Q97UA9 - SULSO - GREMLIN Contacts

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Q97UA9 - Uncharacterized protein

UniProt:	Q97UA9	Sequences: MENSESILNALKEIFNVDLSKYWNEAEEINNGIKRVLGNSFRYALSETKRYVLYSIIKYYNPDIVIETGVGPGVSSTIILSALERGTLHSIDVRETLENGKQVGFLVPEQLKSKWKLYIGRSRDILLDLLKKLGKVDIFLHDSEHTFENVTFELNIAWDYLRNGGILLIDNLDFTEAPYYFTKQKGVKLYELTNEAGGLGIIIKS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	205 (176)
Sequences:	3796 (2607)
Seq/√Len:	196.5

BACSU - YRRM
HALSA - Q9HRG3
SULSO - Q97UA9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
91_I	125_I	3.837	1.00
106_L	112_K	3.432	1.00
87_T	116_K	3.422	1.00
161_L	165_G	2.983	1.00
65_V	79_I	2.866	1.00
28_E	108_P	2.659	1.00
89_H	136_V	2.584	1.00
127_L	156_I	2.539	1.00
70_V	90_S	2.441	1.00
57_I	79_I	2.414	1.00
123_R	152_F	2.336	1.00
98_E	119_I	2.308	1.00
149_N	152_F	2.236	1.00
50_R	78_I	2.218	1.00
89_H	118_Y	2.194	1.00
95_E	99_N	2.178	1.00
138_I	168_L	2.120	1.00
156_I	159_D	2.054	1.00
83_L	86_G	1.977	1.00
64_I	87_T	1.939	1.00
143_S	153_E	1.897	1.00
83_L	88_L	1.843	1.00
66_I	136_V	1.809	1.00
23_W	81_S	1.807	1.00
144_E	149_N	1.765	1.00
139_F	161_L	1.735	1.00
139_F	157_A	1.710	1.00
120_G	125_I	1.688	1.00
77_T	111_L	1.671	1.00
57_I	138_I	1.649	1.00
98_E	117_L	1.643	1.00
118_Y	125_I	1.637	1.00
105_F	115_W	1.635	1.00
13_E	17_V	1.618	1.00
154_L	169_I	1.552	1.00
76_S	88_L	1.542	1.00
54_Y	82_A	1.540	1.00
121_R	124_D	1.533	1.00
32_G	108_P	1.526	1.00
64_I	134_G	1.404	1.00
94_R	97_L	1.381	1.00
123_R	149_N	1.363	1.00
59_Y	166_I	1.338	1.00
32_G	103_V	1.329	1.00
188_K	192_L	1.301	1.00
150_V	169_I	1.298	1.00
141_H	167_L	1.295	1.00
22_Y	30_N	1.284	1.00
103_V	108_P	1.284	1.00
92_D	98_E	1.281	1.00
145_H	150_V	1.272	1.00
191_E	194_N	1.255	1.00
43_Y	71_G	1.246	1.00
169_I	194_N	1.228	1.00
135_K	162_R	1.219	1.00
77_T	109_E	1.204	1.00
151_T	155_N	1.203	1.00
33_I	44_A	1.193	1.00
22_Y	26_A	1.185	1.00
190_Y	194_N	1.148	1.00
54_Y	78_I	1.142	1.00
79_I	88_L	1.132	1.00
102_Q	119_I	1.129	1.00
65_V	88_L	1.128	1.00
33_I	72_P	1.126	1.00
45_L	50_R	1.118	1.00
57_I	82_A	1.116	1.00
89_H	116_K	1.111	1.00
54_Y	58_K	1.099	1.00
29_I	33_I	1.097	1.00
103_V	106_L	1.097	1.00
95_E	119_I	1.097	1.00
23_W	26_A	1.095	1.00
105_F	111_L	1.086	1.00
27_E	31_N	1.050	1.00
76_S	105_F	1.045	1.00
111_L	114_K	1.043	1.00
56_I	168_L	1.041	1.00
28_E	32_G	1.040	1.00
