Q97UG4 - SULSO - GREMLIN Contacts

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Q97UG4 - Maltose ABC transporter, permease

UniProt:	Q97UG4	Sequences: MATFFVVITVNFILPRLMPGSALAVVISLIEGQNGVAATAGSSAIALEVSQLEAAFGLTPAPWYVQYAHYIQGIFTLNLGASITYYPTPVLSIILSGLPWTLFLVVVGAIIAFFLGSYLGSIAGFNRRSRKDLVILIITSILAALPSFVILMYLEMWLSVQHGIFLISFPSKINTSPNSIMALSRFYTLPIIALMFTSLSGFVLGMRNNMLHTIRDNYVTYAEILGLDHNRIRKMVYKNSLLPNITAFAIILGLAISQSLTVEGLLTTPGVGFFFGLALTSKDLPLLQGIFLFIAIMLILSIAIVEAIYTILDPRARVSESE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	322 (293)
Sequences:	15264 (9759)
Seq/√Len:	570.1

ECOLI - YEJB DDPB DPPB NIKB GSIC OPPB SAPB YEJE DPPC SAPC DDPC GSID NIKC OPPC
BACSU - APPB OPPB DPPB DPPC APPC OPPC
HALSA - Q9HMX0 Q9HMI2 Q9HMW3 Q9HMW2 Q9HMI1
SULSO - Q97UG4 Q97UH1 Q97YQ0 Q97VF8 Q97VK6 Q97YP1 Q97VK7 Q97UG3 Q97UH2 Q97YP2 Q97VF6 Q97YP9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
61_A	65_V	3.521	1.00
61_A	69_H	3.420	1.00
16_R	66_Q	3.365	1.00
72_Q	76_T	2.976	1.00
68_A	72_Q	2.898	1.00
54_A	59_T	2.773	1.00
8_I	67_Y	2.678	1.00
46_A	50_S	2.644	1.00
21_S	53_E	2.598	1.00
210_M	236_V	2.569	1.00
107_V	191_I	2.523	1.00
100_W	268_T	2.454	1.00
231_R	234_K	2.422	1.00
9_T	67_Y	2.353	1.00
273_F	277_L	2.298	1.00
223_E	229_H	2.282	1.00
64_Y	68_A	2.251	1.00
219_V	236_V	2.236	1.00
93_I	274_F	2.074	1.00
7_V	295_A	2.066	1.00
49_V	53_E	2.041	1.00
85_Y	93_I	2.006	1.00
89_P	92_S	1.967	1.00
249_A	305_V	1.942	1.00
48_E	51_Q	1.932	1.00
214_I	236_V	1.923	1.00
213_T	218_Y	1.919	1.00
165_F	188_T	1.916	1.00
165_F	185_R	1.884	1.00
51_Q	55_A	1.845	1.00
228_D	231_R	1.844	1.00
126_N	129_S	1.825	1.00
245_I	312_L	1.820	1.00
45_I	48_E	1.819	1.00
111_I	195_M	1.797	1.00
65_V	69_H	1.778	1.00
114_F	118_Y	1.752	1.00
221_Y	225_L	1.748	1.00
88_T	92_S	1.737	1.00
213_T	216_D	1.733	1.00
159_S	167_I	1.703	1.00
73_G	78_N	1.689	1.00
50_S	53_E	1.684	1.00
4_F	296_I	1.677	1.00
90_V	289_G	1.670	1.00
50_S	54_A	1.644	1.00
119_L	135_I	1.638	1.00
219_V	232_I	1.625	1.00
125_F	233_R	1.615	1.00
69_H	72_Q	1.613	1.00
5_F	9_T	1.581	1.00
74_I	79_L	1.570	1.00
122_I	126_N	1.564	1.00
156_M	161_Q	1.562	1.00
246_T	309_Y	1.560	1.00
130_R	134_V	1.554	1.00
157_W	161_Q	1.551	1.00
170_P	268_T	1.543	1.00
181_M	185_R	1.541	1.00
132_D	207_R	1.540	1.00
91_L	95_L	1.516	1.00
5_F	67_Y	1.516	1.00
154_L	193_A	1.512	1.00
