Q97UE8 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97UE8 - Uncharacterized protein

UniProt:	Q97UE8	Sequences: MFSKNSLPIISRYSILKYLTDYFHNMRDKIILFLGGVAFGTAAIFVKFCTITPPFITFLRFLIAGILLLPFVSKRRRKIILKRFILPSLFLSLHMLFFVSSVFLTTIASSTILVSTSPIFAMLFKKKIDPFIIMAILGIFIMNFNTSFGYIFGNVLAILSAISFAIYTYFLSRLDYDSLSIIPIIYLISSIFMIPVLPFYGLGDINPISILAVLGLVLVPTLIGHGSVIYTANKLPISLVTSAELIEPVMATILAIPIFHQIPDTQELIGGTITLISIYFAFRR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	284 (255)
Sequences:	31870 (23986)
Seq/√Len:	1502.1

ECOLI - RHTA YIJE YDDG YHBE YEDA EAMA YTFF RARD YICL
BACSU - YXXF YETK YCBK YDEK YBFH YDFC YVBV YDED YCXC YOAV YWFM YOJE YRDR YYAM
HALSA - Q9HQ34 Q9HHP6 Q9HPI0
SULSO - Q97UE8 Q97UX3 Q97X73

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
101_S	157_A	3.409	1.00
109_S	154_N	2.868	1.00
230_Y	234_K	2.819	1.00
31_I	230_Y	2.816	1.00
255_A	261_Q	2.716	1.00
65_G	187_L	2.627	1.00
100_S	156_L	2.477	1.00
230_Y	233_N	2.388	1.00
58_F	194_I	2.381	1.00
45_F	215_G	2.379	1.00
40_G	250_M	2.310	1.00
111_T	251_A	2.282	1.00
97_F	159_L	2.259	1.00
47_K	261_Q	2.191	1.00
207_P	211_L	2.181	1.00
77_R	80_I	2.164	1.00
46_V	99_V	2.163	1.00
63_I	217_V	2.150	1.00
32_L	231_T	2.150	1.00
97_F	156_L	2.051	1.00
120_F	161_A	1.985	1.00
126_K	172_S	1.934	1.00
217_V	222_L	1.920	1.00
40_G	254_L	1.908	1.00
93_L	163_S	1.889	1.00
79_I	82_K	1.837	1.00
69_L	183_P	1.831	1.00
121_A	241_T	1.816	1.00
62_L	190_S	1.798	1.00
37_V	250_M	1.784	1.00
41_T	215_G	1.746	1.00
116_T	120_F	1.722	1.00
65_G	190_S	1.719	1.00
105_T	154_N	1.710	1.00
155_V	159_L	1.709	1.00
206_N	209_S	1.676	1.00
104_L	152_F	1.663	1.00
78_K	82_K	1.663	1.00
97_F	163_S	1.622	1.00
191_I	195_P	1.621	1.00
51_I	209_S	1.605	1.00
70_P	73_S	1.579	1.00
122_M	132_I	1.577	1.00
49_C	56_I	1.562	1.00
69_L	73_S	1.556	1.00
110_S	157_A	1.554	1.00
105_T	153_G	1.543	1.00
120_F	165_A	1.534	1.00
236_P	239_L	1.534	1.00
177_D	180_S	1.532	1.00
264_D	267_E	1.518	1.00
195_P	198_P	1.518	1.00
64_A	186_Y	1.507	1.00
120_F	162_I	1.457	1.00
56_I	216_L	1.454	1.00
58_F	190_S	1.450	1.00
71_F	75_R	1.441	1.00
151_I	154_N	1.437	1.00
35_G	231_T	1.436	1.00
50_T	209_S	1.417	1.00
38_A	219_V	1.415	1.00
171_L	229_I	1.414	1.00
100_S	104_L	1.414	1.00
31_I	227_S	1.412	1.00
135_A	245_L	1.404	1.00
250_M	254_L	1.398	1.00
66_I	70_P	1.394	1.00
265_T	269_I	1.386	1.00
105_T	109_S	1.385	1.00
254_L	258_I	1.371	1.00
70_P	74_K	1.362	1.00
29_K	243_A	1.356	1.00
48_F	212_A	1.351	1.00
52_T	55_F	1.340	1.00
112_I	271_G	1.337	1.00
83_R	170_F	1.332	1.00