27_E	81_S	1.039	1.00
145_H	170_D	1.039	1.00
29_I	109_E	1.038	1.00
76_S	79_I	1.032	1.00
98_E	102_Q	1.030	1.00
45_L	75_S	1.030	1.00
93_V	121_R	1.021	1.00
162_R	165_G	1.016	1.00
62_P	86_G	1.011	1.00
16_N	48_T	1.008	1.00
186_G	189_L	1.007	1.00
68_T	91_I	0.990	1.00
102_Q	106_L	0.987	1.00
152_F	155_N	0.986	1.00
144_E	148_E	0.983	0.99
105_F	117_L	0.972	0.99
189_L	192_L	0.970	0.99
185_K	188_K	0.961	0.99
141_H	169_I	0.952	0.99
53_L	168_L	0.947	0.99
99_N	103_V	0.942	0.99
50_R	74_V	0.942	0.99
22_Y	27_E	0.939	0.99
64_I	136_V	0.926	0.99
51_Y	54_Y	0.922	0.99
155_N	158_W	0.913	0.99
80_L	115_W	0.911	0.99
84_E	114_K	0.901	0.99
64_I	135_K	0.899	0.99
137_D	162_R	0.895	0.99
25_E	28_E	0.890	0.99
24_N	27_E	0.884	0.99
57_I	60_Y	0.883	0.99
185_K	192_L	0.883	0.99
188_K	191_E	0.883	0.99
57_I	65_V	0.879	0.99
67_E	88_L	0.872	0.99
80_L	111_L	0.869	0.99
32_G	104_G	0.863	0.99
121_R	125_I	0.862	0.99
125_I	128_D	0.853	0.99
80_L	88_L	0.852	0.99
177_A	180_Y	0.850	0.99
173_D	178_P	0.848	0.99
90_S	115_W	0.847	0.98
65_V	83_L	0.847	0.98
186_G	190_Y	0.847	0.98
53_L	57_I	0.846	0.98
45_L	49_K	0.844	0.98
36_V	40_S	0.840	0.98
118_Y	128_D	0.840	0.98
29_I	77_T	0.834	0.98
154_L	158_W	0.833	0.98
34_K	47_E	0.832	0.98
64_I	89_H	0.829	0.98
190_Y	193_T	0.825	0.98
55_S	59_Y	0.824	0.98
189_L	193_T	0.821	0.98
55_S	166_I	0.819	0.98
77_T	105_F	0.815	0.98
12_K	16_N	0.812	0.98
139_F	165_G	0.811	0.98
124_D	128_D	0.802	0.98
135_K	163_N	0.800	0.98
91_I	121_R	0.797	0.98
161_L	167_L	0.790	0.98
185_K	190_Y	0.786	0.98
100_G	103_V	0.786	0.98
174_F	188_K	0.783	0.97
54_Y	81_S	0.782	0.97
145_H	171_N	0.778	0.97
57_I	62_P	0.770	0.97
91_I	118_Y	0.763	0.97
120_G	124_D	0.761	0.97
109_E	112_K	0.756	0.97
188_K	194_N	0.752	0.97
133_L	160_Y	0.750	0.97
53_L	79_I	0.745	0.97
186_G	191_E	0.736	0.96
60_Y	162_R	0.734	0.96
15_F	19_L	0.729	0.96
183_K	186_G	0.728	0.96
85_R	114_K	0.728	0.96
14_I	18_D	0.728	0.96
102_Q	112_K	0.721	0.96
26_A	29_I	0.718	0.96
75_S	140_L	0.715	0.96
75_S	142_D	0.710	0.96
66_I	139_F	0.709	0.96
51_Y	78_I	0.706	0.95
70_V	105_F	0.704	0.95
62_P	65_V	0.704	0.95
70_V	76_S	0.702	0.95
79_I	90_S	0.699	0.95
13_E	16_N	0.697	0.95
66_I	157_A	0.691	0.95
70_V	117_L	0.690	0.95
36_V	100_G	0.682	0.94
90_S	105_F	0.673	0.94
92_D	117_L	0.668	0.94
83_L	114_K	0.667	0.94
76_S	80_L	0.665	0.94
49_K	172_L	0.662	0.94
16_N	20_S	0.662	0.94
45_L	53_L	0.661	0.94