122_I	131_K	1.507	1.00
275_F	290_I	1.489	1.00
308_I	311_I	1.487	1.00
88_T	96_S	1.461	1.00
131_K	135_I	1.457	1.00
115_L	118_Y	1.439	1.00
278_A	286_L	1.436	1.00
69_H	73_G	1.430	1.00
225_L	235_M	1.425	1.00
191_I	195_M	1.422	1.00
23_L	49_V	1.420	1.00
149_V	153_Y	1.419	1.00
93_I	286_L	1.417	1.00
126_N	131_K	1.409	1.00
100_W	170_P	1.398	1.00
124_G	210_M	1.398	1.00
274_F	286_L	1.387	1.00
112_A	198_S	1.387	1.00
103_F	170_P	1.377	1.00
52_L	55_A	1.373	1.00
115_L	199_L	1.365	1.00
227_L	231_R	1.357	1.00
52_L	56_F	1.355	1.00
121_S	210_M	1.355	1.00
218_Y	239_N	1.341	1.00
195_M	199_L	1.333	1.00
57_G	61_A	1.332	1.00
213_T	219_V	1.326	1.00
157_W	162_H	1.326	1.00
62_P	65_V	1.316	1.00
8_I	70_Y	1.299	1.00
213_T	240_S	1.275	1.00
242_L	309_Y	1.265	1.00
57_G	69_H	1.263	1.00
172_K	182_A	1.254	1.00
113_F	248_F	1.246	1.00
128_R	132_D	1.244	1.00
65_V	68_A	1.242	1.00
81_A	89_P	1.237	1.00
9_T	13_I	1.233	1.00
145_L	150_I	1.231	1.00
24_A	49_V	1.221	1.00
116_G	206_M	1.221	1.00
206_M	244_N	1.219	1.00
103_F	183_L	1.218	1.00
82_S	283_D	1.207	1.00
120_G	124_G	1.204	1.00
182_A	186_F	1.199	1.00
109_A	248_F	1.195	1.00
217_N	220_T	1.194	1.00
153_Y	157_W	1.189	1.00
5_F	71_I	1.180	1.00
88_T	93_I	1.146	1.00
84_T	281_S	1.137	1.00
79_L	289_G	1.134	1.00
9_T	63_W	1.129	1.00
124_G	211_L	1.128	1.00
120_G	206_M	1.123	1.00
154_L	189_L	1.123	1.00
165_F	189_L	1.121	1.00
142_L	200_S	1.108	1.00
307_A	311_I	1.100	1.00
96_S	99_P	1.098	1.00
21_S	24_A	1.098	1.00
290_I	294_I	1.096	1.00
184_S	188_T	1.094	1.00
4_F	299_I	1.093	1.00
158_L	162_H	1.093	1.00
100_W	103_F	1.091	1.00
8_I	292_L	1.089	1.00
207_R	211_L	1.086	1.00
229_H	232_I	1.082	1.00
20_G	282_K	1.072	1.00
276_G	280_T	1.070	1.00
92_S	96_S	1.067	1.00
116_G	202_F	1.066	1.00
93_I	96_S	1.064	1.00
193_A	197_T	1.062	1.00
79_L	91_L	1.062	1.00
61_A	64_Y	1.057	1.00
301_S	305_V	1.053	1.00
135_I	203_V	1.053	1.00
172_K	186_F	1.052	1.00
277_L	281_S	1.051	1.00
171_S	186_F	1.050	1.00
111_I	191_I	1.049	1.00
16_R	63_W	1.048	1.00
103_F	187_Y	1.044	1.00
51_Q	54_A	1.043	1.00
158_L	165_F	1.040	1.00
95_L	99_P	1.032	1.00
27_I	52_L	1.031	1.00
103_F	107_V	1.030	1.00
67_Y	71_I	1.026	1.00
119_L	203_V	1.018	1.00
74_I	292_L	1.016	1.00
151_L	265_L	1.012	1.00
304_I	308_I	1.012	1.00
151_L	193_A	1.007	1.00
147_S	262_V	1.001	1.00
123_A	135_I	1.000	1.00
188_T	192_I	0.998	1.00