207_P	210_I	1.325	1.00
268_L	272_T	1.306	1.00
100_S	103_F	1.293	1.00
208_I	211_L	1.290	1.00
83_R	174_L	1.279	1.00
44_I	254_L	1.275	1.00
141_I	273_I	1.267	1.00
165_A	169_Y	1.237	1.00
80_I	176_Y	1.236	1.00
124_F	169_Y	1.236	1.00
86_L	170_F	1.230	1.00
67_L	222_L	1.228	1.00
41_T	254_L	1.224	1.00
172_S	236_P	1.223	1.00
107_I	255_A	1.216	1.00
108_A	252_T	1.205	1.00
27_R	234_K	1.199	1.00
208_I	212_A	1.195	1.00
272_T	276_I	1.191	1.00
77_R	81_L	1.181	1.00
246_I	250_M	1.174	1.00
60_R	221_T	1.171	1.00
133_I	137_L	1.170	1.00
90_F	166_I	1.168	1.00
45_F	212_A	1.168	1.00
92_S	192_F	1.165	1.00
76_R	80_I	1.162	1.00
192_F	195_P	1.149	1.00
125_K	130_P	1.149	1.00
85_I	188_I	1.148	1.00
39_F	224_G	1.143	1.00
54_P	196_V	1.132	1.00
65_G	183_P	1.128	1.00
127_K	131_F	1.123	1.00
105_T	157_A	1.119	1.00
104_L	156_L	1.119	1.00
30_I	34_L	1.117	1.00
151_I	155_V	1.112	1.00
39_F	228_V	1.110	1.00
113_L	161_A	1.109	1.00
205_I	210_I	1.108	1.00
89_L	192_F	1.107	1.00
58_F	197_L	1.090	1.00
140_F	144_F	1.085	1.00
92_S	193_M	1.082	1.00
88_S	188_I	1.078	1.00
141_I	266_Q	1.077	1.00
54_P	96_L	1.075	1.00
152_F	156_L	1.072	1.00
102_V	110_S	1.067	1.00
58_F	62_L	1.066	1.00
144_F	264_D	1.065	1.00
211_L	215_G	1.061	1.00
98_F	102_V	1.061	1.00
90_F	163_S	1.059	1.00
46_V	102_V	1.057	1.00
104_L	150_Y	1.051	1.00
104_L	153_G	1.049	1.00
77_R	82_K	1.046	1.00
57_T	99_V	1.039	1.00
28_D	234_K	1.039	1.00
263_P	268_L	1.038	1.00
173_R	176_Y	1.035	1.00
49_C	209_S	1.026	1.00
49_C	212_A	1.023	1.00
35_G	227_S	1.018	1.00
131_F	280_F	1.016	1.00
44_I	258_I	1.015	1.00
106_T	109_S	1.013	1.00
28_D	231_T	1.005	1.00
161_A	165_A	1.005	1.00
62_L	194_I	1.005	1.00
211_L	214_L	1.005	1.00
67_L	218_L	1.001	1.00
83_R	87_P	0.986	1.00
35_G	39_F	0.986	1.00
265_T	268_L	0.984	1.00
214_L	217_V	0.981	1.00
61_F	189_S	0.974	1.00
121_A	168_T	0.974	1.00
152_F	155_V	0.971	1.00
112_I	140_F	0.966	1.00
252_T	263_P	0.964	1.00
50_T	206_N	0.961	1.00
113_L	154_N	0.960	1.00
232_A	236_P	0.956	1.00
121_A	165_A	0.954	1.00
172_S	237_I	0.954	1.00
113_L	157_A	0.953	1.00
249_V	271_G	0.952	1.00
121_A	237_I	0.952	1.00
33_F	250_M	0.951	1.00
134_M	277_S	0.945	1.00
57_T	193_M	0.945	1.00
121_A	169_Y	0.944	1.00
232_A	240_V	0.935	1.00
34_L	227_S	0.931	1.00
236_P	240_V	0.930	1.00
126_K	129_D	0.930	1.00
125_K	128_I	0.905	1.00
196_V	200_Y	0.903	1.00
107_I	261_Q	0.900	1.00
210_I	214_L	0.900	1.00
142_M	270_G	0.899	1.00
215_G	219_V	0.897	1.00
36_G	246_I	0.893	1.00
90_F	170_F	0.888	1.00
107_I	259_F	0.887	1.00
