Q97UF2 - SULSO - GREMLIN Contacts

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Q97UF2 - Arabinose ABC transporter, ATP-binding protein

UniProt:	Q97UF2	Sequences: MTTIRVENLSKIFKKGKTEVKAVDNVSITIDSGMAFGVLGPSGHGKTTFLRLIAGLEEPTSGYIYFDNEAVSSPRRVMMSPEKRGIAMVFQNWALYPNMTVFDNIAFPLKLAKVPKDKIENKVKEVSEELGLSGVLNRYPKELSGGQMQRTAIARALVKDPKVLLLDEPFSNLDAQIRESARALVRKIQRERKLTTLIVSHDPADIFAIANKAGVIVNGKFAQIGTPTEIYEYPATDLIARLTGEINLIQAKIIENNAIIANLKVPLNNMELKGQSNIVIGLRPDDLTLSDTLLDKYIDMGIVKVKLVSYGAGIFKIVVSPITDENIDIIVDAEEPLETGIETHLLAKPNKVKIFDLNGSNLITSKTQIIK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	371 (310)
Sequences:	17490 (12857)
Seq/√Len:	730.2

ECOLI - MALK YCJV UGPC CYSA FBPC POTA POTG PROV METN YDCT MODC DPPD SAPD RBSA DPPF OPPD YEHX YADG OPPF DDPD MACB ARAG DDPF GSIA YHES YECC MLAF UUP FEPC CYDC TAUB MDLB MDLA NIKE HISP LPTB SAPF MSBA CYDD YTFR YOJI LSRA FHUC FECE SSUB GLNQ PHNC YHDZ GLTL ETTA SUFC MODF THIQ LIVG PSTB YPHE FTSE ZNUC ARTP PHNK XYLG ALSA LOLD LIVF BTUD NIKD YBBA MGLA FETA YEJF CCMA PHNL YDDA YBHF YNJD YBIT YHIH
BACSU - MSMX YURJ OPUCA OPUBA YVRA OPUAA METN OPPD TAGH DPPD YFIL YKFD APPD YHCH APPF YDBJ YFMM YXLF YHAQ YKPA YCBN YVFR OPPF RBSA FHUC YFMF YHEH ECFA1 YTRB SUNT YDIF YUSV BCEA YFIC YTLC ECSA YFIB YFMR TCYN SKFE YGAD YVCR YCLP YKNV BMRA YKNU YWJA YHEI CYDD YLMA CYDC NATA ECFA2 ALBC MNTB TCYC YXDL YXEO SUFC FTSE YKOD GLNQ ARTM PSTB1 YVRO YJKB YKNY SSUB YCLH ZNUC PSTB2 YTHP EXPZ YYBJ YHCG YUFO YTRE YYDI
HALSA - Q9HHQ5 Q9HMX3 Q9HR06 Q9HMW0 Q9HNZ9 Q9HMT3 BTUDA Q9HMX2 Q9HMU8 Q9HRJ6 Q9HMG1 PHNC PSTB2 Q9HSQ7 Q9HRH8 Q9HHM2 Q9HMG6 Q9HRV7 Q9HNY3 Y2317 Q9HRZ9 Y1631 PSTB1 Q9HHR7 Q9HR96 Q9HT03 Q9HS04 Q9HR21 Q9HQA8 Q9HMC1 Q9HMW1
SULSO - Q97UF2 Q97YY4 Q97UY8 Q97ZC0 Q7LX64 Q97VC1 Q97UH3 Q97YP3 Q97VF5 Q97VH6 Q97VK8 Q97UJ9 Q97VK9 Q97VF4 Q97UD4 Q97YP7 Q97YK2 Q97X18 Q97YP8 Q97Z03 Q97YQ7 Q97U54 Y1893 Y2030 Q980W0 Q97V01 Q97UH4 PSTB Q97W42 Q7LY07 Q97V00 Q7LXM4 Q97VY4 Q97VM2 Q97Z56 Q7LX80 Q97UG5 Q97YP4 Q97Z96 Q97UC2 Q980K5 Q97ZU0 Q980E6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
225_G	229_E	4.205	1.00
63_Y	70_A	4.032	1.00
37_G	210_A	3.863	1.00
5_R	29_T	3.642	1.00
8_N	25_N	3.637	1.00
34_M	212_K	3.510	1.00
7_E	63_Y	3.483	1.00
