Q97UG3 - SULSO - GREMLIN Contacts

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Q97UG3 - Maltose ABC transporter, permease

UniProt:	Q97UG3	Sequences: MKVSKYYNRIRKALFNNKFILAGIVIILVDFAIGIVGAFWTPYPVSETFGISLPPSSAHILGTDEFGHDVLSVMMASTLTSLIVGISVGALIAIISTLIGLFGGYYGGKISGVIIDILTITALTIPGVILLVIIEAYFRAASSTINITLSYIIVVIGLAITSWAFGAKQIRAQVLSISKRDYIIASRLIGEKSWRIIFNQILPSILPLTVAQFLFGVLYGILSLITAEFWGVLPTNINNLGTMLFFISSNGAYLSNQWWWILGAIIPIMVLGAGLGILNIGIDEFIDPRLKEVKPKVIPEKIVILEEQEIIEVPMLGNYKNRK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	323 (252)
Sequences:	28523 (17848)
Seq/√Len:	1124.3

ECOLI - YEJE DPPC GSID DDPC SAPC NIKC OPPC YEJB DDPB NIKB SAPB GSIC DPPB OPPB
BACSU - DPPC APPC OPPC OPPB DPPB APPB
HALSA - Q9HMW2 Q9HMI1 Q9HMX0 Q9HMI2 Q9HMW3 Q9HMX1
SULSO - Q97UG3 Q97UH2 Q97YP2 Q97VK7 Q97YP9 Q97VF6 Q97VF8 Q97VK6 Q97UH1 Q97YP1 Q97YQ0 Q97UG4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
174_V	201_I	2.776	1.00
111_S	171_R	2.722	1.00
177_I	182_Y	2.460	1.00
187_R	193_S	2.458	1.00
195_R	199_N	2.441	1.00
191_E	195_R	2.395	1.00
80_T	229_F	2.391	1.00
87_S	155_V	2.381	1.00
99_I	114_I	2.340	1.00
177_I	180_R	2.336	1.00
49_F	55_P	2.298	1.00
194_W	198_F	2.265	1.00
192_K	195_R	2.260	1.00
91_L	159_A	2.237	1.00
181_D	184_I	2.098	1.00
73_V	243_M	2.043	1.00
183_I	201_I	2.041	1.00
49_F	52_S	2.009	1.00
183_I	196_I	1.993	1.00
214_L	279_N	1.949	1.00
57_S	60_I	1.943	1.00
101_L	174_V	1.940	1.00
102_F	106_Y	1.890	1.00
106_Y	193_S	1.879	1.00
106_Y	110_I	1.872	1.00
94_I	98_L	1.859	1.00
69_D	72_S	1.846	1.00
64_D	68_H	1.819	1.00
242_T	251_G	1.799	1.00
166_G	216_G	1.791	1.00
52_S	55_P	1.770	1.00
109_K	113_V	1.757	1.00
182_Y	204_S	1.755	1.00
34_G	78_T	1.704	1.00
105_Y	193_S	1.697	1.00
177_I	205_I	1.693	1.00
104_G	174_V	1.682	1.00
61_L	263_G	1.672	1.00
66_F	73_V	1.652	1.00
71_L	75_M	1.645	1.00
95_I	163_W	1.634	1.00
70_V	263_G	1.621	1.00
110_I	114_I	1.616	1.00
178_S	201_I	1.613	1.00
95_I	98_L	1.611	1.00
102_F	110_I	1.580	1.00
28_L	32_A	1.565	1.00
92_I	162_S	1.550	1.00
83_I	87_S	1.546	1.00
114_I	167_A	1.542	1.00
59_H	69_D	1.536	1.00
105_Y	197_I	1.529	1.00
155_V	159_A	1.524	1.00
93_A	213_F	1.494	1.00
76_A	79_L	1.486	1.00
173_Q	176_S	1.478	1.00
89_G	213_F	1.474	1.00
49_F	53_L	1.474	1.00
20_I	281_G	1.464	1.00
118_L	167_A	1.462	1.00
68_H	72_S	1.438	1.00
36_V	39_F	1.415	1.00
244_L	264_A	1.410	1.00
96_S	166_G	1.408	1.00
47_E	50_G	1.401	1.00
50_G	53_L	1.396	1.00
176_S	180_R	1.390	1.00
100_G	104_G	1.380	1.00
96_S	170_I	1.376	1.00
54_P	58_A	1.367	1.00
