Q97UH2 - SULSO - GREMLIN Contacts

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Q97UH2 - ABC transporter, permease

UniProt:	Q97UH2	Sequences: MYKMASRKLNTFNLKIDKYGPVYNLIRGVWEQRVSRVGFYILLGIIVFSLIGVFYTPYNPSATNFPRDLPPSPQHLLGTDDYGHDIFSQLLVGGFPVIGVGFAVGLIGTLIAILIGVTAGLYAETIIDRILSAITQIFLIIPGILIIELIGAYLGALQFKLGYITILLTLSLTGWAWGARVLRSLVLSLRRREYILSSDLIGESKLSVIFNQIIPNNLPFIASNFFFTAIYGIAGFTFIYYFGLGSLTQVNWGTMLYWSLGGEAYLRGLWWWYIPPGLMIGLVAFSFALINIGIDRVANPRLRIWDVKKYMKKIEKTKEKEEVMTR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	326 (253)
Sequences:	28261 (17608)
Seq/√Len:	1107.0

ECOLI - DPPC DDPC GSID YEJE OPPC SAPC NIKC YEJB DDPB GSIC NIKB SAPB DPPB OPPB
BACSU - DPPC APPC OPPC OPPB DPPB APPB
HALSA - Q9HMW2 Q9HMI1 Q9HMX1 Q9HMX0 Q9HMI2 Q9HMW3
SULSO - Q97UH2 Q97UG3 Q97YP2 Q97YP9 Q97VK7 Q97VF6 Q97VF8 Q97VK6 Q97UH1 Q97YP1 Q97UG4 Q97YQ0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
186_V	213_I	2.819	1.00
128_D	183_R	2.772	1.00
199_D	205_K	2.502	1.00
189_L	194_Y	2.491	1.00
203_E	207_S	2.460	1.00
207_S	211_N	2.456	1.00
115_I	131_L	2.424	1.00
189_L	192_R	2.380	1.00
96_P	241_Y	2.362	1.00
103_A	167_L	2.356	1.00
107_I	171_S	2.302	1.00
206_L	210_F	2.280	1.00
204_S	207_S	2.279	1.00
193_E	196_L	2.187	1.00
195_I	213_I	2.073	1.00
226_F	291_N	2.041	1.00
195_I	208_V	2.025	1.00
89_Q	255_M	2.012	1.00
117_V	186_V	1.994	1.00
122_Y	205_K	1.944	1.00
118_T	122_Y	1.939	1.00
122_Y	127_I	1.924	1.00
73_P	76_L	1.919	1.00
85_D	88_S	1.914	1.00
110_L	114_L	1.890	1.00
80_D	84_H	1.831	1.00
59_N	62_A	1.811	1.00
254_T	263_E	1.799	1.00
121_L	205_K	1.792	1.00
194_Y	216_N	1.776	1.00
49_S	94_G	1.746	1.00
189_L	217_N	1.730	1.00
126_I	130_I	1.723	1.00
120_G	186_V	1.711	1.00
43_L	47_V	1.707	1.00
87_F	91_L	1.680	1.00
111_I	175_W	1.666	1.00
77_L	275_P	1.663	1.00
111_I	114_L	1.662	1.00
86_I	275_P	1.658	1.00
127_I	131_L	1.654	1.00
82_Y	89_Q	1.647	1.00
190_R	213_I	1.644	1.00
99_G	103_A	1.602	1.00
118_T	127_I	1.582	1.00
108_G	174_G	1.577	1.00
121_L	209_I	1.564	1.00
167_L	171_S	1.560	1.00
109_T	225_F	1.555	1.00
64_N	68_D	1.542	1.00
131_L	179_A	1.538	1.00
185_L	188_S	1.533	1.00
135_T	179_A	1.526	1.00
35_S	293_G	1.510	1.00
92_V	95_F	1.498	1.00
75_H	85_D	1.492	1.00
105_G	225_F	1.468	1.00
84_H	88_S	1.466	1.00
112_A	178_G	1.448	1.00
188_S	192_R	1.437	1.00
256_L	276_P	1.423	1.00
38_G	286_S	1.421	1.00
112_A	182_L	1.416	1.00
133_A	136_Q	1.399	1.00
197_S	201_I	1.389	1.00
145_L	149_L	1.364	1.00
116_G	182_L	1.361	1.00
223_S	295_D	1.354	1.00
116_G	120_G	1.350	1.00
183_R	187_L	1.348	1.00