128_E	133_S	3.302	1.00
21_K	24_D	3.132	1.00
120_E	124_K	2.948	1.00
222_A	236_T	2.731	1.00
24_D	220_K	2.699	1.00
226_T	229_E	2.591	1.00
36_F	214_G	2.477	1.00
7_E	65_Y	2.472	1.00
10_S	21_K	2.457	1.00
115_P	118_K	2.419	1.00
102_F	106_A	2.397	1.00
5_R	65_Y	2.390	1.00
8_N	27_S	2.378	1.00
102_F	120_E	2.343	1.00
6_V	9_L	2.336	1.00
31_D	34_M	2.315	1.00
10_S	61_S	2.306	1.00
102_F	137_N	2.298	1.00
135_V	138_R	2.293	1.00
12_I	21_K	2.292	1.00
122_K	160_D	2.223	1.00
10_S	25_N	2.209	1.00
85_G	162_K	2.193	1.00
11_K	52_L	2.191	1.00
102_F	124_K	2.120	1.00
187_K	191_E	2.113	1.00
131_G	180_S	2.035	1.00
65_Y	70_A	2.023	1.00
67_D	162_K	2.001	1.00
4_I	163_V	1.974	1.00
9_L	59_P	1.958	1.00
52_L	59_P	1.908	1.00
14_K	19_E	1.855	1.00
214_G	221_F	1.847	1.00
127_S	136_L	1.836	1.00
23_V	52_L	1.830	1.00
121_N	125_E	1.812	1.00
50_L	199_V	1.810	1.00
214_G	224_I	1.800	1.00
237_D	279_V	1.794	1.00
217_V	222_A	1.786	1.00
53_I	197_L	1.783	1.00
11_K	60_T	1.664	1.00
118_K	121_N	1.649	1.00
122_K	125_E	1.648	1.00
51_R	57_E	1.605	1.00
207_F	228_T	1.601	1.00
126_V	158_V	1.589	1.00
11_K	57_E	1.582	1.00
52_L	64_I	1.568	1.00
117_D	121_N	1.551	1.00
106_A	123_V	1.503	1.00
246_I	249_I	1.503	1.00
70_A	73_S	1.500	1.00
3_T	29_T	1.489	1.00
166_L	196_T	1.488	1.00
265_V	268_N	1.483	1.00
303_V	319_V	1.476	1.00
71_V	79_M	1.475	1.00
237_D	241_R	1.460	1.00
6_V	28_I	1.454	1.00
125_E	128_E	1.452	1.00
228_T	232_E	1.448	1.00
26_V	49_F	1.447	1.00
114_V	118_K	1.430	1.00
12_I	60_T	1.425	1.00
102_F	123_V	1.418	1.00
258_A	261_A	1.401	1.00
237_D	248_L	1.400	1.00
248_L	279_V	1.371	1.00
69_E	162_K	1.364	1.00
36_F	224_I	1.359	1.00
66_F	71_V	1.344	1.00
252_K	277_N	1.339	1.00
114_V	119_I	1.334	1.00
262_N	265_V	1.334	1.00
6_V	53_I	1.327	1.00
130_L	154_A	1.315	1.00
124_K	128_E	1.313	1.00
10_S	24_D	1.307	1.00
99_M	107_F	1.306	1.00
30_I	36_F	1.305	1.00
6_V	49_F	1.302	1.00
59_P	64_I	1.301	1.00
106_A	119_I	1.300	1.00
118_K	122_K	1.299	1.00
79_M	83_K	1.280	1.00
36_F	212_K	1.276	1.00
309_S	312_A	1.267	1.00
241_R	248_L	1.266	1.00
3_T	32_S	1.259	1.00
273_K	276_S	1.239	1.00
100_T	103_D	1.238	1.00
50_L	165_L	1.237	1.00
229_E	233_Y	1.230	1.00
100_T	139_Y	1.220	1.00
306_K	320_S	1.220	1.00
28_I	214_G	1.207	1.00
