Q97UF1 - SULSO - GREMLIN Contacts

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Q97UF1 - Uncharacterized protein

UniProt:	Q97UF1	Sequences: MIEELFDQMSKGNLLLIDMTYDMFNGMQTYIGDPPFKHEYFRKGNKYGEVTLSTVYMGLHSGTHIDLPLHFVPNGESVEKFNIIQFIGYGNVLDLSYKKLGEPISSNDLKKFDDRIKENYVVMLYTGFSATRGKEDFLYNWPYLDSNGADYLVSKKIRAVGIESMSIAGWAGKEYPPRTNWDEVVYVHHKLLSNDIIILESVNNMKKVLEECKNGEALFFYAPLKIVGAEGGPTRLFAICEKR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	243 (210)
Sequences:	3800 (2684)
Seq/√Len:	185.2

HALSA - Q9HRE1
SULSO - Q97UF1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
24_F	227_V	3.338	1.00
222_A	237_F	3.323	1.00
69_L	77_S	2.706	1.00
88_G	121_V	2.686	1.00
39_E	54_T	2.643	1.00
76_E	195_D	2.556	1.00
118_E	156_K	2.449	1.00
22_D	227_V	2.392	1.00
106_S	110_K	2.319	1.00
90_G	217_A	2.301	1.00
150_D	190_K	2.298	1.00
123_M	161_G	2.208	1.00
22_D	225_K	2.203	1.00
161_G	202_V	2.194	1.00
151_Y	155_K	2.178	1.00
106_S	147_N	2.144	1.00
224_L	232_G	2.130	1.00
18_D	235_R	2.115	1.00
121_V	159_A	2.109	1.00
96_S	125_Y	1.979	1.00
106_S	148_G	1.979	1.00
77_S	80_K	1.964	1.00
94_D	125_Y	1.945	1.00
122_V	152_L	1.916	1.00
18_D	225_K	1.908	1.00
105_S	108_D	1.890	1.00
146_S	150_D	1.872	1.00
66_D	188_H	1.835	1.00
106_S	151_Y	1.832	1.00
37_K	56_Y	1.827	1.00
19_M	238_A	1.805	1.00
89_Y	216_E	1.771	1.00
110_K	155_K	1.711	1.00
105_S	145_D	1.684	1.00
24_F	27_M	1.606	1.00
167_I	198_I	1.592	1.00
107_N	110_K	1.579	1.00
224_L	233_P	1.571	1.00
82_N	85_Q	1.562	1.00
150_D	154_S	1.531	1.00
107_N	111_K	1.528	1.00
117_K	120_Y	1.511	1.00
123_M	219_F	1.507	1.00
110_K	151_Y	1.483	1.00
15_L	207_K	1.476	1.00
87_I	220_F	1.472	1.00
130_A	206_K	1.471	1.00
113_D	155_K	1.458	1.00
145_D	148_G	1.441	1.00
220_F	239_I	1.420	1.00
131_T	136_D	1.415	1.00
199_L	202_V	1.413	1.00
129_S	206_K	1.411	1.00
60_H	64_H	1.403	1.00
65_I	86_F	1.391	1.00
107_N	147_N	1.381	1.00
93_L	112_F	1.379	1.00
93_L	122_V	1.361	1.00
45_N	73_P	1.349	1.00
160_V	191_L	1.348	1.00
51_T	69_L	1.341	1.00
203_N	206_K	1.336	1.00
159_A	199_L	1.336	1.00
60_H	231_G	1.335	1.00
65_I	159_A	1.332	1.00
219_F	236_L	1.326	1.00
51_T	230_E	1.326	1.00
78_V	81_F	1.323	1.00
153_V	190_K	1.294	1.00
93_L	113_D	1.290	1.00
199_L	221_Y	1.285	1.00
109_L	124_L	1.280	1.00
21_Y	203_N	1.276	1.00
109_L	148_G	1.268	1.00
98_K	108_D	1.267	1.00
217_A	238_A	1.266	1.00
125_Y	206_K	1.262	1.00
33_D	52_L	1.244	1.00
220_F	237_F	1.241	1.00
23_M	36_F	1.239	1.00
92_V	217_A	1.230	1.00
203_N	207_K	1.223	1.00
128_F	142_P	1.223	1.00
25_N	37_K	1.207	1.00
121_V	219_F	1.202	1.00
87_I	218_L	1.196	1.00
104_I	126_T	1.192	1.00
202_V	236_L	1.189	1.00
191_L	196_I	1.175	1.00
160_V	167_I	1.149	1.00
39_E	56_Y	1.146	1.00
202_V	219_F	1.135	1.00
144_L	167_I	1.132	1.00
16_L	83_I	1.129	1.00
123_M	205_M	1.101	1.00
