Q97UH3 - SULSO - GREMLIN Contacts

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Q97UH3 - ABC transporter, ATP binding protein

UniProt:	Q97UH3	Sequences: MSEISISVKNLNVGYLSDYGIIKVLRNVSIDIPESKIIGVAGESGSGKSTLATTIMGFVNPPLYVERGSIIVDSKYDILSMSRDELNKIRGSVISYVPQAAQNSLNPIRKVKETFTDILKAKGMDYYANIDVVYNTLEEVGLTDRQVLDMYPFQLSGGMKQRVVIAISLLLNPKILIMDEPTTGLDVVVQYEILKLLKKIQKEKDLTLVVISHDIAMLFQISDYIAVMYGGQIVEYGKYNTLLEEAYHPYTYLLLSSVPTVRSRGKKLPRIPGDFEGFIRYPKGCVFSSRCPFVTSTCKEVPPQIVAYDKFGFYKCIRYPEWRNEVKKAYE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	331 (271)
Sequences:	49097 (30874)
Seq/√Len:	1875.5

ECOLI - DDPD PROV FBPC POTG DPPD OPPD CYSA YCJV POTA METN UGPC MALK DPPF YDCT OPPF SAPD YEHX MODC YADG YHES DDPF GSIA RBSA ARAG UUP MACB SAPF FEPC HISP MLAF MDLA TAUB MDLB YTFR NIKE FECE CYDC MSBA FHUC PHNK CYDD PHNC YECC LSRA LIVG YOJI ETTA ALSA YPHE GLNQ YHDZ LOLD SSUB LPTB GLTL SUFC LIVF MODF XYLG ZNUC FTSE THIQ MGLA ARTP PSTB BTUD YEJF NIKD YBBA FETA YBHF PHNL YDDA CCMA YNJD YBIT YHIH
BACSU - DPPD OPUCA OPUBA OPPD OPUAA APPD YVRA MSMX YURJ METN YKFD APPF OPPF YKPA YFMM YVFR YDBJ TAGH YHCH YFIL YXLF YCBN YHAQ YUSV YDIF ECFA1 RBSA YFMR YHEH SUFC YFMF SUNT YFIC YTRB FHUC BMRA YKNU YKNV YFIB YCLP TCYN YWJA YHEI YGAD YLMA YXDL BCEA YTLC YKOD ECFA2 CYDC CYDD YVCR NATA YXEO ECSA GLNQ TCYC ARTM SKFE FTSE YJKB YVRO PSTB1 YTHP YKNY MNTB SSUB ALBC PSTB2 YUFO EXPZ YCLH ZNUC YHCG YYBJ YTRE YYDI
HALSA - Q9HMX3 Q9HMW0 Q9HMX2 BTUDA Q9HHQ5 Q9HNZ9 Q9HR06 Q9HMT3 Q9HRJ6 Q9HMG1 Q9HMU8 Q9HSQ7 PSTB2 Q9HRH8 Q9HMG6 Q9HNY3 PHNC Q9HHM2 Q9HRZ9 Q9HRV7 Y2317 Y1631 Q9HR96 PSTB1 Q9HHR7 Q9HQA8 Q9HT03 Q9HR21 Q9HS04 Q9HMC1 Q9HMW1
SULSO - Q97UH3 Q97UF2 Q97YP3 Q97YY4 Q97UY8 Q97VF5 Q97ZC0 Q97YP7 Q97VK8 Q97YP8 Q97VC1 Q7LX64 Q97VF4 Q97VH6 Q97VK9 Q97UJ9 Q97YK2 Q97X18 Q97UD4 Q97YQ7 Q97U54 Q97Z03 Y1893 Y2030 Q97UH4 Q980W0 Q7LY07 PSTB Q97W42 Q97V01 Q7LXM4 Q97V00 Q97VY4 Q97UG5 Q97VM2 Q7LX80 Q97Z56 Q97YP4 Q97UC2 Q97Z96 Q97ZU0 Q980K5 Q980E6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
36_K	224_Y	4.159	1.00
93_V	174_K	3.517	1.00
10_N	27_N	3.391	1.00
7_S	31_D	3.252	1.00
9_K	69_S	3.188	1.00
13_V	54_T	2.933	1.00
23_K	26_R	2.899	1.00
38_I	226_A	2.824	1.00
69_S	77_D	2.586	1.00
238_K	241_T	2.551	1.00
73_D	174_K	2.475	1.00
39_G	222_S	2.458	1.00
224_Y	236_Y	2.399	1.00
33_P	36_K	2.382	1.00
147_V	150_M	2.379	1.00
226_A	233_I	2.344	1.00