189_L	195_I	1.334	1.00
171_S	175_W	1.330	1.00
120_G	190_R	1.329	1.00
51_I	54_F	1.316	1.00
45_I	281_G	1.315	1.00
115_I	179_A	1.303	1.00
77_L	87_F	1.298	1.00
189_L	213_I	1.295	1.00
47_V	51_I	1.293	1.00
295_D	299_N	1.288	1.00
65_F	68_D	1.286	1.00
117_V	209_I	1.282	1.00
33_R	36_R	1.274	1.00
126_I	129_R	1.273	1.00
270_W	274_I	1.269	1.00
294_I	297_V	1.260	1.00
181_V	224_N	1.255	1.00
164_I	168_L	1.248	1.00
72_S	77_L	1.245	1.00
119_A	131_L	1.237	1.00
150_I	169_T	1.235	1.00
96_P	99_G	1.229	1.00
36_R	40_Y	1.229	1.00
198_S	212_Q	1.210	1.00
90_L	279_M	1.206	1.00
222_A	298_A	1.194	1.00
178_G	228_T	1.187	1.00
123_A	190_R	1.185	1.00
117_V	214_I	1.180	1.00
72_S	75_H	1.178	1.00
84_H	89_Q	1.171	1.00
293_G	297_V	1.147	1.00
186_V	217_N	1.143	1.00
198_S	208_V	1.134	1.00
100_V	236_F	1.134	1.00
138_F	176_A	1.130	1.00
84_H	92_V	1.120	1.00
182_L	221_I	1.110	1.00
129_R	133_A	1.107	1.00
77_L	90_L	1.106	1.00
169_T	173_T	1.105	1.00
42_L	282_L	1.101	1.00
113_I	182_L	1.100	1.00
198_S	203_E	1.096	1.00
196_L	199_D	1.095	1.00
45_I	283_V	1.094	1.00
52_G	92_V	1.091	1.00
182_L	186_V	1.089	1.00
276_P	280_I	1.082	1.00
114_L	117_V	1.080	1.00
255_M	272_W	1.078	1.00
38_G	293_G	1.076	1.00
79_T	85_D	1.076	1.00
56_T	88_S	1.065	1.00
201_I	212_Q	1.063	1.00
207_S	210_F	1.057	1.00
40_Y	44_G	1.047	1.00
185_L	189_L	1.046	1.00
42_L	286_S	1.044	1.00
132_S	179_A	1.043	1.00
134_I	138_F	1.041	1.00
141_I	146_I	1.036	1.00
37_V	40_Y	1.036	1.00
147_I	169_T	1.034	1.00
175_W	179_A	1.032	1.00
86_I	255_M	1.018	1.00
164_I	167_L	1.014	1.00
86_I	272_W	1.013	1.00
104_V	171_S	1.013	1.00
162_G	165_T	1.010	1.00
128_D	132_S	1.008	1.00
127_I	130_I	1.004	1.00
69_L	72_S	1.002	1.00
199_D	208_V	1.000	1.00
128_D	187_L	1.000	1.00
88_S	92_V	0.997	1.00
123_A	191_R	0.996	1.00
99_G	163_Y	0.992	1.00
40_Y	43_L	0.988	1.00
89_Q	272_W	0.987	1.00
95_F	99_G	0.986	1.00
64_N	67_R	0.980	1.00
275_P	278_L	0.978	1.00
124_E	128_D	0.973	1.00
286_S	290_I	0.970	1.00
38_G	289_L	0.969	1.00
198_S	201_I	0.968	1.00
44_G	48_F	0.968	1.00
219_P	295_D	0.968	1.00
130_I	134_I	0.966	1.00
41_I	282_L	0.966	1.00
104_V	108_G	0.965	1.00
64_N	69_L	0.965	1.00
38_G	285_F	0.962	1.00
41_I	286_S	0.951	1.00
116_G	186_V	0.950	1.00
58_Y	74_Q	0.947	1.00
93_G	255_M	0.945	1.00
182_L	217_N	0.943	1.00
271_W	275_P	0.939	1.00
99_G	102_F	0.933	1.00
90_L	275_P	0.931	1.00
203_E	208_V	0.928	1.00
68_D	71_P	0.928	1.00
39_F	43_L	0.921	1.00
129_R	132_S	0.917	1.00
113_I	221_I	0.912	1.00
205_K	208_V	0.909	1.00
104_V	170_L	0.909	1.00
72_S	76_L	0.909	1.00
58_Y	88_S	0.908	1.00
65_F	69_L	0.892	1.00