90_G	219_F	1.086	1.00
53_S	230_E	1.083	1.00
110_K	114_D	1.077	1.00
66_D	70_H	1.071	1.00
126_T	162_I	1.070	1.00
38_H	53_S	1.067	1.00
65_I	199_L	1.053	1.00
221_Y	234_T	1.043	1.00
53_S	59_L	1.037	1.00
95_L	108_D	1.036	1.00
89_Y	120_Y	1.035	1.00
199_L	219_F	1.029	1.00
109_L	151_Y	1.008	0.99
19_M	236_L	1.006	0.99
129_S	203_N	1.004	0.99
87_I	237_F	1.003	0.99
95_L	124_L	1.000	0.99
79_E	228_G	0.995	0.99
57_M	233_P	0.994	0.99
208_V	238_A	0.992	0.99
113_D	116_I	0.989	0.99
76_E	85_Q	0.989	0.99
36_F	226_I	0.988	0.99
67_L	231_G	0.985	0.99
92_V	125_Y	0.983	0.99
149_A	190_K	0.978	0.99
21_Y	132_R	0.975	0.99
70_H	188_H	0.973	0.99
209_L	216_E	0.973	0.99
146_S	187_V	0.966	0.99
116_I	122_V	0.956	0.99
16_L	239_I	0.955	0.99
124_L	144_L	0.950	0.99
90_G	123_M	0.945	0.99
191_L	198_I	0.945	0.99
162_I	167_I	0.944	0.99
168_A	187_V	0.943	0.99
151_Y	154_S	0.942	0.99
159_A	219_F	0.936	0.99
76_E	80_K	0.934	0.99
99_K	102_E	0.921	0.99
65_I	221_Y	0.921	0.99
59_L	229_A	0.912	0.99
218_L	239_I	0.908	0.99
60_H	188_H	0.891	0.99
85_Q	195_D	0.886	0.99
91_N	116_I	0.885	0.99
20_T	236_L	0.885	0.99
161_G	199_L	0.875	0.99
125_Y	129_S	0.873	0.98
48_G	73_P	0.869	0.98
21_Y	63_T	0.866	0.98
88_G	158_R	0.862	0.98
161_G	205_M	0.857	0.98
81_F	86_F	0.854	0.98
76_E	82_N	0.854	0.98
149_A	187_V	0.847	0.98
65_I	78_V	0.843	0.98
90_G	208_V	0.836	0.98
16_L	87_I	0.825	0.98
65_I	234_T	0.814	0.98
111_K	114_D	0.814	0.98
98_K	112_F	0.813	0.98
160_V	198_I	0.809	0.98
153_V	196_I	0.807	0.97
106_S	109_L	0.804	0.97
168_A	201_S	0.803	0.97
34_P	54_T	0.803	0.97
210_E	215_G	0.801	0.97
119_N	158_R	0.797	0.97
187_V	190_K	0.795	0.97
55_V	226_I	0.795	0.97
103_P	143_Y	0.794	0.97
40_Y	51_T	0.786	0.97
57_M	61_S	0.779	0.97
44_G	51_T	0.774	0.97
95_L	98_K	0.773	0.97
141_W	170_W	0.763	0.96
59_L	230_E	0.761	0.96
60_H	199_L	0.758	0.96
71_F	185_V	0.755	0.96
154_S	194_N	0.751	0.96
127_G	130_A	0.750	0.96
23_M	224_L	0.749	0.96
99_K	108_D	0.746	0.96
147_N	150_D	0.745	0.96
125_Y	209_L	0.744	0.96
137_F	201_S	0.743	0.96
165_M	201_S	0.743	0.96
40_Y	43_K	0.734	0.96
89_Y	218_L	0.732	0.96
88_G	218_L	0.731	0.96
117_K	155_K	0.723	0.95
116_I	155_K	0.722	0.95
87_I	222_A	0.717	0.95
40_Y	53_S	0.717	0.95
105_S	148_G	0.716	0.95
168_A	185_V	0.714	0.95
121_V	158_R	0.708	0.95
102_E	108_D	0.705	0.95
91_N	216_E	0.700	0.94
92_V	123_M	0.699	0.94
36_F	57_M	0.696	0.94
143_Y	151_Y	0.693	0.94
144_L	148_G	0.690	0.94
31_I	34_P	0.688	0.94
34_P	37_K	0.684	0.94
116_I	120_Y	0.684	0.94
52_L	58_G	0.681	0.94
141_W	166_S	0.679	0.93
153_V	194_N	0.677	0.93
105_S	147_N	0.674	0.93
141_W	165_M	0.669	0.93
91_N	120_Y	0.668	0.93
85_Q	158_R	0.667	0.93
33_D	58_G	0.666	0.93
23_M	57_M	0.664	0.93
116_I	119_N	0.664	0.93
92_V	210_E	0.661	0.92
89_Y	117_K	0.660	0.92
94_D	210_E	0.660	0.92
223_P	232_G	0.657	0.92