14_G	23_K	2.337	1.00
26_R	232_Q	2.330	1.00
7_S	71_I	2.315	1.00
219_F	240_N	2.248	1.00
8_V	11_L	2.194	1.00
12_N	67_R	2.186	1.00
77_D	80_S	2.163	1.00
12_N	27_N	2.136	1.00
34_E	174_K	2.088	1.00
132_V	135_N	2.074	1.00
52_A	211_I	2.040	1.00
125_D	128_A	2.020	1.00
136_T	170_L	2.006	1.00
82_S	85_E	1.984	1.00
132_V	172_N	1.980	1.00
237_G	242_L	1.942	1.00
15_Y	50_T	1.938	1.00
9_K	71_I	1.889	1.00
57_G	86_L	1.812	1.00
39_G	218_L	1.797	1.00
212_S	218_L	1.791	1.00
52_A	177_I	1.745	1.00
134_Y	148_L	1.726	1.00
75_K	85_E	1.720	1.00
12_N	23_K	1.720	1.00
109_R	113_E	1.706	1.00
15_Y	24_V	1.676	1.00
150_M	154_Q	1.644	1.00
13_V	59_V	1.617	1.00
14_G	66_E	1.599	1.00
135_N	139_E	1.585	1.00
116_T	133_V	1.574	1.00
198_K	201_Q	1.570	1.00
226_A	236_Y	1.565	1.00
116_T	129_N	1.563	1.00
10_N	29_S	1.551	1.00
14_G	21_I	1.536	1.00
241_T	245_E	1.532	1.00
13_V	66_E	1.532	1.00
112_K	149_D	1.529	1.00
200_I	206_L	1.525	1.00
73_D	93_V	1.520	1.00
16_L	21_I	1.520	1.00
198_K	220_Q	1.508	1.00
120_K	129_N	1.505	1.00
11_L	61_P	1.504	1.00
8_V	30_I	1.504	1.00
147_V	155_L	1.500	1.00
285_C	291_C	1.459	1.00
81_M	85_E	1.454	1.00
134_Y	144_D	1.450	1.00
237_G	241_T	1.433	1.00
112_K	148_L	1.432	1.00
12_N	26_R	1.423	1.00
37_I	201_Q	1.386	1.00
130_I	134_Y	1.362	1.00
110_K	113_E	1.355	1.00
8_V	55_I	1.350	1.00
178_M	208_L	1.340	1.00
115_F	137_L	1.321	1.00
97_V	178_M	1.314	1.00
194_L	217_M	1.310	1.00
127_Y	131_D	1.306	1.00
32_I	38_I	1.293	1.00
9_K	31_D	1.281	1.00
197_L	208_L	1.272	1.00
112_K	116_T	1.268	1.00
36_K	223_D	1.244	1.00
37_I	208_L	1.234	1.00
30_I	51_L	1.232	1.00
9_K	29_S	1.230	1.00
155_L	163_V	1.212	1.00
130_I	148_L	1.204	1.00
57_G	60_N	1.197	1.00
30_I	226_A	1.194	1.00
40_V	209_V	1.189	1.00
113_E	116_T	1.182	1.00
110_K	149_D	1.179	1.00
131_D	135_N	1.171	1.00
108_I	153_F	1.161	1.00
252_Y	256_S	1.157	1.00
114_T	167_I	1.150	1.00
112_K	130_I	1.146	1.00
28_V	51_L	1.143	1.00
38_I	236_Y	1.140	1.00
81_M	86_L	1.140	1.00
56_M	96_Y	1.130	1.00
240_N	244_E	1.130	1.00
71_I	77_D	1.126	1.00
137_L	148_L	1.122	1.00
37_I	222_S	1.112	1.00
38_I	224_Y	1.111	1.00
34_E	73_D	1.102	1.00
54_T	61_P	1.097	1.00
85_E	88_K	1.087	1.00
75_K	81_M	1.084	1.00
128_A	131_D	1.075	1.00
139_E	199_K	1.062	1.00
201_Q	223_D	1.052	1.00
225_I	239_Y	1.051	1.00
10_N	67_R	1.042	1.00
32_I	175_I	1.042	1.00
115_F	170_L	1.041	1.00
116_T	120_K	1.037	1.00