103_D	106_A	1.206	1.00
125_E	160_D	1.203	1.00
69_E	79_M	1.202	1.00
23_V	49_F	1.190	1.00
215_V	230_I	1.186	1.00
255_E	258_A	1.185	1.00
189_Q	194_L	1.176	1.00
7_E	27_S	1.168	1.00
250_Q	277_N	1.159	1.00
119_I	123_V	1.155	1.00
301_G	304_K	1.154	1.00
189_Q	196_T	1.152	1.00
124_K	136_L	1.141	1.00
3_T	31_D	1.141	1.00
12_I	61_S	1.135	1.00
310_Y	313_G	1.125	1.00
87_A	156_A	1.121	1.00
186_R	209_I	1.117	1.00
31_D	212_K	1.110	1.00
309_S	313_G	1.109	1.00
103_D	110_K	1.101	1.00
23_V	26_V	1.100	1.00
246_I	250_Q	1.095	1.00
63_Y	72_S	1.092	1.00
125_E	191_E	1.092	1.00
304_K	307_L	1.089	1.00
246_I	281_G	1.087	1.00
125_E	129_E	1.069	1.00
80_S	83_K	1.068	1.00
49_F	216_I	1.064	1.00
265_V	269_N	1.062	1.00
12_I	19_E	1.061	1.00
247_N	250_Q	1.057	1.00
110_K	116_K	1.055	1.00
101_V	143_L	1.053	1.00
263_L	266_P	1.051	1.00
212_K	224_I	1.045	1.00
65_Y	68_N	1.043	1.00
12_I	22_A	1.032	1.00
251_A	278_I	1.029	1.00
312_A	315_F	1.010	1.00
9_L	52_L	1.009	1.00
34_M	211_N	1.008	1.00
290_S	294_L	1.004	1.00
28_I	224_I	1.003	1.00
44_H	216_I	0.999	1.00
263_L	268_N	0.996	1.00
98_N	141_K	0.993	1.00
307_L	310_Y	0.992	1.00
33_G	193_K	0.991	1.00
186_R	190_R	0.984	1.00
266_P	269_N	0.983	1.00
116_K	120_E	0.978	1.00
200_S	206_I	0.978	1.00
315_F	318_V	0.974	1.00
272_L	276_S	0.972	1.00
124_K	133_S	0.962	1.00
303_V	306_K	0.956	1.00
96_Y	108_P	0.956	1.00
290_S	293_L	0.950	1.00
306_K	309_S	0.948	1.00
59_P	72_S	0.942	1.00
108_P	159_K	0.942	1.00
99_M	103_D	0.941	1.00
13_F	22_A	0.939	1.00
32_S	67_D	0.938	1.00
264_K	267_L	0.937	1.00
105_I	154_A	0.936	1.00
263_L	267_L	0.932	1.00
3_T	67_D	0.928	1.00
258_A	262_N	0.928	1.00
170_F	185_V	0.918	1.00
5_R	68_N	0.914	1.00
250_Q	279_V	0.914	1.00
306_K	310_Y	0.908	1.00
129_E	191_E	0.905	1.00
39_L	215_V	0.904	1.00
51_R	56_L	0.904	1.00
6_V	64_I	0.903	1.00
221_F	224_I	0.901	1.00
302_I	305_V	0.892	1.00
72_S	79_M	0.890	1.00
247_N	251_A	0.886	1.00
9_L	64_I	0.885	1.00
139_Y	142_E	0.885	1.00
105_I	158_V	0.880	1.00
104_N	155_R	0.880	1.00
30_I	195_T	0.879	1.00
96_Y	99_M	0.879	1.00
35_A	196_T	0.878	1.00
160_D	194_L	0.875	1.00
112_A	159_K	0.874	1.00
54_A	165_L	0.873	1.00
227_P	231_Y	0.872	1.00
8_N	61_S	0.871	1.00
215_V	239_I	0.868	1.00
160_D	191_E	0.864	1.00