143_G	235_G	0.888	1.00
217_N	220_F	0.882	1.00
222_A	291_N	0.882	1.00
109_T	113_I	0.880	1.00
154_L	165_T	0.868	1.00
287_F	291_N	0.866	1.00
170_L	235_G	0.865	1.00
39_F	290_I	0.860	1.00
48_F	91_L	0.857	1.00
89_Q	92_V	0.854	1.00
184_S	187_L	0.850	1.00
135_T	176_A	0.848	1.00
110_L	113_I	0.845	1.00
124_E	129_R	0.843	1.00
163_Y	167_L	0.841	1.00
109_T	178_G	0.840	1.00
50_L	54_F	0.835	1.00
57_P	88_S	0.835	1.00
88_S	91_L	0.834	1.00
79_T	83_G	0.832	1.00
168_L	171_S	0.828	1.00
210_F	213_I	0.827	1.00
54_F	270_W	0.823	1.00
91_L	95_F	0.822	1.00
66_P	69_L	0.819	1.00
205_K	209_I	0.819	1.00
192_R	196_L	0.816	1.00
94_G	283_V	0.814	1.00
143_G	147_I	0.812	1.00
104_V	232_G	0.811	1.00
64_N	71_P	0.811	1.00
115_I	175_W	0.806	1.00
114_L	118_T	0.805	1.00
35_S	39_F	0.800	1.00
109_T	114_L	0.799	1.00
186_V	190_R	0.796	1.00
35_S	289_L	0.794	1.00
103_A	241_Y	0.794	1.00
189_L	216_N	0.788	1.00
265_Y	268_G	0.786	1.00
165_T	168_L	0.783	1.00
105_G	228_T	0.774	1.00
196_L	200_L	0.773	1.00
120_G	187_L	0.772	1.00
295_D	302_L	0.769	1.00
280_I	284_A	0.768	1.00
203_E	212_Q	0.768	1.00
255_M	276_P	0.767	1.00
150_I	165_T	0.767	1.00
274_I	278_L	0.765	1.00
275_P	279_M	0.765	1.00
257_Y	266_L	0.762	1.00
263_E	267_R	0.762	1.00
107_I	167_L	0.759	1.00
48_F	94_G	0.757	1.00
97_V	101_G	0.757	1.00
76_L	87_F	0.755	1.00
34_V	38_G	0.754	1.00
103_A	106_L	0.750	1.00
224_N	228_T	0.748	1.00
119_A	128_D	0.747	1.00
102_F	106_L	0.746	1.00
226_F	287_F	0.744	1.00
75_H	79_T	0.734	1.00
296_R	302_L	0.729	1.00
46_I	278_L	0.727	1.00
111_I	171_S	0.726	1.00
182_L	185_L	0.724	1.00
206_L	209_I	0.724	1.00
51_I	55_Y	0.724	1.00
58_Y	75_H	0.722	1.00
80_D	269_L	0.720	1.00
257_Y	263_E	0.718	1.00
91_L	94_G	0.716	1.00
282_L	286_S	0.712	1.00
72_S	278_L	0.711	1.00
37_V	41_I	0.709	1.00
130_I	133_A	0.706	1.00
155_G	165_T	0.702	1.00
70_P	271_W	0.700	1.00
67_R	70_P	0.699	1.00
290_I	294_I	0.698	1.00
139_L	176_A	0.694	1.00
185_L	220_F	0.693	1.00
208_V	213_I	0.692	1.00
112_A	116_G	0.684	1.00
42_L	287_F	0.682	1.00
108_G	171_S	0.681	1.00
274_I	277_G	0.679	1.00
45_I	282_L	0.679	1.00
65_F	71_P	0.678	1.00
185_L	217_N	0.677	1.00
90_L	276_P	0.677	1.00
111_I	115_I	0.676	1.00
119_A	132_S	0.672	1.00
38_G	41_I	0.671	1.00
273_Y	277_G	0.670	1.00
236_F	240_Y	0.670	1.00
57_P	87_F	0.666	1.00
76_L	85_D	0.665	1.00
174_G	177_W	0.665	1.00
284_A	288_A	0.661	1.00
263_E	266_L	0.657	1.00
173_T	176_A	0.653	1.00
234_A	237_T	0.652	1.00
132_S	135_T	0.643	1.00
161_L	164_I	0.641	1.00
166_I	236_F	0.637	1.00
48_F	52_G	0.627	1.00
203_E	206_L	0.627	1.00