33_P	224_Y	1.036	1.00
176_L	206_L	1.031	1.00
141_G	199_K	1.023	1.00
210_V	221_I	1.020	1.00
201_Q	208_L	1.010	1.00
34_E	205_D	1.010	1.00
138_E	144_D	1.005	1.00
143_T	147_V	1.004	1.00
129_N	133_V	1.001	1.00
53_T	58_F	0.997	1.00
135_N	138_E	0.996	1.00
283_K	288_S	0.994	1.00
14_G	26_R	0.991	1.00
109_R	117_D	0.990	1.00
55_I	209_V	0.983	1.00
176_L	208_L	0.982	1.00
249_P	252_Y	0.976	1.00
172_N	206_L	0.974	1.00
51_L	228_M	0.967	1.00
8_V	70_I	0.966	1.00
112_K	133_V	0.965	1.00
33_P	207_T	0.962	1.00
119_L	170_L	0.960	1.00
287_F	291_C	0.957	1.00
288_S	291_C	0.952	1.00
56_M	177_I	0.951	1.00
5_S	73_D	0.949	1.00
233_I	236_Y	0.948	1.00
134_Y	138_E	0.946	1.00
13_V	50_T	0.943	1.00
284_G	288_S	0.943	1.00
25_L	54_T	0.923	1.00
46_S	228_M	0.920	1.00
132_V	136_T	0.914	1.00
126_Y	129_N	0.913	1.00
241_T	244_E	0.911	1.00
242_L	251_T	0.901	1.00
5_S	72_V	0.899	1.00
136_T	139_E	0.896	1.00
138_E	143_T	0.893	1.00
185_L	193_I	0.892	1.00
282_P	288_S	0.892	1.00
95_S	168_S	0.890	1.00
109_R	114_T	0.889	1.00
40_V	226_A	0.882	1.00
83_R	86_L	0.880	1.00
37_I	198_K	0.877	1.00
128_A	132_V	0.872	1.00
94_I	175_I	0.872	1.00
232_Q	286_V	0.869	1.00
116_T	130_I	0.868	1.00
190_Q	217_M	0.865	1.00
130_I	149_D	0.863	1.00
122_K	132_V	0.862	1.00
26_R	286_V	0.862	1.00
24_V	50_T	0.862	1.00
224_Y	235_E	0.860	1.00
54_T	70_I	0.859	1.00
141_G	192_E	0.851	1.00
136_T	166_A	0.849	1.00
118_I	121_A	0.848	1.00
54_T	59_V	0.848	1.00
217_M	221_I	0.848	1.00
40_V	51_L	0.847	1.00
198_K	221_I	0.846	1.00
138_E	145_R	0.846	1.00
260_T	263_S	0.844	1.00
278_F	281_Y	0.839	1.00
13_V	25_L	0.836	1.00
286_V	289_S	0.833	1.00
190_Q	214_D	0.833	1.00
75_K	93_V	0.833	1.00
84_D	88_K	0.832	1.00
256_S	269_P	0.832	1.00
285_C	290_R	0.831	1.00
142_L	147_V	0.828	1.00
41_A	218_L	0.827	1.00
53_T	59_V	0.825	1.00
222_S	225_I	0.825	1.00
111_V	163_V	0.824	1.00
97_V	165_I	0.819	1.00
11_L	54_T	0.819	1.00
118_I	171_L	0.817	1.00
72_V	93_V	0.816	1.00
110_K	151_Y	0.815	1.00
281_Y	286_V	0.811	1.00
105_L	160_K	0.807	1.00
6_I	55_I	0.806	1.00
287_F	290_R	0.804	1.00
178_M	197_L	0.802	1.00
284_G	291_C	0.801	1.00
284_G	287_F	0.800	1.00
16_L	20_G	0.799	1.00
151_Y	154_Q	0.797	1.00
25_L	28_V	0.793	1.00
133_V	148_L	0.783	1.00
275_F	278_F	0.781	1.00
253_L	257_S	0.779	1.00
106_N	109_R	0.777	1.00
120_K	126_Y	0.777	1.00
282_P	289_S	0.776	1.00
118_I	167_I	0.770	1.00
273_G	276_E	0.770	1.00