187_Y	191_I	0.984	1.00
92_S	95_L	0.982	1.00
54_A	61_A	0.978	1.00
227_L	232_I	0.976	1.00
205_G	247_A	0.971	1.00
105_V	255_A	0.962	1.00
13_I	16_R	0.961	1.00
139_T	203_V	0.955	1.00
252_L	301_S	0.953	1.00
124_G	214_I	0.951	1.00
213_T	236_V	0.945	1.00
72_Q	75_F	0.938	1.00
128_R	133_L	0.936	1.00
264_G	273_F	0.934	1.00
182_A	185_R	0.931	1.00
73_G	76_T	0.929	1.00
23_L	27_I	0.926	1.00
209_N	240_S	0.924	1.00
106_V	110_I	0.921	1.00
245_I	305_V	0.920	1.00
6_V	10_V	0.916	1.00
132_D	211_L	0.916	1.00
253_G	298_L	0.915	1.00
127_R	215_R	0.914	1.00
223_E	232_I	0.913	1.00
47_L	51_Q	0.912	1.00
109_A	252_L	0.911	1.00
83_I	285_P	0.910	1.00
259_S	262_V	0.908	1.00
202_F	251_I	0.898	1.00
97_G	274_F	0.898	1.00
41_G	44_A	0.893	1.00
118_Y	121_S	0.893	1.00
70_Y	74_I	0.890	1.00
206_M	210_M	0.888	1.00
310_T	316_A	0.888	1.00
307_A	310_T	0.883	1.00
108_G	195_M	0.875	1.00
150_I	196_F	0.872	1.00
23_L	53_E	0.872	1.00
81_A	87_P	0.871	1.00
13_I	63_W	0.870	1.00
232_I	236_V	0.869	1.00
130_R	133_L	0.868	1.00
274_F	278_A	0.862	1.00
27_I	44_A	0.848	1.00
181_M	184_S	0.838	1.00
106_V	252_L	0.838	1.00
121_S	233_R	0.834	1.00
300_L	304_I	0.834	1.00
12_F	16_R	0.832	1.00
99_P	102_L	0.831	1.00
125_F	229_H	0.829	1.00
68_A	71_I	0.829	1.00
85_Y	88_T	0.826	1.00
94_I	290_I	0.826	1.00
94_I	289_G	0.825	1.00
118_Y	122_I	0.824	1.00
101_T	105_V	0.820	1.00
107_V	268_T	0.817	1.00
127_R	211_L	0.815	1.00
138_I	142_L	0.809	1.00
170_P	183_L	0.808	1.00
142_L	196_F	0.806	1.00
116_G	203_V	0.805	1.00
46_A	49_V	0.804	1.00
16_R	284_L	0.801	1.00
47_L	50_S	0.801	1.00
11_N	291_F	0.801	1.00
116_G	120_G	0.798	1.00
108_G	194_L	0.798	1.00
9_T	64_Y	0.797	1.00
134_V	138_I	0.796	1.00
158_L	164_I	0.793	1.00
171_S	182_A	0.792	1.00
108_G	112_A	0.792	1.00
3_T	299_I	0.791	1.00
222_A	232_I	0.789	1.00
170_P	187_Y	0.785	1.00
120_G	210_M	0.785	1.00
72_Q	77_L	0.783	1.00
113_F	118_Y	0.781	1.00
133_L	136_L	0.780	1.00
136_L	203_V	0.779	1.00
296_I	300_L	0.777	1.00
309_Y	316_A	0.774	1.00
147_S	196_F	0.773	1.00
119_L	199_L	0.768	1.00
107_V	187_Y	0.768	1.00
185_R	188_T	0.768	1.00
193_A	262_V	0.767	1.00
117_S	206_M	0.767	1.00
154_L	192_I	0.767	1.00
277_L	280_T	0.763	1.00
103_F	106_V	0.762	1.00
229_H	233_R	0.762	1.00
192_I	195_M	0.756	1.00
172_K	183_L	0.754	1.00
222_A	227_L	0.752	1.00
44_A	49_V	0.749	1.00
102_L	106_V	0.745	1.00