211_A	283_D	1.366	1.00
116_D	119_T	1.365	1.00
185_A	189_I	1.355	1.00
171_R	175_L	1.338	1.00
129_I	133_I	1.334	1.00
50_G	54_P	1.331	1.00
23_G	274_G	1.326	1.00
109_K	112_G	1.320	1.00
100_G	170_I	1.314	1.00
80_T	83_I	1.283	1.00
177_I	183_I	1.280	1.00
99_I	167_A	1.267	1.00
159_A	163_W	1.253	1.00
136_A	141_A	1.252	1.00
61_L	71_L	1.251	1.00
177_I	201_I	1.240	1.00
104_G	178_S	1.238	1.00
101_L	197_I	1.236	1.00
30_D	269_M	1.235	1.00
218_L	272_G	1.230	1.00
169_Q	212_Q	1.228	1.00
134_I	157_G	1.226	1.00
103_G	114_I	1.224	1.00
152_I	156_I	1.223	1.00
258_W	262_L	1.219	1.00
186_S	200_Q	1.217	1.00
21_L	25_V	1.216	1.00
32_A	36_V	1.211	1.00
283_D	287_D	1.210	1.00
282_I	285_F	1.204	1.00
56_S	61_L	1.192	1.00
74_M	267_P	1.189	1.00
210_V	286_I	1.188	1.00
53_L	56_S	1.168	1.00
68_H	73_V	1.160	1.00
107_G	178_S	1.135	1.00
122_A	164_A	1.129	1.00
18_K	21_L	1.129	1.00
174_V	205_I	1.129	1.00
186_S	196_I	1.122	1.00
250_N	254_L	1.119	1.00
101_L	202_L	1.119	1.00
84_V	224_L	1.102	1.00
68_H	76_A	1.100	1.00
281_G	285_F	1.087	1.00
157_G	161_T	1.082	1.00
186_S	191_E	1.079	1.00
61_L	74_M	1.073	1.00
170_I	209_T	1.070	1.00
264_A	268_I	1.068	1.00
47_E	55_P	1.067	1.00
97_T	170_I	1.053	1.00
112_G	116_D	1.050	1.00
184_I	187_R	1.048	1.00
98_L	101_L	1.047	1.00
170_I	174_V	1.037	1.00
125_I	130_L	1.036	1.00
195_R	198_F	1.035	1.00
30_D	271_L	1.029	1.00
173_Q	177_I	1.027	1.00
243_M	260_W	1.027	1.00
117_I	122_A	1.023	1.00
29_V	33_I	1.022	1.00
131_L	157_G	1.022	1.00
37_G	76_A	1.020	1.00
63_T	69_D	1.019	1.00
27_I	270_V	1.015	1.00
163_W	167_A	1.014	1.00
111_S	115_I	1.009	1.00
23_G	281_G	1.008	1.00
189_I	200_Q	1.007	1.00
70_V	260_W	1.004	1.00
70_V	243_M	1.001	1.00
108_G	111_S	0.995	1.00
25_V	28_L	0.993	1.00
115_I	167_A	0.988	1.00
41_T	72_S	0.987	1.00
152_I	155_V	0.985	1.00
83_I	151_Y	0.984	1.00
137_Y	141_A	0.979	1.00
187_R	196_I	0.978	1.00
77_S	243_M	0.977	1.00
25_V	29_V	0.972	1.00
22_A	25_V	0.969	1.00
27_I	274_G	0.968	1.00
79_L	83_I	0.965	1.00
88_V	159_A	0.962	1.00
107_G	179_K	0.962	1.00
73_V	260_W	0.960	1.00
186_S	189_I	0.958	1.00
263_G	266_I	0.952	1.00
113_V	117_I	0.947	1.00
72_S	76_A	0.943	1.00
274_G	278_L	0.942	1.00
207_P	283_D	0.937	1.00
26_I	274_G	0.929	1.00
49_F	54_P	0.926	1.00
110_I	113_V	0.924	1.00
111_S	175_L	0.923	1.00
23_G	273_A	0.916	1.00
170_I	205_I	0.915	1.00
88_V	158_L	0.915	1.00
56_S	59_H	0.913	1.00
88_V	92_I	0.913	1.00
217_V	275_L	0.909	1.00
35_I	39_F	0.899	1.00
100_G	174_V	0.894	1.00
259_W	263_G	0.893	1.00
191_E	196_I	0.893	1.00
51_I	55_P	0.887	1.00