50_R	53_L	0.657	0.93
157_A	160_Y	0.653	0.93
188_K	193_T	0.650	0.93
56_I	59_Y	0.648	0.93
129_L	134_G	0.644	0.93
62_P	137_D	0.640	0.92
126_L	157_A	0.637	0.92
36_V	72_P	0.636	0.92
140_L	171_N	0.635	0.92
25_E	104_G	0.635	0.92
102_Q	117_L	0.632	0.92
80_L	114_K	0.630	0.92
141_H	153_E	0.629	0.92
187_V	191_E	0.623	0.91
48_T	52_V	0.621	0.91
186_G	192_L	0.619	0.91
65_V	138_I	0.618	0.91
141_H	157_A	0.617	0.91
52_V	56_I	0.616	0.91
140_L	170_D	0.616	0.91
149_N	153_E	0.613	0.91
123_R	156_I	0.609	0.90
104_G	108_P	0.609	0.90
28_E	31_N	0.606	0.90
92_D	101_K	0.606	0.90
67_E	76_S	0.605	0.90
123_R	153_E	0.605	0.90
41_F	71_G	0.604	0.90
12_K	15_F	0.604	0.90
18_D	22_Y	0.603	0.90
32_G	37_L	0.602	0.90
49_K	53_L	0.600	0.90
150_V	170_D	0.599	0.90
93_V	119_I	0.597	0.90
150_V	171_N	0.596	0.89
89_H	134_G	0.592	0.89
144_E	153_E	0.586	0.89
158_W	161_L	0.586	0.89
74_V	78_I	0.585	0.89
15_F	18_D	0.584	0.89
124_D	127_L	0.583	0.88
78_I	82_A	0.582	0.88
77_T	81_S	0.581	0.88
184_Q	187_V	0.579	0.88
54_Y	57_I	0.574	0.88
76_S	90_S	0.573	0.88
189_L	194_N	0.571	0.87
118_Y	129_L	0.570	0.87
55_S	58_K	0.567	0.87
56_I	166_I	0.565	0.87
187_V	193_T	0.563	0.87
43_Y	145_H	0.562	0.87
141_H	154_L	0.561	0.87
87_T	134_G	0.555	0.86
187_V	190_Y	0.555	0.86
42_R	71_G	0.554	0.86
159_D	163_N	0.552	0.86
175_T	178_P	0.548	0.85
185_K	191_E	0.546	0.85
79_I	138_I	0.540	0.84
174_F	178_P	0.539	0.84
180_Y	192_L	0.539	0.84
122_S	153_E	0.537	0.84
78_I	81_S	0.535	0.84
126_L	160_Y	0.532	0.84
157_A	161_L	0.531	0.83
60_Y	138_I	0.529	0.83
42_R	175_T	0.526	0.83
182_T	193_T	0.524	0.83
45_L	140_L	0.523	0.82
125_I	129_L	0.519	0.82
26_A	30_N	0.517	0.82
67_E	170_D	0.513	0.81
68_T	122_S	0.511	0.81
13_E	27_E	0.508	0.81
152_F	156_I	0.507	0.81
187_V	194_N	0.503	0.80
125_I	134_G	0.503	0.80
50_R	82_A	0.501	0.80
121_R	149_N	0.500	0.80

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3tosA	5	0.9024	100	0.472	Contact Map
3tr6A	2	0.961	100	0.484	Contact Map
1suiA	2	0.9659	100	0.523	Contact Map
2hnkA	2	0.9561	100	0.526	Contact Map
3c3yA	2	0.961	99.9	0.53	Contact Map
4ymhA	2	0.9659	99.9	0.53	Contact Map
3r3hA	2	0.9463	99.9	0.533	Contact Map
3cbgA	2	0.9512	99.9	0.54	Contact Map
3dr5A	2	0.9073	99.9	0.544	Contact Map
2gpyA	2	0.8049	99.9	0.544	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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