Q97UJ1 - SULSO - GREMLIN Contacts

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Q97UJ1 - Second ORF in transposase ISC1058

UniProt:	Q97UJ1	Sequences: MRNMKITFPEASDELEVIADATGISTNTGGQYIVAKWGKTRDSKFLKIEIVMDNNEFNVVNAEVTSNEVESAVKTVKDLQDKGKKVKKFYGDKTYDANEVYKTGVEVVVPPKKNASTKRGHLARRKAVREFRKLGYDRWREEKGYGVRWRVESLFSAVKRTFGESVRATSFAGQVVEAKLKFWAYAWMVHLANSVVGRAPGIRV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	204 (189)
Sequences:	297 (173)
Seq/√Len:	12.6

SULSO - Q97UJ1 Q7LX34 Q97TV4 Q97VP0 Q97WA4 Q97US4 Q97Y57 Q97XJ2 Q97YB8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
59_V	185_Y	3.035	0.96
189_V	193_N	3.007	0.96
75_T	100_V	2.999	0.96
121_H	125_R	2.924	0.96
20_D	23_G	2.844	0.95
50_I	155_F	2.659	0.93
154_L	157_A	2.461	0.89
26_T	44_K	2.408	0.88
156_S	160_R	2.334	0.87
45_F	95_Y	2.308	0.86
124_R	139_W	2.268	0.85
64_V	178_A	2.228	0.84
96_D	124_R	2.223	0.84
162_F	181_K	2.143	0.81
28_T	31_Q	2.130	0.81
16_E	29_G	2.100	0.80
111_P	115_A	2.078	0.79
110_P	174_Q	2.031	0.78
93_K	112_K	2.025	0.77
57_F	154_L	1.975	0.76
189_V	192_A	1.953	0.75
24_I	178_A	1.928	0.74
57_F	157_A	1.923	0.74
96_D	139_W	1.879	0.72
178_A	189_V	1.839	0.70
29_G	33_I	1.821	0.69
44_K	67_N	1.793	0.68
64_V	166_V	1.787	0.68
45_F	49_E	1.714	0.64
64_V	175_V	1.694	0.63
97_A	100_V	1.669	0.62
49_E	71_S	1.656	0.62
18_I	54_N	1.611	0.59
71_S	186_A	1.589	0.58
17_V	51_V	1.585	0.58
184_A	188_M	1.572	0.57
74_K	77_K	1.570	0.57
39_K	43_S	1.530	0.55
27_N	44_K	1.516	0.55
46_L	157_A	1.513	0.54
36_K	102_K	1.481	0.53
158_V	166_V	1.478	0.53
28_T	37_W	1.476	0.53
22_T	151_V	1.469	0.52
61_N	105_V	1.462	0.52
33_I	150_R	1.432	0.50
25_S	96_D	1.432	0.50
21_A	78_D	1.429	0.50
52_M	151_V	1.419	0.50
107_V	127_A	1.408	0.49
24_I	157_A	1.399	0.49
17_V	60_V	1.387	0.48
80_Q	85_K	1.376	0.47
35_A	40_T	1.353	0.46
19_A	44_K	1.331	0.45
49_E	65_T	1.328	0.45
53_D	112_K	1.319	0.44
24_I	64_V	1.306	0.44
118_K	146_G	1.297	0.43
133_K	170_S	1.278	0.42
177_E	186_A	1.271	0.42
146_G	149_W	1.261	0.42
170_S	173_G	1.248	0.41
24_I	166_V	1.247	0.41
53_D	94_T	1.243	0.41
10_E	14_E	1.240	0.41
190_H	193_N	1.238	0.40
175_V	184_A	1.229	0.40
118_K	122_L	1.229	0.40
25_S	31_Q	1.225	0.40
107_V	123_A	1.222	0.40
183_W	187_W	1.193	0.38
171_F	175_V	1.184	0.38
37_W	45_F	1.181	0.38
18_I	90_Y	1.145	0.36
22_T	94_T	1.133	0.35
89_F	107_V	1.130	0.35
151_V	197_G	1.115	0.35
100_V	118_K	1.114	0.34
70_E	73_V	1.101	0.34
52_M	150_R	1.101	0.34
12_S	128_V	1.100	0.34
117_T	128_V	1.094	0.34
143_K	146_G	1.088	0.33
130_E	134_L	1.082	0.33