83_I	86_I	0.885	1.00
51_I	54_P	0.883	1.00
74_M	263_G	0.882	1.00
193_S	196_I	0.872	1.00
23_G	277_I	0.872	1.00
112_G	115_I	0.868	1.00
275_L	279_N	0.866	1.00
56_S	60_I	0.861	1.00
24_I	28_L	0.858	1.00
43_Y	72_S	0.857	1.00
93_A	97_T	0.857	1.00
127_G	223_S	0.856	1.00
73_V	76_A	0.854	1.00
97_T	209_T	0.848	1.00
253_Y	256_N	0.847	1.00
24_I	278_L	0.844	1.00
205_I	208_L	0.843	1.00
108_G	112_G	0.840	1.00
26_I	270_V	0.839	1.00
212_Q	216_G	0.837	1.00
31_F	49_F	0.817	1.00
118_L	164_A	0.815	1.00
33_I	75_M	0.815	1.00
156_I	159_A	0.811	1.00
94_I	97_T	0.811	1.00
151_Y	155_V	0.810	1.00
210_V	279_N	0.807	1.00
75_M	79_L	0.807	1.00
172_A	175_L	0.803	1.00
63_T	67_G	0.799	1.00
243_M	264_A	0.798	1.00
59_H	63_T	0.796	1.00
193_S	197_I	0.795	1.00
127_G	131_L	0.794	1.00
43_Y	58_A	0.789	1.00
158_L	223_S	0.788	1.00
198_F	201_I	0.787	1.00
88_V	220_G	0.787	1.00
138_F	153_I	0.779	1.00
141_A	153_I	0.774	1.00
93_A	98_L	0.774	1.00
174_V	178_S	0.773	1.00
191_E	200_Q	0.769	1.00
180_R	184_I	0.767	1.00
20_I	24_I	0.766	1.00
39_F	258_W	0.766	1.00
93_A	166_G	0.765	1.00
72_S	75_M	0.765	1.00
98_L	102_F	0.761	1.00
20_I	277_I	0.760	1.00
50_G	59_H	0.759	1.00
104_G	175_L	0.758	1.00
48_T	55_P	0.756	1.00
78_T	271_L	0.755	1.00
81_S	85_G	0.755	1.00
99_I	163_W	0.754	1.00
184_I	188_L	0.752	1.00
87_S	229_F	0.752	1.00
262_L	266_I	0.746	1.00
42_P	72_S	0.742	1.00
48_T	52_S	0.740	1.00
177_I	204_S	0.739	1.00
60_I	71_L	0.739	1.00
48_T	51_I	0.738	1.00
153_I	156_I	0.737	1.00
103_G	111_S	0.735	1.00
64_D	257_Q	0.733	1.00
263_G	267_P	0.732	1.00
47_E	51_I	0.731	1.00
91_L	155_V	0.731	1.00
251_G	255_S	0.728	1.00
86_I	90_A	0.727	1.00
283_D	290_L	0.726	1.00
50_G	55_P	0.726	1.00
87_S	90_A	0.722	1.00
56_S	266_I	0.721	1.00
134_I	153_I	0.720	1.00
19_F	23_G	0.717	1.00
31_F	266_I	0.710	1.00
284_E	290_L	0.706	1.00
268_I	272_G	0.706	1.00
33_I	78_T	0.706	1.00
250_N	260_W	0.700	1.00
218_L	275_L	0.693	1.00
22_A	26_I	0.692	1.00
170_I	173_Q	0.691	1.00
33_I	37_G	0.689	1.00
36_V	40_W	0.686	1.00
43_Y	59_H	0.684	1.00
250_N	253_Y	0.680	1.00
173_Q	208_L	0.674	1.00
52_S	257_Q	0.673	1.00
194_W	197_I	0.673	1.00
95_I	159_A	0.671	1.00
92_I	159_A	0.669	1.00
123_L	164_A	0.669	1.00
42_P	71_L	0.667	1.00
173_Q	205_I	0.666	1.00
75_M	78_T	0.665	1.00
96_S	100_G	0.661	1.00
196_I	201_I	0.661	1.00
270_V	274_G	0.656	1.00
74_M	264_A	0.655	1.00
278_L	282_I	0.654	1.00
262_L	265_I	0.647	1.00
43_Y	46_S	0.644	1.00
32_A	49_F	0.644	1.00
60_I	69_D	0.642	1.00
224_L	228_E	0.642	1.00
113_V	116_D	0.635	1.00
222_L	225_I	0.629	1.00