245_I	308_I	0.743	1.00
71_I	75_F	0.739	1.00
240_S	243_P	0.738	1.00
23_L	52_L	0.737	1.00
274_F	290_I	0.737	1.00
112_A	195_M	0.732	1.00
183_L	186_F	0.732	1.00
188_T	191_I	0.726	1.00
131_K	134_V	0.726	1.00
155_E	167_I	0.725	1.00
278_A	287_L	0.725	1.00
264_G	276_G	0.722	1.00
222_A	225_L	0.720	1.00
50_S	59_T	0.719	1.00
206_M	237_Y	0.717	1.00
23_L	56_F	0.717	1.00
107_V	184_S	0.717	1.00
206_M	240_S	0.717	1.00
169_F	186_F	0.715	1.00
199_L	203_V	0.710	1.00
269_P	273_F	0.708	1.00
284_L	288_Q	0.705	1.00
156_M	160_V	0.703	1.00
194_L	259_S	0.698	1.00
253_G	301_S	0.698	1.00
101_T	259_S	0.698	1.00
115_L	195_M	0.696	1.00
166_L	186_F	0.693	1.00
264_G	277_L	0.692	1.00
111_I	192_I	0.689	1.00
107_V	188_T	0.688	1.00
260_L	276_G	0.683	1.00
71_I	74_I	0.683	1.00
161_Q	164_I	0.683	1.00
121_S	237_Y	0.682	1.00
107_V	111_I	0.680	1.00
104_L	191_I	0.680	1.00
168_S	267_T	0.677	1.00
233_R	236_V	0.676	1.00
26_V	52_L	0.675	1.00
310_T	317_R	0.672	1.00
135_I	139_T	0.671	1.00
288_Q	291_F	0.670	1.00
98_L	102_L	0.670	1.00
16_R	288_Q	0.667	1.00
314_P	317_R	0.667	1.00
15_P	287_L	0.659	1.00
171_S	183_L	0.659	1.00
13_I	17_L	0.657	1.00
115_L	119_L	0.654	1.00
218_Y	222_A	0.653	1.00
53_E	59_T	0.651	1.00
94_I	271_V	0.649	1.00
22_A	284_L	0.647	1.00
123_A	132_D	0.647	1.00
206_M	209_N	0.644	1.00
275_F	294_I	0.643	1.00
134_V	137_I	0.643	1.00
97_G	273_F	0.641	1.00
105_V	109_A	0.636	1.00
158_L	189_L	0.636	1.00
289_G	293_F	0.633	1.00
297_M	301_S	0.632	1.00
145_L	149_V	0.631	1.00
147_S	197_T	0.629	1.00
149_V	152_M	0.628	1.00
6_V	9_T	0.626	1.00
48_E	52_L	0.623	1.00
286_L	290_I	0.623	1.00
117_S	244_N	0.622	1.00
242_L	316_A	0.617	1.00
99_P	103_F	0.614	1.00
303_A	307_A	0.614	1.00
93_I	97_G	0.613	1.00
158_L	161_Q	0.612	1.00
305_V	309_Y	0.612	1.00
198_S	201_G	0.610	1.00
129_S	133_L	0.608	1.00
222_A	235_M	0.606	1.00
23_L	41_G	0.605	1.00
298_L	302_I	0.603	1.00
299_I	302_I	0.600	1.00
249_A	301_S	0.600	1.00
294_I	298_L	0.598	1.00
105_V	252_L	0.597	1.00
241_L	244_N	0.597	1.00
209_N	213_T	0.597	1.00
202_F	247_A	0.597	1.00
129_S	132_D	0.596	1.00
287_L	291_F	0.595	1.00
112_A	202_F	0.593	1.00
308_I	312_L	0.591	1.00
184_S	191_I	0.590	1.00
241_L	245_I	0.590	1.00
126_N	132_D	0.590	1.00
137_I	141_I	0.589	1.00
109_A	113_F	0.589	1.00
121_S	125_F	0.588	1.00
263_E	270_G	0.588	1.00
55_A	87_P	0.587	1.00
