Q97UJ7 - SULSO - GREMLIN Contacts

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Q97UJ7 - Oxidoreductase

UniProt:	Q97UJ7	Sequences: MCSRFIHMKYVNLGESGVKVSQVAIGTWFLPRLQEKDELGIYKVDKETTLKILKRAYDEGVNFIDTANRYHGAMAPVDLPHVGNAERIVGEFLKTVDRESVVISTKVRGKMGDFVNGEGLSRKHILWQIKESLKRLGTSYIDVYFIHWPDPDTPKLETLRTLNSLVNNGLVYYLGVSNHSAVDVMEFLQLSERHNLEKFIVMQEKYNMLERDIEKDKAIIAKRFGLAIMAYSPLAQGFLTGKYVDKNGWKIEELSRASITEDLKKRYFTEANLRILLGLKDVASELGITLSQLAISWLLKRGEQLGITVIPLIGASKIEHLEDNLSALNINLRDDYMKRIEQIF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	344 (290)
Sequences:	24975 (15981)
Seq/√Len:	938.4

ECOLI - GPR YDJG TAS YAJO YDHF YEAE YDBC DKGA DKGB
BACSU - GS69 IOLS YRPG YCCK YCSN YQKF YTBE GR
HALSA - Q9HPH9 Q9HQU7 Q9HNN3 Q9HSE6 Q9HS02 Q9HQT1
SULSO - Q97UJ7 Q97UG6 Q97ZZ1 Q97UV9 Q97V56 Q97U17

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
55_R	322_E	3.575	1.00
46_K	91_E	3.504	1.00
130_K	170_L	3.092	1.00
94_K	137_G	2.974	1.00
286_L	336_Y	2.932	1.00
55_R	59_E	2.650	1.00
285_E	339_R	2.648	1.00
126_L	168_N	2.599	1.00
333_R	336_Y	2.553	1.00
129_I	165_L	2.536	1.00
12_N	19_K	2.439	1.00
105_T	141_I	2.245	1.00
163_N	167_N	2.203	1.00
145_F	201_V	2.158	1.00
11_V	22_Q	2.143	1.00
126_L	164_S	2.117	1.00
84_N	87_R	2.116	1.00
285_E	336_Y	2.066	1.00
280_K	284_S	2.065	1.00
140_Y	172_Y	2.035	1.00
24_A	63_F	1.983	1.00
45_D	48_T	1.975	1.00
334_D	338_K	1.969	1.00
97_D	100_S	1.953	1.00
59_E	322_E	1.920	1.00
164_S	167_N	1.916	1.00
107_V	125_I	1.877	1.00
145_F	229_M	1.857	1.00
56_A	61_V	1.851	1.00
122_R	164_S	1.842	1.00
300_K	337_M	1.820	1.00
59_E	325_L	1.804	1.00
27_T	64_I	1.797	1.00
103_I	138_T	1.780	1.00
50_L	92_F	1.768	1.00
129_I	141_I	1.763	1.00
288_I	330_I	1.761	1.00
129_I	144_Y	1.754	1.00
104_S	145_F	1.740	1.00
220_I	224_F	1.737	1.00
122_R	126_L	1.716	1.00
50_L	95_T	1.707	1.00
281_D	339_R	1.707	1.00
296_S	330_I	1.701	1.00
278_G	281_D	1.668	1.00
216_D	219_I	1.638	1.00
326_S	329_N	1.622	1.00
164_S	168_N	1.619	1.00
107_V	144_Y	1.600	1.00
289_T	323_D	1.592	1.00
163_N	197_E	1.583	1.00
53_L	92_F	1.574	1.00
10_Y	19_K	1.569	1.00
105_T	132_S	1.564	1.00
338_K	342_Q	1.562	1.00
185_M	189_Q	1.554	1.00
161_T	164_S	1.554	1.00
318_I	322_E	1.553	1.00
55_R	318_I	1.540	1.00
141_I	171_V	1.532	1.00
127_W	131_E	1.530	1.00
68_N	128_Q	1.513	1.00
87_R	135_R	1.506	1.00