315_F	320_S	0.864	1.00
313_G	316_K	0.863	1.00
87_A	161_P	0.859	1.00
32_S	162_K	0.857	1.00
107_F	111_L	0.853	1.00
309_S	314_I	0.852	1.00
105_I	108_P	0.850	1.00
33_G	195_T	0.849	1.00
291_D	294_L	0.846	1.00
246_I	251_A	0.843	1.00
106_A	110_K	0.839	1.00
95_L	140_P	0.836	1.00
35_A	209_I	0.831	1.00
305_V	312_A	0.830	1.00
231_Y	285_D	0.829	1.00
312_A	319_V	0.827	1.00
313_G	318_V	0.823	1.00
127_S	132_L	0.823	1.00
314_I	318_V	0.822	1.00
38_V	214_G	0.820	1.00
277_N	281_G	0.820	1.00
311_G	314_I	0.819	1.00
297_Y	300_M	0.818	1.00
264_K	268_N	0.816	1.00
64_I	71_V	0.813	1.00
178_R	202_D	0.811	1.00
217_V	238_L	0.808	1.00
256_N	261_A	0.807	1.00
312_A	317_I	0.799	1.00
308_V	311_G	0.794	1.00
186_R	208_A	0.791	1.00
262_N	267_L	0.791	1.00
37_G	206_I	0.790	1.00
116_K	119_I	0.788	1.00
179_E	183_A	0.784	1.00
275_Q	278_I	0.782	1.00
272_L	275_Q	0.777	1.00
126_V	157_L	0.774	1.00
308_V	317_I	0.772	1.00
102_F	136_L	0.771	1.00
120_E	123_V	0.769	1.00
217_V	220_K	0.768	1.00
52_L	57_E	0.768	1.00
304_K	320_S	0.761	1.00
79_M	82_E	0.758	1.00
7_E	29_T	0.758	1.00
184_L	187_K	0.750	1.00
127_S	133_S	0.748	1.00
256_N	259_I	0.747	1.00
313_G	320_S	0.747	1.00
315_F	319_V	0.747	1.00
35_A	189_Q	0.742	1.00
309_S	317_I	0.740	1.00
260_I	263_L	0.740	1.00
291_D	295_D	0.738	1.00
114_V	117_D	0.733	1.00
47_T	51_R	0.733	1.00
303_V	312_A	0.729	1.00
168_E	201_H	0.729	1.00
302_I	309_S	0.728	1.00
308_V	312_A	0.728	1.00
14_K	21_K	0.719	1.00
305_V	308_V	0.719	1.00
162_K	194_L	0.716	1.00
261_A	265_V	0.716	1.00
52_L	60_T	0.711	1.00
298_I	301_G	0.708	1.00
311_G	316_K	0.707	1.00
38_V	216_I	0.707	1.00
282_L	287_L	0.706	1.00
66_F	86_I	0.706	1.00
305_V	309_S	0.705	1.00
41_P	44_H	0.704	1.00
293_L	297_Y	0.702	1.00
126_V	130_L	0.702	1.00
312_A	316_K	0.701	1.00
153_I	166_L	0.699	1.00
138_R	142_E	0.696	1.00
259_I	264_K	0.695	1.00
271_E	274_G	0.695	1.00
38_V	49_F	0.694	1.00
164_L	194_L	0.694	1.00
282_L	285_D	0.689	1.00
281_G	284_P	0.688	1.00
161_P	164_L	0.685	1.00
110_K	119_I	0.684	1.00
175_A	179_E	0.683	1.00
316_K	320_S	0.683	1.00
176_Q	241_R	0.681	1.00
306_K	313_G	0.680	1.00
284_P	288_T	0.679	1.00
38_V	197_L	0.678	1.00
305_V	310_Y	0.677	1.00
44_H	49_F	0.676	1.00
304_K	309_S	0.676	1.00