55_V	59_L	0.657	0.92
81_F	85_Q	0.656	0.92
54_T	58_G	0.656	0.92
81_F	197_I	0.653	0.92
66_D	200_E	0.650	0.92
59_L	231_G	0.650	0.92
88_G	119_N	0.649	0.92
69_L	74_N	0.648	0.92
79_E	227_V	0.646	0.92
44_G	47_Y	0.642	0.91
51_T	73_P	0.642	0.91
152_L	157_I	0.641	0.91
21_Y	129_S	0.634	0.91
150_D	193_S	0.632	0.91
34_P	58_G	0.631	0.91
42_R	50_V	0.630	0.91
98_K	102_E	0.629	0.91
64_H	230_E	0.627	0.90
60_H	230_E	0.626	0.90
20_T	235_R	0.626	0.90
95_L	104_I	0.626	0.90
144_L	160_V	0.626	0.90
63_T	205_M	0.625	0.90
17_I	207_K	0.623	0.90
23_M	61_S	0.622	0.90
133_G	137_F	0.619	0.90
103_P	145_D	0.617	0.90
83_I	237_F	0.617	0.90
149_A	191_L	0.613	0.89
23_M	27_M	0.609	0.89
146_S	190_K	0.609	0.89
141_W	164_S	0.608	0.89
66_D	231_G	0.606	0.89
199_L	234_T	0.604	0.89
21_Y	201_S	0.603	0.89
17_I	209_L	0.602	0.89
168_A	198_I	0.602	0.89
128_F	164_S	0.602	0.89
188_H	223_P	0.601	0.88
106_S	145_D	0.600	0.88
131_T	134_K	0.600	0.88
158_R	197_I	0.598	0.88
96_S	130_A	0.596	0.88
83_I	222_A	0.596	0.88
135_E	138_L	0.588	0.87
97_Y	102_E	0.583	0.87
115_R	155_K	0.580	0.87
110_K	154_S	0.580	0.87
168_A	186_Y	0.578	0.86
57_M	226_I	0.575	0.86
27_M	165_M	0.574	0.86
118_E	155_K	0.570	0.86
122_V	156_K	0.569	0.86
30_Y	33_D	0.569	0.86
37_K	54_T	0.567	0.85
225_K	235_R	0.564	0.85
33_D	36_F	0.563	0.85
143_Y	229_A	0.558	0.85
122_V	157_I	0.556	0.84
34_P	56_Y	0.555	0.84
167_I	191_L	0.554	0.84
124_L	160_V	0.552	0.84
43_K	47_Y	0.552	0.84
96_S	101_G	0.551	0.84
16_L	222_A	0.551	0.84
38_H	55_V	0.551	0.84
164_S	167_I	0.543	0.83
166_S	170_W	0.543	0.83
98_K	111_K	0.541	0.83
80_K	107_N	0.538	0.82
126_T	164_S	0.537	0.82
50_V	71_F	0.534	0.82
36_F	61_S	0.532	0.82
159_A	192_L	0.527	0.81
172_G	185_V	0.522	0.80
26_G	35_P	0.520	0.80
67_L	232_G	0.518	0.80
52_L	59_L	0.518	0.80
226_I	232_G	0.518	0.80
78_V	84_I	0.516	0.80
74_N	80_K	0.515	0.80
149_A	198_I	0.515	0.80
143_Y	169_G	0.515	0.80
187_V	201_S	0.513	0.79
99_K	140_N	0.513	0.79
188_H	200_E	0.512	0.79
55_V	233_P	0.511	0.79
121_V	161_G	0.511	0.79
153_V	157_I	0.511	0.79
97_Y	101_G	0.510	0.79
52_L	230_E	0.506	0.78
119_N	157_I	0.506	0.78
102_E	140_N	0.505	0.78
219_F	234_T	0.505	0.78
108_D	111_K	0.505	0.78
125_Y	205_M	0.503	0.78
107_N	136_D	0.501	0.78
148_G	151_Y	0.500	0.78

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4m8dA	4	0.9588	100	0.174	Contact Map
1r61A	3	0.8436	100	0.198	Contact Map
4co9A	2	0.8519	100	0.205	Contact Map
4cogA	3	0.8519	100	0.211	Contact Map
4cobA	2	0.8477	100	0.212	Contact Map
2b0aA	2	0.749	100	0.27	Contact Map
2fi9A	1	0.4856	40	0.95	Contact Map
3cpkA	1	0.4609	35	0.951	Contact Map
1tq1A	1	0.3992	33.3	0.952	Contact Map
2gm2A	1	0.4897	32.8	0.952	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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