222_K	302_G	1.502	1.00
48_T	51_K	1.500	1.00
50_L	91_E	1.499	1.00
171_V	174_L	1.496	1.00
288_I	292_Q	1.496	1.00
46_K	50_L	1.494	1.00
185_M	223_R	1.483	1.00
18_V	102_V	1.477	1.00
126_L	161_T	1.462	1.00
50_L	54_K	1.460	1.00
9_K	22_Q	1.460	1.00
126_L	130_K	1.457	1.00
64_I	89_V	1.436	1.00
221_A	228_I	1.431	1.00
57_Y	101_V	1.376	1.00
180_S	183_D	1.372	1.00
165_L	171_V	1.370	1.00
289_T	292_Q	1.362	1.00
301_R	341_E	1.358	1.00
131_E	135_R	1.354	1.00
149_P	183_D	1.322	1.00
98_R	138_T	1.321	1.00
131_E	134_K	1.317	1.00
319_E	322_E	1.301	1.00
87_R	134_K	1.299	1.00
288_I	293_L	1.295	1.00
146_I	162_L	1.294	1.00
208_M	340_I	1.293	1.00
339_R	342_Q	1.289	1.00
52_I	321_L	1.288	1.00
18_V	173_Y	1.283	1.00
282_V	293_L	1.280	1.00
12_N	17_G	1.280	1.00
185_M	220_I	1.272	1.00
62_N	102_V	1.263	1.00
173_Y	200_I	1.262	1.00
222_K	303_E	1.258	1.00
181_A	220_I	1.254	1.00
55_R	58_D	1.253	1.00
143_V	201_V	1.252	1.00
188_L	224_F	1.247	1.00
90_G	137_G	1.244	1.00
86_E	132_S	1.231	1.00
204_E	228_I	1.229	1.00
278_G	339_R	1.226	1.00
91_E	137_G	1.222	1.00
102_V	143_V	1.218	1.00
98_R	140_Y	1.216	1.00
54_K	58_D	1.215	1.00
122_R	160_R	1.212	1.00
298_L	311_P	1.211	1.00
68_N	124_H	1.208	1.00
162_L	174_L	1.208	1.00
281_D	285_E	1.203	1.00
188_L	220_I	1.197	1.00
130_K	168_N	1.188	1.00
205_K	210_E	1.181	1.00
122_R	157_E	1.167	1.00
322_E	326_S	1.161	1.00
227_A	310_I	1.152	1.00
51_K	318_I	1.137	1.00
315_A	321_L	1.135	1.00
21_S	61_V	1.135	1.00
292_Q	326_S	1.133	1.00
53_L	64_I	1.130	1.00
54_K	92_F	1.124	1.00
176_V	199_F	1.118	1.00
63_F	104_S	1.116	1.00
87_R	91_E	1.111	1.00
292_Q	323_D	1.107	1.00
47_E	51_K	1.107	1.00
27_T	89_V	1.096	1.00
280_K	290_L	1.094	1.00
277_L	280_K	1.091	1.00
54_K	95_T	1.090	1.00
160_R	164_S	1.086	1.00
93_L	101_V	1.083	1.00
321_L	325_L	1.081	1.00
296_S	300_K	1.079	1.00
315_A	320_H	1.078	1.00
9_K	331_N	1.075	1.00
174_L	199_F	1.061	1.00
123_K	127_W	1.060	1.00
277_L	281_D	1.056	1.00
156_L	186_E	1.055	1.00
208_M	294_A	1.054	1.00
22_Q	299_L	1.051	1.00
27_T	85_A	1.044	1.00
21_S	62_N	1.037	1.00
130_K	134_K	1.035	1.00
166_V	197_E	1.033	1.00
51_K	55_R	1.029	1.00
136_L	141_I	1.028	1.00
227_A	309_V	1.022	1.00
184_V	226_L	1.014	1.00
16_S	200_I	1.012	1.00
165_L	170_L	1.011	1.00
48_T	318_I	1.004	1.00
301_R	337_M	1.003	1.00
63_F	229_M	0.998	1.00