175_A	182_R	0.676	1.00
257_N	260_I	0.675	1.00
102_F	119_I	0.672	1.00
126_V	129_E	0.672	1.00
86_I	163_V	0.671	1.00
309_S	318_V	0.668	1.00
26_V	221_F	0.663	1.00
257_N	261_A	0.662	1.00
301_G	309_S	0.662	1.00
311_G	315_F	0.659	1.00
181_A	184_L	0.659	1.00
179_E	245_E	0.657	1.00
308_V	316_K	0.657	1.00
101_V	151_T	0.657	1.00
285_D	289_L	0.655	1.00
284_P	290_S	0.654	1.00
232_E	310_Y	0.652	1.00
170_F	198_I	0.652	1.00
313_G	319_V	0.652	1.00
270_M	273_K	0.651	1.00
300_M	303_V	0.648	1.00
198_I	210_A	0.648	1.00
140_P	151_T	0.646	1.00
259_I	262_N	0.646	1.00
204_A	208_A	0.642	1.00
279_V	283_R	0.640	1.00
95_L	104_N	0.640	1.00
298_I	302_I	0.636	1.00
199_V	203_P	0.633	1.00
12_I	24_D	0.633	1.00
316_K	319_V	0.630	1.00
254_I	259_I	0.626	1.00
225_G	230_I	0.626	1.00
108_P	155_R	0.624	1.00
3_T	68_N	0.623	1.00
313_G	321_P	0.622	1.00
188_I	194_L	0.621	1.00
309_S	316_K	0.619	1.00
290_S	295_D	0.617	1.00
124_K	132_L	0.616	1.00
93_W	172_N	0.615	1.00
157_L	192_R	0.615	1.00
85_G	112_A	0.614	1.00
312_A	318_V	0.614	1.00
264_K	269_N	0.612	1.00
274_G	277_N	0.612	1.00
262_N	266_P	0.610	1.00
318_V	321_P	0.610	1.00
254_I	257_N	0.609	1.00
100_T	137_N	0.608	1.00
34_M	224_I	0.606	1.00
54_A	88_M	0.605	1.00
87_A	159_K	0.604	1.00
262_N	268_N	0.604	1.00
87_A	196_T	0.603	1.00
91_Q	172_N	0.601	1.00
312_A	321_P	0.599	1.00
293_L	296_K	0.599	1.00
248_L	251_A	0.598	1.00
273_K	277_N	0.597	1.00
258_A	263_L	0.597	1.00
105_I	127_S	0.597	1.00
163_V	195_T	0.597	1.00
294_L	297_Y	0.596	1.00
13_F	57_E	0.595	1.00
212_K	223_Q	0.595	1.00
234_P	239_I	0.594	1.00
206_I	210_A	0.594	1.00
165_L	197_L	0.594	1.00
301_G	305_V	0.593	1.00
310_Y	315_F	0.592	1.00
314_I	317_I	0.590	1.00
253_I	256_N	0.586	1.00
259_I	263_L	0.585	1.00
6_V	26_V	0.585	1.00
312_A	320_S	0.585	1.00
123_V	126_V	0.584	1.00
24_D	218_N	0.582	1.00
129_E	157_L	0.581	1.00
314_I	319_V	0.580	1.00
131_G	134_G	0.579	1.00
21_K	25_N	0.577	1.00
253_I	278_I	0.577	1.00
260_I	264_K	0.575	1.00
185_V	196_T	0.575	1.00
104_N	140_P	0.574	1.00
166_L	198_I	0.574	1.00
298_I	306_K	0.573	1.00
270_M	274_G	0.571	1.00
268_N	271_E	0.570	1.00
227_P	230_I	0.570	1.00
255_E	259_I	0.569	1.00
216_I	221_F	0.569	1.00
239_I	243_T	0.567	1.00
85_G	159_K	0.566	1.00