202_F	248_F	0.587	1.00
103_F	268_T	0.587	1.00
143_A	200_S	0.586	1.00
44_A	48_E	0.586	1.00
295_A	299_I	0.586	1.00
228_D	232_I	0.585	1.00
159_S	163_G	0.585	1.00
279_L	287_L	0.584	1.00
8_I	71_I	0.583	1.00
23_L	26_V	0.581	1.00
194_L	262_V	0.578	1.00
9_T	12_F	0.575	1.00
184_S	187_Y	0.575	1.00
95_L	98_L	0.573	1.00
110_I	114_F	0.573	1.00
227_L	235_M	0.572	1.00
202_F	244_N	0.572	1.00
8_I	12_F	0.567	0.99
202_F	206_M	0.565	0.99
260_L	264_G	0.564	0.99
201_G	205_G	0.563	0.99
63_W	66_Q	0.561	0.99
124_G	132_D	0.554	0.99
195_M	198_S	0.551	0.99
156_M	159_S	0.551	0.99
253_G	297_M	0.550	0.99
275_F	278_A	0.550	0.99
210_M	240_S	0.550	0.99
65_V	72_Q	0.549	0.99
201_G	247_A	0.547	0.99
132_D	136_L	0.547	0.99
129_S	134_V	0.547	0.99
113_F	202_F	0.545	0.99
22_A	25_V	0.541	0.99
139_T	200_S	0.537	0.99
5_F	8_I	0.536	0.99
105_V	259_S	0.535	0.99
251_I	254_L	0.531	0.99
260_L	275_F	0.530	0.99
192_I	196_F	0.529	0.99
310_T	318_V	0.527	0.99
200_S	203_V	0.527	0.99
217_N	221_Y	0.526	0.99
23_L	44_A	0.526	0.99
123_A	207_R	0.525	0.99
172_K	185_R	0.524	0.99
9_T	71_I	0.522	0.99
201_G	251_I	0.521	0.99
11_N	16_R	0.521	0.99
213_T	239_N	0.520	0.99
127_R	130_R	0.520	0.99
104_L	268_T	0.518	0.99
216_D	221_Y	0.516	0.99
114_F	117_S	0.515	0.99
12_F	19_P	0.515	0.99
205_G	209_N	0.513	0.99
67_Y	70_Y	0.513	0.99
9_T	16_R	0.510	0.99
90_V	286_L	0.510	0.99
140_S	144_A	0.510	0.99
147_S	150_I	0.509	0.99
102_L	256_I	0.508	0.99
155_E	159_S	0.507	0.99
166_L	169_F	0.506	0.99
241_L	312_L	0.506	0.99
159_S	165_F	0.504	0.99
187_Y	268_T	0.503	0.99
285_P	288_Q	0.503	0.99
55_A	81_A	0.503	0.99
11_N	15_P	0.502	0.99
219_V	223_E	0.501	0.99
12_F	67_Y	0.501	0.99
198_S	251_I	0.500	0.99
77_L	81_A	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
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HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3tuiA	2	0.646	99.9	0.706	Contact Map
3rlfF	1	0.8323	99.8	0.723	Contact Map
4tquM	1	0.8106	99.8	0.734	Contact Map
2onkC	2	0.7298	99.8	0.735	Contact Map
4ymuD	2	0.6491	99.8	0.737	Contact Map
3d31C	2	0.7205	99.7	0.75	Contact Map
4tquN	1	0.7733	99.6	0.77	Contact Map
3rlfG	1	0.8478	99.5	0.786	Contact Map
4lz6A	1	0.264	13.4	0.962	Contact Map
2yevC	1	0.0994	12.7	0.963	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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