178_N	231_Y	0.995	1.00
165_L	168_N	0.994	1.00
219_I	223_R	0.994	1.00
270_E	274_R	0.994	1.00
293_L	330_I	0.994	1.00
211_R	214_E	0.994	1.00
218_A	228_I	0.992	1.00
156_L	190_L	0.990	1.00
126_L	129_I	0.989	1.00
279_L	290_L	0.987	1.00
201_V	229_M	0.985	1.00
282_V	286_L	0.978	1.00
281_D	284_S	0.977	1.00
142_D	172_Y	0.976	1.00
57_Y	97_D	0.969	1.00
22_Q	328_L	0.968	1.00
46_K	84_N	0.968	1.00
110_K	119_G	0.964	1.00
24_A	313_I	0.955	1.00
335_D	338_K	0.955	1.00
166_V	200_I	0.953	1.00
59_E	326_S	0.949	1.00
157_E	160_R	0.943	1.00
244_V	280_K	0.943	1.00
163_N	166_V	0.942	1.00
213_I	228_I	0.935	1.00
230_A	311_P	0.925	1.00
126_L	165_L	0.918	1.00
185_M	224_F	0.917	1.00
148_W	178_N	0.911	1.00
104_S	143_V	0.910	1.00
155_K	190_L	0.909	1.00
25_I	56_A	0.908	1.00
186_E	189_Q	0.902	1.00
133_L	170_L	0.895	1.00
161_T	165_L	0.892	1.00
52_I	318_I	0.891	1.00
124_H	127_W	0.885	1.00
299_L	327_A	0.883	1.00
158_T	161_T	0.876	1.00
53_L	57_Y	0.876	1.00
319_E	323_D	0.874	1.00
122_R	161_T	0.873	1.00
160_R	163_N	0.860	1.00
335_D	339_R	0.857	1.00
61_V	325_L	0.857	1.00
128_Q	131_E	0.850	1.00
159_L	174_L	0.849	1.00
233_P	313_I	0.843	1.00
25_I	30_L	0.841	1.00
206_Y	301_R	0.837	1.00
159_L	199_F	0.837	1.00
10_Y	62_N	0.834	1.00
176_V	184_V	0.828	1.00
300_K	334_D	0.826	1.00
274_R	277_L	0.822	1.00
99_E	140_Y	0.822	1.00
323_D	326_S	0.821	1.00
120_L	146_I	0.821	1.00
338_K	341_E	0.816	1.00
159_L	187_F	0.815	1.00
214_E	219_I	0.809	1.00
245_D	277_L	0.807	1.00
317_K	320_H	0.805	1.00
286_L	333_R	0.804	1.00
221_A	226_L	0.798	1.00
332_L	337_M	0.798	1.00
155_K	158_T	0.794	1.00
107_V	120_L	0.788	1.00
181_A	185_M	0.788	1.00
53_L	89_V	0.786	1.00
30_L	52_I	0.786	1.00
273_L	277_L	0.785	1.00
162_L	166_V	0.780	1.00
176_V	179_H	0.776	1.00
244_V	277_L	0.776	1.00
316_S	320_H	0.774	1.00
206_Y	211_R	0.768	1.00
23_V	299_L	0.766	1.00
215_K	219_I	0.766	1.00
20_V	63_F	0.764	1.00
66_T	89_V	0.761	1.00
274_R	278_G	0.757	1.00
51_K	54_K	0.754	1.00
286_L	293_L	0.753	1.00
176_V	202_M	0.750	1.00
186_E	190_L	0.746	1.00
30_L	49_T	0.746	1.00
68_N	135_R	0.745	1.00
282_V	339_R	0.744	1.00
238_F	276_L	0.744	1.00
125_I	165_L	0.743	1.00
166_V	171_V	0.738	1.00
119_G	124_H	0.735	1.00
273_L	276_L	0.734	1.00
13_L	227_A	0.734	1.00
54_K	97_D	0.733	1.00
129_I	161_T	0.730	1.00
16_S	173_Y	0.728	1.00
279_L	340_I	0.728	1.00