249_P	253_L	0.769	1.00
285_C	288_S	0.767	1.00
32_I	207_T	0.767	1.00
84_D	87_N	0.764	1.00
136_T	169_L	0.763	1.00
37_I	221_I	0.761	1.00
125_D	129_N	0.759	1.00
95_S	173_P	0.756	1.00
28_V	233_I	0.754	1.00
227_V	246_A	0.753	1.00
10_N	13_V	0.751	1.00
210_V	222_S	0.749	1.00
243_L	246_A	0.748	1.00
248_H	251_T	0.748	1.00
27_N	232_Q	0.746	1.00
175_I	209_V	0.742	1.00
195_K	220_Q	0.736	1.00
229_Y	232_Q	0.734	1.00
198_K	202_K	0.733	1.00
61_P	66_E	0.730	1.00
194_L	220_Q	0.729	1.00
127_Y	130_I	0.724	1.00
239_Y	243_L	0.724	1.00
155_L	159_M	0.724	1.00
191_Y	195_K	0.723	1.00
251_T	255_L	0.722	1.00
152_P	163_V	0.719	1.00
77_D	81_M	0.719	1.00
37_I	223_D	0.716	1.00
140_V	166_A	0.716	1.00
111_V	155_L	0.715	1.00
15_Y	59_V	0.713	1.00
83_R	88_K	0.713	1.00
144_D	148_L	0.711	1.00
41_A	227_V	0.710	1.00
180_E	213_H	0.705	1.00
257_S	260_T	0.705	1.00
196_L	199_K	0.705	1.00
115_F	133_V	0.704	1.00
182_T	217_M	0.698	1.00
5_S	175_I	0.698	1.00
222_S	239_Y	0.696	1.00
229_Y	234_V	0.692	1.00
285_C	289_S	0.691	1.00
215_I	243_L	0.691	1.00
278_F	282_P	0.690	1.00
227_V	242_L	0.690	1.00
276_E	282_P	0.687	1.00
131_D	138_E	0.687	1.00
177_I	209_V	0.685	1.00
175_I	207_T	0.683	1.00
14_G	67_R	0.683	1.00
144_D	147_V	0.681	1.00
122_K	129_N	0.681	1.00
55_I	70_I	0.680	1.00
32_I	209_V	0.677	1.00
286_V	290_R	0.676	1.00
134_Y	145_R	0.675	1.00
276_E	280_R	0.675	1.00
6_I	175_I	0.672	1.00
272_P	275_F	0.670	1.00
25_L	51_L	0.670	1.00
195_K	198_K	0.666	1.00
6_I	72_V	0.666	1.00
272_P	276_E	0.666	1.00
38_I	209_V	0.666	1.00
69_S	79_L	0.662	1.00
277_G	280_R	0.662	1.00
280_R	284_G	0.660	1.00
105_L	163_V	0.657	1.00
49_S	53_T	0.656	1.00
54_T	66_E	0.653	1.00
271_I	274_D	0.653	1.00
281_Y	284_G	0.651	1.00
150_M	155_L	0.650	1.00
195_K	199_K	0.649	1.00
117_D	121_A	0.644	1.00
119_L	123_G	0.644	1.00
58_F	98_P	0.643	1.00
147_V	159_M	0.640	1.00
53_T	96_Y	0.639	1.00
270_R	274_D	0.639	1.00
56_M	94_I	0.637	1.00
277_G	281_Y	0.636	1.00
103_N	160_K	0.635	1.00
72_V	175_I	0.635	1.00
274_D	278_F	0.634	1.00
282_P	285_C	0.628	1.00
142_L	159_M	0.627	1.00
116_T	148_L	0.626	1.00
10_N	68_G	0.626	1.00
124_M	129_N	0.625	1.00
69_S	80_S	0.625	1.00
82_S	86_L	0.622	1.00
78_I	94_I	0.620	1.00
105_L	114_T	0.619	1.00
70_I	79_L	0.617	1.00
281_Y	285_C	0.617	1.00
5_S	207_T	0.616	1.00
273_G	277_G	0.615	1.00
234_V	248_H	0.615	1.00
119_L	122_K	0.614	1.00
278_F	283_K	0.613	1.00