138_G	270_G	0.887	1.00
38_A	227_S	0.884	1.00
92_S	96_L	0.881	1.00
235_L	240_V	0.881	1.00
153_G	157_A	0.879	1.00
195_P	199_F	0.878	1.00
83_R	173_R	0.875	1.00
53_P	57_T	0.871	1.00
252_T	271_G	0.871	1.00
125_K	129_D	0.868	1.00
219_V	223_I	0.867	1.00
29_K	239_L	0.867	1.00
55_F	197_L	0.865	1.00
36_G	40_G	0.860	1.00
148_F	151_I	0.855	1.00
139_I	143_N	0.852	1.00
82_K	86_L	0.847	1.00
43_A	98_F	0.846	1.00
69_L	187_L	0.844	1.00
36_G	250_M	0.838	1.00
68_L	222_L	0.838	1.00
91_L	167_Y	0.834	1.00
116_T	139_I	0.833	1.00
213_V	217_V	0.829	1.00
87_P	90_F	0.822	1.00
96_L	100_S	0.819	1.00
206_N	210_I	0.816	1.00
44_I	255_A	0.815	1.00
135_A	277_S	0.807	1.00
256_I	263_P	0.803	1.00
150_Y	154_N	0.802	1.00
199_F	202_L	0.795	1.00
214_L	218_L	0.795	1.00
172_S	175_D	0.786	1.00
101_S	110_S	0.786	1.00
223_I	227_S	0.784	1.00
256_I	262_I	0.781	1.00
91_L	225_H	0.778	1.00
196_V	199_F	0.775	1.00
198_P	201_G	0.772	1.00
231_T	240_V	0.771	1.00
138_G	274_T	0.771	1.00
119_I	135_A	0.769	1.00
124_F	166_I	0.758	1.00
164_F	168_T	0.750	1.00
141_I	269_I	0.750	1.00
42_A	220_P	0.746	1.00
235_L	239_L	0.746	1.00
72_V	183_P	0.742	1.00
94_H	163_S	0.742	1.00
78_K	81_L	0.739	1.00
59_L	63_I	0.735	1.00
127_K	130_P	0.734	1.00
266_Q	269_I	0.732	1.00
137_L	141_I	0.731	1.00
62_L	66_I	0.726	1.00
180_S	184_I	0.722	1.00
67_L	70_P	0.722	1.00
44_I	107_I	0.719	1.00
271_G	275_L	0.715	1.00
43_A	111_T	0.710	1.00
63_I	213_V	0.706	1.00
67_L	217_V	0.699	1.00
38_A	220_P	0.696	1.00
55_F	59_L	0.694	1.00
269_I	273_I	0.691	1.00
183_P	187_L	0.690	1.00
101_S	153_G	0.689	1.00
157_A	161_A	0.689	1.00
166_I	170_F	0.688	1.00
187_L	191_I	0.687	1.00
51_I	55_F	0.687	1.00
167_Y	229_I	0.687	1.00
205_I	209_S	0.686	1.00
184_I	188_I	0.684	1.00
126_K	238_S	0.676	1.00
64_A	217_V	0.676	1.00
59_L	213_V	0.675	1.00
27_R	31_I	0.673	1.00
188_I	192_F	0.671	1.00
113_L	158_I	0.668	1.00
115_S	118_P	0.665	1.00
91_L	185_I	0.662	1.00
206_N	211_L	0.661	1.00
182_I	229_I	0.659	1.00
124_F	162_I	0.658	1.00
212_A	215_G	0.657	1.00
52_T	201_G	0.655	1.00
71_F	74_K	0.654	1.00
188_I	191_I	0.652	1.00
83_R	86_L	0.650	1.00
246_I	249_V	0.645	1.00
262_I	266_Q	0.645	1.00
137_L	273_I	0.644	1.00
51_I	56_I	0.643	1.00
255_A	259_F	0.642	1.00
263_P	267_E	0.640	1.00
146_T	149_G	0.636	1.00
93_L	97_F	0.635	1.00
75_R	177_D	0.635	1.00
120_F	158_I	0.631	1.00
164_F	228_V	0.629	1.00
253_I	256_I	0.629	1.00
168_T	228_V	0.626	1.00
226_G	230_Y	0.626	1.00
42_A	216_L	0.625	1.00
262_I	267_E	0.622	1.00
32_L	235_L	0.619	1.00
253_I	257_P	0.615	1.00