288_I	296_S	0.723	1.00
83_G	135_R	0.722	1.00
332_L	336_Y	0.720	1.00
47_E	50_L	0.719	1.00
209_L	238_F	0.717	1.00
213_I	218_A	0.712	1.00
266_R	270_E	0.709	1.00
283_A	293_L	0.708	1.00
293_L	340_I	0.707	1.00
125_I	158_T	0.707	1.00
86_E	105_T	0.707	1.00
112_G	117_G	0.705	1.00
24_A	310_I	0.702	1.00
57_Y	62_N	0.697	1.00
121_S	124_H	0.697	1.00
282_V	336_Y	0.694	1.00
202_M	221_A	0.691	1.00
46_K	88_I	0.691	1.00
84_N	88_I	0.690	1.00
97_D	101_V	0.688	1.00
276_L	280_K	0.688	1.00
127_W	130_K	0.688	1.00
66_T	85_A	0.687	1.00
10_Y	21_S	0.686	1.00
57_Y	100_S	0.685	1.00
291_S	323_D	0.684	1.00
188_L	226_L	0.683	1.00
24_A	312_L	0.683	1.00
285_E	333_R	0.681	1.00
300_K	331_N	0.680	1.00
286_L	330_I	0.679	1.00
211_R	341_E	0.678	1.00
15_E	225_G	0.678	1.00
9_K	329_N	0.677	1.00
296_S	327_A	0.675	1.00
86_E	135_R	0.675	1.00
186_E	223_R	0.674	1.00
31_P	85_A	0.673	1.00
284_S	287_G	0.673	1.00
64_I	93_L	0.670	1.00
206_Y	214_E	0.670	1.00
320_H	323_D	0.666	1.00
104_S	229_M	0.662	1.00
217_K	221_A	0.659	1.00
49_T	88_I	0.659	1.00
28_W	232_S	0.658	1.00
219_I	222_K	0.658	1.00
230_A	233_P	0.658	1.00
220_I	223_R	0.657	1.00
50_L	88_I	0.657	1.00
318_I	321_L	0.656	1.00
65_D	203_Q	0.656	1.00
218_A	222_K	0.653	1.00
188_L	198_K	0.650	1.00
149_P	178_N	0.650	1.00
279_L	294_A	0.647	1.00
92_F	95_T	0.645	1.00
241_G	244_V	0.644	1.00
288_I	326_S	0.642	1.00
91_E	95_T	0.641	1.00
163_N	174_L	0.641	1.00
57_Y	64_I	0.638	1.00
174_L	197_E	0.636	1.00
233_P	298_L	0.633	1.00
182_V	185_M	0.631	1.00
141_I	144_Y	0.628	1.00
53_L	93_L	0.622	1.00
126_L	170_L	0.621	1.00
145_F	175_G	0.617	1.00
149_P	179_H	0.616	1.00
213_I	216_D	0.615	1.00
264_K	267_Y	0.615	1.00
293_L	336_Y	0.614	1.00
299_L	311_P	0.613	1.00
120_L	158_T	0.612	1.00
150_D	153_T	0.610	1.00
245_D	270_E	0.609	1.00
144_Y	171_V	0.603	1.00
296_S	331_N	0.602	1.00
295_I	327_A	0.601	1.00
206_Y	298_L	0.601	1.00
63_F	102_V	0.600	1.00
185_M	188_L	0.598	1.00
181_A	216_D	0.597	1.00
143_V	175_G	0.595	1.00
166_V	174_L	0.595	1.00
293_L	332_L	0.594	1.00
233_P	295_I	0.593	1.00
179_H	184_V	0.592	1.00
52_I	315_A	0.590	1.00
124_H	128_Q	0.590	1.00
168_N	171_V	0.589	1.00
189_Q	224_F	0.585	1.00
175_G	201_V	0.584	1.00
265_K	268_F	0.584	1.00
244_V	247_N	0.584	1.00
44_V	49_T	0.583	1.00
238_F	272_N	0.582	1.00
125_I	161_T	0.579	1.00