97_V	168_S	0.612	1.00
278_F	284_G	0.612	1.00
284_G	289_S	0.610	1.00
110_K	114_T	0.609	1.00
71_I	74_S	0.607	1.00
34_E	207_T	0.607	1.00
100_A	103_N	0.605	1.00
35_S	207_T	0.605	1.00
278_F	286_V	0.603	1.00
112_K	115_F	0.603	1.00
124_M	128_A	0.602	1.00
269_P	273_G	0.601	1.00
72_V	78_I	0.600	1.00
283_K	287_F	0.598	1.00
8_V	51_L	0.598	1.00
95_S	99_Q	0.594	1.00
126_Y	130_I	0.594	1.00
239_Y	250_Y	0.594	1.00
275_F	289_S	0.593	1.00
283_K	289_S	0.590	1.00
253_L	256_S	0.587	1.00
273_G	278_F	0.586	1.00
280_R	283_K	0.586	1.00
122_K	125_D	0.585	1.00
43_E	46_S	0.581	1.00
27_N	67_R	0.580	1.00
169_L	206_L	0.580	1.00
271_I	275_F	0.579	1.00
218_L	222_S	0.578	1.00
114_T	152_P	0.575	1.00
268_L	271_I	0.575	1.00
267_K	270_R	0.574	1.00
12_N	66_E	0.574	1.00
165_I	193_I	0.572	1.00
132_V	139_E	0.571	1.00
130_I	133_V	0.569	1.00
131_D	134_Y	0.567	1.00
229_Y	253_L	0.564	1.00
270_R	275_F	0.564	1.00
274_D	277_G	0.561	1.00
145_R	150_M	0.559	1.00
277_G	282_P	0.555	1.00
112_K	134_Y	0.552	1.00
83_R	87_N	0.552	1.00
270_R	273_G	0.552	1.00
242_L	246_A	0.551	1.00
241_T	247_Y	0.550	1.00
218_L	225_I	0.548	1.00
115_F	118_I	0.545	1.00
250_Y	254_L	0.541	1.00
237_G	246_A	0.541	1.00
78_I	86_L	0.540	1.00
119_L	124_M	0.540	1.00
78_I	81_M	0.540	1.00
216_A	220_Q	0.537	1.00
237_G	243_L	0.536	1.00
277_G	288_S	0.536	1.00
133_V	170_L	0.535	1.00
267_K	271_I	0.534	1.00
36_K	236_Y	0.534	1.00
232_Q	236_Y	0.533	1.00
276_E	279_I	0.530	1.00
282_P	291_C	0.529	1.00
252_Y	255_L	0.529	1.00
275_F	279_I	0.528	1.00
137_L	147_V	0.528	1.00
31_D	236_Y	0.525	1.00
104_S	164_V	0.521	1.00
258_V	262_R	0.520	1.00
119_L	171_L	0.520	1.00
161_Q	184_G	0.519	1.00
250_Y	253_L	0.518	1.00
99_Q	157_G	0.515	1.00
276_E	284_G	0.512	1.00
197_L	221_I	0.512	1.00
279_I	282_P	0.512	1.00
283_K	286_V	0.511	1.00
279_I	284_G	0.510	1.00
182_T	193_I	0.506	1.00
269_P	272_P	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3tuiC	2	0.9547	100	0.19	Contact Map
4fwiB	1	0.9305	100	0.192	Contact Map
4mkiB	2	0.852	100	0.222	Contact Map
1b0uA	2	0.7432	100	0.223	Contact Map
1g291	4	0.8671	100	0.224	Contact Map
4ry2A	2	0.719	100	0.224	Contact Map
4huqB	1	0.8308	100	0.226	Contact Map
2yyzA	1	0.9335	100	0.227	Contact Map
1v43A	2	0.8973	100	0.228	Contact Map
2it1A	1	0.9366	100	0.228	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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