65_G	69_L	0.614	1.00
48_F	259_F	0.614	1.00
231_T	235_L	0.614	1.00
252_T	256_I	0.613	1.00
88_S	92_S	0.612	1.00
71_F	179_L	0.611	1.00
72_V	75_R	0.609	1.00
200_Y	203_G	0.609	1.00
84_F	181_I	0.606	1.00
148_F	152_F	0.606	1.00
76_R	82_K	0.605	1.00
42_A	99_V	0.605	1.00
123_L	132_I	0.604	1.00
190_S	194_I	0.602	1.00
278_I	281_A	0.601	1.00
264_D	268_L	0.601	1.00
64_A	222_L	0.600	1.00
105_T	110_S	0.599	1.00
32_L	243_A	0.598	1.00
168_T	241_T	0.596	1.00
184_I	187_L	0.589	1.00
209_S	212_A	0.588	1.00
254_L	257_P	0.588	1.00
112_I	143_N	0.588	1.00
63_I	67_L	0.586	1.00
178_S	182_I	0.581	1.00
92_S	196_V	0.581	1.00
98_F	160_S	0.580	1.00
156_L	159_L	0.579	1.00
75_R	179_L	0.579	1.00
167_Y	185_I	0.574	1.00
44_I	251_A	0.569	1.00
27_R	230_Y	0.569	1.00
94_H	98_F	0.568	1.00
28_D	235_L	0.564	1.00
187_L	190_S	0.563	1.00
64_A	221_T	0.563	1.00
98_F	110_S	0.557	1.00
122_M	128_I	0.554	1.00
118_P	245_L	0.553	1.00
116_T	119_I	0.553	1.00
267_E	271_G	0.552	1.00
29_K	235_L	0.552	1.00
76_R	79_I	0.551	1.00
198_P	202_L	0.548	1.00
79_I	83_R	0.546	1.00
197_L	201_G	0.544	1.00
84_F	184_I	0.544	1.00
40_G	247_E	0.543	1.00
32_L	228_V	0.543	1.00
38_A	224_G	0.542	1.00
162_I	166_I	0.542	1.00
54_P	193_M	0.541	1.00
91_L	95_M	0.540	1.00
33_F	36_G	0.535	1.00
27_R	30_I	0.533	1.00
167_Y	171_L	0.532	1.00
136_I	245_L	0.531	1.00
28_D	31_I	0.531	1.00
276_I	280_F	0.531	1.00
277_S	281_A	0.530	1.00
84_F	188_I	0.530	1.00
116_T	161_A	0.529	1.00
201_G	204_D	0.529	1.00
147_S	150_Y	0.528	1.00
147_S	151_I	0.528	1.00
85_I	89_L	0.528	1.00
34_L	38_A	0.527	1.00
36_G	247_E	0.527	1.00
54_P	200_Y	0.527	1.00
115_S	161_A	0.527	1.00
40_G	251_A	0.526	1.00
199_F	203_G	0.524	1.00
141_I	267_E	0.523	1.00
52_T	200_Y	0.518	1.00
143_N	154_N	0.518	1.00
189_S	193_M	0.517	1.00
115_S	139_I	0.516	1.00
72_V	180_S	0.514	1.00
249_V	275_L	0.512	1.00
245_L	278_I	0.512	1.00
91_L	189_S	0.512	1.00
88_S	192_F	0.511	1.00
94_H	114_V	0.509	1.00
89_L	92_S	0.508	1.00
85_I	192_F	0.506	1.00
70_P	75_R	0.504	1.00
97_F	160_S	0.501	1.00
268_L	271_G	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2i68A	2	0.2711	98.8	0.777	Contact Map
3b5dA	2	0.3521	98.3	0.812	Contact Map
4xnjA	1	0.7887	13.7	0.945	Contact Map
2cfqA	1	0.6232	6.5	0.953	Contact Map
2gfpA	2	0.6585	6	0.954	Contact Map
3o7qA	1	0.9085	5.2	0.955	Contact Map
1pw4A	1	0.9824	4.9	0.955	Contact Map
3dh4A	3	0.1655	4.4	0.956	Contact Map
2ksfA	1	0.338	4.2	0.957	Contact Map
2xq2A	2	0.2535	4	0.957	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0088 seconds.