150_R	154_L	1.080	0.33
88_K	171_F	1.072	0.33
140_R	158_V	1.068	0.32
92_D	148_R	1.064	0.32
43_S	139_W	1.038	0.31
28_T	96_D	1.037	0.31
19_A	79_L	1.035	0.31
189_V	194_S	1.032	0.31
68_E	131_F	1.025	0.30
111_P	131_F	1.022	0.30
94_T	155_F	1.018	0.30
43_S	194_S	0.994	0.29
166_V	178_A	0.994	0.29
45_F	186_A	0.980	0.29
41_R	134_L	0.978	0.28
157_A	185_Y	0.976	0.28
67_N	129_R	0.976	0.28
42_D	151_V	0.971	0.28
47_K	71_S	0.969	0.28
172_A	195_V	0.967	0.28
71_S	78_D	0.961	0.28
174_Q	186_A	0.959	0.28
117_T	120_G	0.958	0.28
36_K	128_V	0.953	0.27
119_R	172_A	0.950	0.27
54_N	94_T	0.946	0.27
181_K	184_A	0.944	0.27
129_R	135_G	0.942	0.27
141_E	160_R	0.940	0.27
29_G	146_G	0.934	0.27
32_Y	49_E	0.934	0.27
70_E	149_W	0.929	0.26
27_N	41_R	0.917	0.26
95_Y	110_P	0.915	0.26
34_V	40_T	0.908	0.26
124_R	135_G	0.903	0.25
26_T	42_D	0.896	0.25
134_L	138_R	0.892	0.25
33_I	90_Y	0.890	0.25
141_E	161_T	0.881	0.25
147_V	194_S	0.879	0.24
126_K	142_E	0.878	0.24
14_E	65_T	0.871	0.24
79_L	168_A	0.864	0.24
61_N	86_V	0.854	0.24
35_A	41_R	0.850	0.23
50_I	94_T	0.849	0.23
45_F	91_G	0.848	0.23
137_D	143_K	0.843	0.23
111_P	127_A	0.841	0.23
42_D	46_L	0.840	0.23
51_V	55_N	0.834	0.23
111_P	124_R	0.834	0.23
81_D	163_G	0.833	0.23
77_K	129_R	0.828	0.23
65_T	84_K	0.828	0.23
141_E	195_V	0.824	0.22
72_A	165_S	0.820	0.22
173_G	180_L	0.814	0.22
30_G	112_K	0.810	0.22
61_N	165_S	0.807	0.22
53_D	169_T	0.807	0.22
169_T	194_S	0.801	0.22
28_T	42_D	0.799	0.22
77_K	113_K	0.798	0.22
19_A	75_T	0.797	0.21
110_P	166_V	0.797	0.21
185_Y	188_M	0.792	0.21
89_F	100_V	0.788	0.21
60_V	178_A	0.787	0.21
113_K	172_A	0.787	0.21
72_A	106_E	0.785	0.21
164_E	182_F	0.779	0.21
90_Y	108_V	0.778	0.21
99_E	129_R	0.774	0.21
46_L	125_R	0.773	0.21
79_L	133_K	0.767	0.20
16_E	28_T	0.767	0.20
132_R	142_E	0.764	0.20
30_G	86_V	0.761	0.20
64_V	158_V	0.755	0.20
96_D	148_R	0.755	0.20
59_V	105_V	0.753	0.20
65_T	171_F	0.753	0.20
21_A	32_Y	0.749	0.20
25_S	37_W	0.744	0.20
170_S	176_V	0.744	0.20
153_S	194_S	0.740	0.20
65_T	116_S	0.740	0.20
135_G	139_W	0.739	0.20
28_T	174_Q	0.728	0.19
66_S	69_V	0.723	0.19
18_I	156_S	0.717	0.19
53_D	96_D	0.716	0.19
31_Q	192_A	0.713	0.19
50_I	140_R	0.711	0.19
58_N	70_E	0.710	0.19
39_K	165_S	0.709	0.19
140_R	146_G	0.706	0.19
27_N	50_I	0.705	0.18
137_D	140_R	0.703	0.18
45_F	71_S	0.703	0.18
66_S	168_A	0.698	0.18
48_I	111_P	0.697	0.18
12_S	168_A	0.696	0.18
47_K	131_F	0.696	0.18
113_K	164_E	0.695	0.18
163_G	187_W	0.695	0.18
101_Y	110_P	0.694	0.18
64_V	130_E	0.690	0.18
115_A	128_V	0.689	0.18