166_G	170_I	0.628	1.00
95_I	99_I	0.627	1.00
162_S	165_F	0.627	1.00
21_L	24_I	0.627	1.00
161_T	164_A	0.627	1.00
105_Y	178_S	0.626	1.00
251_G	254_L	0.623	1.00
214_L	275_L	0.623	1.00
23_G	26_I	0.620	1.00
107_G	111_S	0.620	1.00
139_R	153_I	0.616	1.00
272_G	276_G	0.615	1.00
103_G	115_I	0.613	1.00
54_P	259_W	0.608	1.00
115_I	118_L	0.608	1.00
127_G	130_L	0.605	1.00
191_E	194_W	0.604	1.00
107_G	175_L	0.603	1.00
261_I	265_I	0.602	1.00
89_G	217_V	0.601	1.00
114_I	118_L	0.599	1.00
30_D	270_V	0.599	1.00
27_I	275_L	0.595	1.00
85_G	220_G	0.591	1.00
105_Y	198_F	0.591	1.00
90_A	94_I	0.589	1.00
166_G	212_Q	0.585	1.00
31_F	35_I	0.585	1.00
26_I	30_D	0.584	1.00
175_L	178_S	0.581	1.00
223_S	226_T	0.580	1.00
225_I	242_T	0.578	1.00
118_L	163_W	0.578	1.00
37_G	40_W	0.577	1.00
154_V	224_L	0.577	1.00
165_F	216_G	0.574	1.00
222_L	226_T	0.571	1.00
55_P	259_W	0.570	1.00
38_A	79_L	0.569	1.00
96_S	167_A	0.568	1.00
277_I	281_G	0.567	1.00
89_G	216_G	0.566	1.00
250_N	261_I	0.566	1.00
82_L	86_I	0.566	1.00
93_A	209_T	0.566	1.00
106_Y	197_I	0.566	1.00
43_Y	256_N	0.558	1.00
130_L	161_T	0.555	1.00
103_G	171_R	0.554	1.00
44_P	47_E	0.554	1.00
284_E	291_K	0.553	1.00
78_T	82_L	0.552	1.00
220_G	223_S	0.548	1.00
87_S	152_I	0.546	1.00
211_A	214_L	0.544	1.00
48_T	53_L	0.539	1.00
164_A	167_A	0.538	1.00
23_G	27_I	0.538	1.00
183_I	187_R	0.537	1.00
115_I	119_T	0.537	1.00
192_K	196_I	0.535	1.00
41_T	76_A	0.534	1.00
127_G	160_I	0.532	1.00
221_I	225_I	0.530	1.00
79_L	82_L	0.529	1.00
116_D	120_I	0.528	1.00
160_I	163_W	0.528	1.00
225_I	250_N	0.527	1.00
119_T	123_L	0.526	1.00
73_V	77_S	0.525	1.00
34_G	265_I	0.522	1.00
280_I	283_D	0.522	1.00
244_L	268_I	0.520	1.00
65_E	255_S	0.519	1.00
198_F	203_P	0.519	1.00
153_I	157_G	0.518	1.00
133_I	137_Y	0.518	1.00
27_I	278_L	0.517	1.00
156_I	160_I	0.515	1.00
169_Q	173_Q	0.515	1.00
38_A	76_A	0.512	1.00
89_G	93_A	0.512	1.00
259_W	262_L	0.506	1.00
104_G	111_S	0.504	1.00
162_S	216_G	0.501	1.00
122_A	163_W	0.500	1.00
101_L	170_I	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4tquM	1	0.808	99.9	0.646	Contact Map
3tuiA	2	0.6471	99.9	0.684	Contact Map
3rlfF	1	0.8111	99.9	0.688	Contact Map
3d31C	2	0.743	99.9	0.695	Contact Map
2onkC	2	0.7554	99.9	0.701	Contact Map
4tquN	1	0.8111	99.9	0.701	Contact Map
4ymuD	2	0.6656	99.8	0.71	Contact Map
3rlfG	1	0.8297	99.8	0.711	Contact Map
3j9pD	4	0.774	74.7	0.94	Contact Map
3rvyA	3	0.6316	73.5	0.94	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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