68_N	131_E	0.579	1.00
93_L	97_D	0.577	1.00
98_R	142_D	0.577	1.00
240_T	243_Y	0.577	1.00
204_E	230_A	0.577	1.00
56_A	64_I	0.577	1.00
229_M	310_I	0.575	1.00
271_A	274_R	0.575	1.00
295_I	324_N	0.575	1.00
25_I	52_I	0.574	1.00
106_K	147_H	0.571	1.00
146_I	158_T	0.571	1.00
71_H	84_N	0.571	1.00
292_Q	330_I	0.570	1.00
282_V	285_E	0.568	1.00
67_A	147_H	0.568	1.00
129_I	133_L	0.567	1.00
86_E	147_H	0.566	1.00
57_Y	92_F	0.566	1.00
23_V	328_L	0.566	1.00
105_T	147_H	0.563	1.00
176_V	187_F	0.563	1.00
130_K	165_L	0.563	1.00
13_L	16_S	0.562	1.00
315_A	324_N	0.560	1.00
48_T	319_E	0.559	1.00
213_I	219_I	0.556	1.00
96_V	101_V	0.554	1.00
132_S	144_Y	0.552	1.00
59_E	321_L	0.551	1.00
107_V	128_Q	0.547	1.00
187_F	199_F	0.546	1.00
294_A	298_L	0.546	1.00
261_E	264_K	0.545	1.00
129_I	170_L	0.544	1.00
133_L	139_S	0.543	1.00
109_G	148_W	0.540	1.00
69_R	109_G	0.537	1.00
151_P	183_D	0.537	1.00
93_L	103_I	0.536	1.00
133_L	138_T	0.534	1.00
52_I	316_S	0.532	1.00
44_V	316_S	0.532	1.00
295_I	313_I	0.532	1.00
21_S	63_F	0.531	1.00
245_D	273_L	0.530	1.00
199_F	226_L	0.529	1.00
62_N	100_S	0.528	1.00
326_S	330_I	0.526	1.00
206_Y	218_A	0.525	1.00
336_Y	339_R	0.524	1.00
264_K	268_F	0.522	1.00
213_I	217_K	0.521	1.00
220_I	226_L	0.520	1.00
166_V	198_K	0.519	1.00
245_D	274_R	0.518	1.00
104_S	201_V	0.518	1.00
20_V	102_V	0.518	1.00
55_R	325_L	0.517	1.00
288_I	329_N	0.517	1.00
183_D	186_E	0.516	1.00
153_T	158_T	0.513	1.00
182_V	223_R	0.511	1.00
56_A	321_L	0.511	1.00
167_N	170_L	0.509	1.00
262_D	265_K	0.509	1.00
87_R	137_G	0.508	1.00
204_E	217_K	0.505	1.00
24_A	229_M	0.504	1.00
271_A	275_I	0.503	1.00
242_K	320_H	0.501	1.00
105_T	144_Y	0.501	1.00
184_V	217_K	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
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HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1pyfA	1	0.8953	100	0.156	Contact Map
4xk2A	5	0.8488	100	0.157	Contact Map
1pz1A	1	0.8953	100	0.163	Contact Map
3erpA	6	0.8634	100	0.169	Contact Map
3n2tA	1	0.8953	100	0.169	Contact Map
3v0sA	1	0.782	100	0.173	Contact Map
1lqaA	2	0.9186	100	0.181	Contact Map
3n6qA	5	0.8663	100	0.183	Contact Map
3eauA	3	0.9012	100	0.186	Contact Map
3lutA	3	0.8983	100	0.191	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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