21_A	71_S	0.682	0.18
16_E	54_N	0.678	0.18
49_E	186_A	0.672	0.17
61_N	136_Y	0.669	0.17
25_S	155_F	0.668	0.17
79_L	144_G	0.666	0.17
90_Y	190_H	0.661	0.17
96_D	135_G	0.655	0.17
22_T	30_G	0.652	0.17
113_K	116_S	0.651	0.17
49_E	78_D	0.650	0.17
37_W	146_G	0.649	0.17
65_T	71_S	0.647	0.17
48_I	91_G	0.640	0.17
180_L	185_Y	0.639	0.17
178_A	192_A	0.636	0.16
17_V	31_Q	0.635	0.16
96_D	112_K	0.630	0.16
53_D	139_W	0.624	0.16
179_K	189_V	0.618	0.16
164_E	181_K	0.618	0.16
82_K	85_K	0.616	0.16
50_I	93_K	0.613	0.16
93_K	96_D	0.607	0.16
51_V	169_T	0.607	0.16
44_K	162_F	0.606	0.16
115_A	125_R	0.598	0.15
188_M	196_V	0.598	0.15
157_A	166_V	0.598	0.15
26_T	38_G	0.593	0.15
31_Q	34_V	0.590	0.15
81_D	169_T	0.586	0.15
43_S	54_N	0.584	0.15
33_I	140_R	0.582	0.15
72_A	135_G	0.582	0.15
113_K	192_A	0.581	0.15
73_V	140_R	0.581	0.15
185_Y	190_H	0.579	0.15
110_P	186_A	0.579	0.15
32_Y	93_K	0.574	0.15
169_T	174_Q	0.573	0.15
101_Y	182_F	0.572	0.15
30_G	115_A	0.572	0.15
10_E	109_V	0.570	0.15
126_K	129_R	0.569	0.15
29_G	147_V	0.569	0.15
32_Y	125_R	0.566	0.15
100_V	158_V	0.566	0.15
16_E	155_F	0.563	0.14
67_N	98_N	0.563	0.14
55_N	89_F	0.563	0.14
59_V	134_L	0.563	0.14
26_T	161_T	0.563	0.14
47_K	92_D	0.557	0.14
70_E	81_D	0.555	0.14
43_S	169_T	0.550	0.14
37_W	100_V	0.549	0.14
94_T	107_V	0.548	0.14
11_A	164_E	0.547	0.14
81_D	109_V	0.546	0.14
145_Y	152_E	0.544	0.14
26_T	48_I	0.544	0.14
74_K	113_K	0.542	0.14
22_T	155_F	0.537	0.14
60_V	133_K	0.536	0.14
26_T	184_A	0.535	0.14
168_A	176_V	0.534	0.14
97_A	134_L	0.533	0.14
101_Y	111_P	0.531	0.14
106_E	143_K	0.531	0.14
45_F	65_T	0.530	0.14
111_P	157_A	0.528	0.14
22_T	48_I	0.526	0.14
61_N	79_L	0.526	0.14
40_T	113_K	0.526	0.14
154_L	193_N	0.521	0.13
18_I	35_A	0.521	0.13
108_V	180_L	0.520	0.13
62_A	158_V	0.514	0.13
173_G	193_N	0.512	0.13
11_A	184_A	0.510	0.13
24_I	27_N	0.506	0.13
154_L	168_A	0.506	0.13
18_I	26_T	0.505	0.13
94_T	169_T	0.505	0.13
178_A	190_H	0.503	0.13
118_K	155_F	0.501	0.13
108_V	190_H	0.500	0.13

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1musA	2	0.9461	97.2	0.9	Contact Map
4fw1A	2	0.7451	59.2	0.948	Contact Map
1bcoA	1	0.8333	27.8	0.957	Contact Map
4fw2A	2	0.7108	19	0.961	Contact Map
1c6vA	4	0.652	17.6	0.961	Contact Map
3l3uA	2	0.6863	17	0.961	Contact Map
3f9kA	5	0.75	15	0.963	Contact Map
1k6yA	4	0.6618	14.4	0.963	Contact Map
1cxqA	2	0.6569	13.9	0.963	Contact Map
4cf8A	2	0.6863	11.3	0.964	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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