314_I	320_S	0.564	1.00
278_I	281_G	0.564	1.00
307_L	313_G	0.563	1.00
310_Y	314_I	0.562	1.00
129_E	187_K	0.561	1.00
153_I	209_I	0.560	1.00
171_S	175_A	0.560	1.00
179_E	204_A	0.557	1.00
164_L	196_T	0.556	1.00
11_K	48_T	0.555	1.00
114_V	122_K	0.552	1.00
303_V	321_P	0.551	1.00
115_P	119_I	0.550	1.00
254_I	274_G	0.549	1.00
258_A	265_V	0.548	1.00
189_Q	211_N	0.546	1.00
25_N	61_S	0.545	1.00
172_N	182_R	0.545	1.00
178_R	205_D	0.545	1.00
284_P	291_D	0.545	1.00
249_I	253_I	0.544	1.00
267_L	270_M	0.541	1.00
96_Y	159_K	0.540	1.00
308_V	315_F	0.539	1.00
316_K	321_P	0.539	1.00
238_L	242_L	0.538	1.00
249_I	252_K	0.537	1.00
30_I	197_L	0.537	1.00
229_E	232_E	0.535	1.00
35_A	198_I	0.534	1.00
289_L	292_T	0.534	1.00
180_S	184_L	0.533	1.00
267_L	271_E	0.532	1.00
255_E	274_G	0.531	1.00
183_A	187_K	0.531	1.00
303_V	310_Y	0.530	1.00
182_R	208_A	0.529	1.00
231_Y	234_P	0.529	1.00
292_T	295_D	0.526	1.00
247_N	255_E	0.525	1.00
71_V	86_I	0.525	1.00
289_L	293_L	0.524	1.00
134_G	147_Q	0.524	1.00
304_K	312_A	0.524	1.00
240_A	244_G	0.523	1.00
132_L	135_V	0.523	1.00
280_I	284_P	0.522	1.00
271_E	275_Q	0.522	1.00
199_V	202_D	0.521	1.00
284_P	287_L	0.521	1.00
310_Y	319_V	0.520	1.00
263_L	269_N	0.519	1.00
304_K	311_G	0.519	1.00
311_G	320_S	0.516	1.00
99_M	104_N	0.515	1.00
308_V	313_G	0.515	1.00
189_Q	192_R	0.515	1.00
200_S	205_D	0.515	1.00
301_G	312_A	0.512	1.00
147_Q	177_I	0.510	1.00
311_G	318_V	0.510	1.00
273_K	278_I	0.510	1.00
239_I	242_L	0.509	1.00
302_I	306_K	0.508	1.00
102_F	105_I	0.508	1.00
188_I	192_R	0.508	1.00
13_F	48_T	0.507	1.00
206_I	213_A	0.506	1.00
310_Y	316_K	0.505	1.00
89_V	156_A	0.505	1.00
299_D	302_I	0.503	0.99
256_N	260_I	0.503	0.99
238_L	241_R	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1v43A	2	0.9218	100	0.198	Contact Map
1oxxK	1	0.9407	100	0.2	Contact Map
2it1A	1	0.9542	100	0.203	Contact Map
2yyzA	1	0.9434	100	0.205	Contact Map
1g291	4	0.965	100	0.207	Contact Map
3rlfA	2	0.9596	100	0.22	Contact Map
3fvqA	2	0.9407	100	0.225	Contact Map
1z47A	2	0.9218	100	0.235	Contact Map
3d31A	2	0.9111	100	0.244	Contact Map
3tuiC	2	0.9137	100	0.245	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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