
145_P	223_F	0.596	0.17
42_Y	53_Q	0.592	0.17
40_L	73_E	0.591	0.17
32_K	120_F	0.590	0.17
93_N	132_S	0.590	0.17
184_W	187_N	0.589	0.17
69_R	74_G	0.589	0.17
80_V	247_V	0.589	0.17
161_E	164_Y	0.587	0.17
304_Y	309_S	0.586	0.17
129_G	134_G	0.583	0.17
6_I	23_K	0.583	0.17
164_Y	169_P	0.583	0.17
28_I	115_F	0.583	0.17
221_L	234_V	0.582	0.17
222_P	243_P	0.581	0.17
233_D	285_K	0.580	0.17
32_K	41_I	0.579	0.17
210_A	299_H	0.579	0.17
243_P	279_L	0.578	0.17
26_V	107_F	0.578	0.17
63_M	68_E	0.577	0.17
128_F	137_A	0.576	0.17
80_V	190_K	0.576	0.17
132_S	136_G	0.574	0.17
136_G	263_D	0.574	0.17
23_K	248_D	0.572	0.17
106_D	153_D	0.571	0.17
242_D	272_I	0.569	0.17
98_S	234_V	0.565	0.16
10_S	150_A	0.563	0.16
95_Y	134_G	0.560	0.16
135_Y	241_K	0.560	0.16
126_G	266_K	0.559	0.16
12_V	106_D	0.559	0.16
133_G	265_G	0.555	0.16
215_N	311_S	0.555	0.16
63_M	306_Y	0.553	0.16
160_F	270_F	0.553	0.16
284_Q	290_H	0.551	0.16
185_L	245_R	0.551	0.16
160_F	268_D	0.549	0.16
265_G	299_H	0.547	0.16
93_N	200_L	0.545	0.16
97_N	153_D	0.544	0.16
261_F	292_Y	0.544	0.16
96_I	242_D	0.541	0.16
222_P	294_E	0.541	0.16
102_G	265_G	0.540	0.16
103_M	107_F	0.540	0.16
196_H	199_D	0.540	0.16
24_R	85_D	0.538	0.16
40_L	148_I	0.538	0.16
21_P	242_D	0.535	0.16
308_I	311_S	0.532	0.15
95_Y	132_S	0.531	0.15
35_E	229_E	0.531	0.15
306_Y	309_S	0.530	0.15
303_N	308_I	0.528	0.15
134_G	299_H	0.528	0.15
257_L	260_I	0.524	0.15
157_D	270_F	0.523	0.15
228_G	264_V	0.522	0.15
11_N	15_D	0.519	0.15
42_Y	47_L	0.519	0.15
119_K	288_I	0.519	0.15
160_F	227_T	0.516	0.15
118_D	198_E	0.516	0.15
21_P	275_G	0.515	0.15
143_K	250_Y	0.515	0.15
69_R	73_E	0.515	0.15
192_E	205_V	0.514	0.15
247_V	286_Y	0.514	0.15
262_I	266_K	0.513	0.15
77_K	174_Q	0.511	0.15
98_S	136_G	0.511	0.15
121_K	236_K	0.511	0.15
164_Y	235_W	0.511	0.15
84_P	311_S	0.511	0.15
63_M	83_L	0.511	0.15
40_L	81_I	0.509	0.15
48_S	302_T	0.508	0.15
167_T	173_E	0.508	0.15
64_V	68_E	0.508	0.15
30_Y	115_F	0.508	0.15
71_S	228_G	0.507	0.15
71_S	76_M	0.507	0.15
230_I	308_I	0.504	0.15
265_G	272_I	0.504	0.15
131_S	213_S	0.504	0.15
33_D	125_I	0.503	0.15
42_Y	90_V	0.503	0.15
35_E	137_A	0.502	0.15
188_Y	191_K	0.501	0.15
193_N	197_R	0.500	0.15

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ls2A	2	0.7531	100	0.717	Contact Map
2uz0A	4	0.7438	100	0.723	Contact Map
4rotA	4	0.7531	100	0.724	Contact Map
4w9rA	2	0.6937	100	0.727	Contact Map
1jjfA	1	0.7031	100	0.731	Contact Map
4folA	2	0.7438	100	0.731	Contact Map
3c8dA	2	0.7063	100	0.733	Contact Map
3i6yA	1	0.75	100	0.734	Contact Map
3e4dA	3	0.7469	100	0.74	Contact Map
3gffA	2	0.7	99.9	0.742	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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