122_Y	209_I	0.627	1.00
61_S	65_F	0.626	1.00
131_L	135_T	0.626	1.00
187_L	190_R	0.624	1.00
62_A	66_P	0.624	1.00
71_P	271_W	0.623	1.00
143_G	146_I	0.621	1.00
123_A	126_I	0.618	1.00
178_G	224_N	0.618	1.00
53_V	95_F	0.618	1.00
178_G	182_L	0.616	1.00
36_R	39_F	0.613	1.00
123_A	128_D	0.612	1.00
149_L	153_Y	0.608	1.00
135_T	175_W	0.607	1.00
235_G	238_F	0.606	1.00
121_L	210_F	0.606	1.00
121_L	190_R	0.604	1.00
234_A	238_F	0.603	1.00
101_G	232_G	0.598	1.00
56_T	92_V	0.596	1.00
58_Y	268_G	0.591	1.00
237_T	254_T	0.589	1.00
106_L	110_L	0.588	1.00
152_A	156_A	0.588	1.00
133_A	137_I	0.582	1.00
123_A	187_L	0.579	1.00
176_A	179_A	0.579	1.00
289_L	293_G	0.579	1.00
146_I	173_T	0.579	1.00
109_T	221_I	0.578	1.00
138_F	175_W	0.578	1.00
256_L	280_I	0.575	1.00
230_I	284_A	0.574	1.00
98_I	102_F	0.572	1.00
68_D	269_L	0.572	1.00
49_S	277_G	0.571	1.00
38_G	42_L	0.568	1.00
46_I	50_L	0.568	1.00
94_G	98_I	0.566	1.00
112_A	179_A	0.564	1.00
232_G	235_G	0.562	1.00
69_L	79_T	0.562	1.00
210_F	215_P	0.562	1.00
233_I	237_T	0.561	1.00
143_G	172_L	0.559	1.00
65_F	70_P	0.559	1.00
218_L	222_A	0.555	1.00
33_R	37_V	0.555	1.00
119_A	183_R	0.555	1.00
103_A	164_I	0.553	1.00
237_T	257_Y	0.553	1.00
165_T	169_T	0.552	1.00
64_N	75_H	0.549	1.00
296_R	303_R	0.549	1.00
181_V	185_L	0.547	1.00
195_I	199_D	0.546	1.00
95_F	98_I	0.544	1.00
292_I	295_D	0.542	1.00
41_I	45_I	0.541	1.00
204_S	208_V	0.539	1.00
168_L	172_L	0.539	1.00
264_A	268_G	0.538	1.00
45_I	49_S	0.538	1.00
93_G	254_T	0.533	1.00
117_V	182_L	0.532	1.00
42_L	290_I	0.532	1.00
271_W	274_I	0.530	1.00
172_L	175_W	0.524	1.00
100_V	167_L	0.523	1.00
132_S	136_Q	0.523	1.00
136_Q	139_L	0.523	1.00
147_I	238_F	0.522	1.00
223_S	226_F	0.520	1.00
106_L	109_T	0.519	1.00
115_I	118_T	0.518	1.00
145_L	148_E	0.516	1.00
89_Q	93_G	0.516	1.00
100_V	166_I	0.515	1.00
151_G	155_G	0.514	1.00
105_G	109_T	0.511	1.00
264_A	272_W	0.509	1.00
174_G	228_T	0.508	1.00
64_N	70_P	0.507	1.00
53_V	92_V	0.506	1.00
210_F	214_I	0.503	1.00
194_Y	198_S	0.501	1.00
229_A	287_F	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4tquM	1	0.7914	99.9	0.657	Contact Map
3tuiA	2	0.638	99.9	0.687	Contact Map
3d31C	2	0.7239	99.9	0.688	Contact Map
2onkC	2	0.7423	99.9	0.699	Contact Map
3rlfF	1	0.8589	99.9	0.701	Contact Map
4tquN	1	0.8067	99.9	0.709	Contact Map
3rlfG	1	0.8129	99.9	0.712	Contact Map
4ymuD	2	0.6564	99.8	0.72	Contact Map
3j9pD	4	0.7822	81.1	0.938	Contact Map
3rvyA	3	0.6258	75.8	0.941	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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