Q97U90 - SULSO - GREMLIN Contacts

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Q97U90 - Iron-sulfur protein, conserved putative

UniProt:	Q97U90	Sequences: MVNDWDIAIKRGVEHNVPRVFKVLREHPYLEDLARKVREGKLEVLSNLDYYIEMTMKSVERIGGKAYFVENAEQAREIVGKIVGNGKRVVMGKSMVAYETGIRKYLQSLGNEVWETDLGELLIQFADEPPSHIIAPAVHMTRERIRELIKEKLGVDPGDKHEDIVKVAREFLRQKFLTADIGITGANAVAADAGSIVLVENEGNIRMSSVVPPVHISITGVEKILPNLEYAIYEALVQAAYAGLYPPTYINVTSGPSSTGDVEQKRVSPAHGPKEFHLILVDNGRRKANEDPVLREALLCIRCGRCHFHCPVYRVLDGKWGDPPYSGPMGAMWSGIVYNDYKPALLCSHAGNCREVCPMKINIPKVLEYLKNKYFSMMRAGTKE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	384 (362)
Sequences:	1232 (572)
Seq/√Len:	30.1

ECOLI - YKGF
BACSU - LUTB
HALSA - Q9HHI4
SULSO - Q97U90

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
59_V	64_G	4.609	1.00
77_E	81_K	3.985	1.00
55_T	278_L	3.956	1.00
56_M	60_E	3.810	1.00
83_V	181_I	3.631	1.00
42_L	299_L	3.498	1.00
181_I	216_I	3.461	1.00
59_V	278_L	3.310	1.00
35_R	360_K	3.248	1.00
80_G	109_L	3.225	1.00
105_Y	109_L	3.175	1.00
64_G	276_F	3.049	1.00
59_V	276_F	2.984	1.00
83_V	216_I	2.929	1.00
58_S	61_R	2.927	1.00
79_V	279_I	2.927	1.00
81_K	85_N	2.877	1.00
362_N	365_K	2.813	1.00
331_A	367_L	2.776	1.00
97_A	218_I	2.744	1.00
67_Y	78_I	2.731	1.00
54_M	57_K	2.720	1.00
354_R	364_P	2.688	1.00
80_G	105_Y	2.638	1.00
195_S	252_V	2.630	1.00
73_E	77_E	2.614	1.00
195_S	254_S	2.607	1.00
126_A	140_M	2.591	1.00
86_G	275_E	2.546	0.99
128_E	140_M	2.522	0.99
297_A	329_M	2.506	0.99
37_V	236_L	2.411	0.99
43_E	51_Y	2.399	0.99
38_R	299_L	2.367	0.99
47_N	50_Y	2.327	0.99
86_G	214_V	2.324	0.99
126_A	148_L	2.296	0.99
64_G	278_L	2.271	0.99
112_E	175_K	2.267	0.99
293_V	369_Y	2.263	0.99
189_V	219_T	2.173	0.98
90_V	179_A	2.160	0.98
90_V	116_T	2.144	0.98
174_Q	178_T	2.139	0.98
332_M	363_I	2.122	0.98
70_E	74_Q	2.102	0.98
213_P	274_K	2.077	0.98
44_V	51_Y	2.047	0.97
221_V	280_L	2.019	0.97
180_D	213_P	2.010	0.97
43_E	47_N	2.008	0.97
186_A	219_T	1.965	0.97
87_K	180_D	1.929	0.96
332_M	366_V	1.905	0.96
347_C	363_I	1.882	0.96
82_I	214_V	1.873	0.96
190_A	230_Y	1.872	0.96
67_Y	277_H	1.870	0.96
96_V	281_V	1.828	0.95
184_T	209_S	1.805	0.95
53_E	57_K	1.792	0.94
288_A	336_I	1.789	0.94
55_T	59_V	1.780	0.94
143_E	159_D	1.768	0.94
89_V	183_I	1.759	0.94
55_T	189_V	1.755	0.94
158_G	163_D	1.749	0.94
71_N	74_Q	1.722	0.93
45_L	299_L	1.720	0.93
69_V	78_I	1.709	0.93
65_K	275_E	1.707	0.93
307_H	326_S	1.706	0.93
92_G	205_I	1.689	0.92
78_I	82_I	1.685	0.92
89_V	111_N	1.673	0.92
100_T	218_I	1.645	0.91
219_T	280_L	1.635	0.91
38_R	296_E	1.614	0.91
31_E	360_K	1.604	0.90
190_A	225_L	1.588	0.90
331_A	347_C	1.584	0.90
127_D	152_K	1.575	0.90
160_K	163_D	1.573	0.89
296_E	366_V	1.567	0.89
54_M	58_S	1.539	0.88
218_I	279_I	1.512	0.88
347_C	367_L	1.509	0.87
290_E	295_R	1.505	0.87
35_R	39_E	1.492	0.87
197_V	252_V	1.469	0.86
85_N	275_E	1.455	0.85
56_M	68_F	1.453	0.85
192_D	227_N	1.450	0.85
147_E	151_E	1.444	0.85
168_A	172_L	1.428	0.84
41_K	223_K	1.418	0.84
76_R	100_T	1.404	0.83
74_Q	77_E	1.388	0.83
118_L	168_A	1.372	0.82
294_L	373_K	1.369	0.82
291_D	373_K	1.365	0.81
149_I	168_A	1.340	0.80
225_L	230_Y	1.319	0.79
79_V	100_T	1.310	0.79
105_Y	108_S	1.308	0.79
189_V	280_L	1.304	0.78
214_V	275_E	1.300	0.78
369_Y	372_N	1.294	0.78
107_Q	127_D	1.289	0.78
181_I	214_V	1.289	0.78
122_L	149_I	1.284	0.77
40_G	232_I	1.277	0.77
84_G	109_L	1.274	0.77
121_L	171_F	1.264	0.76
219_T	278_L	1.252	0.75
349_H	367_L	1.242	0.75
257_S	269_P	1.242	0.75
162_E	166_K	1.230	0.74
296_E	299_L	1.227	0.74
44_V	224_I	1.217	0.73
164_I	168_A	1.211	0.73
96_V	219_T	1.209	0.73
57_K	61_R	1.205	0.73
97_A	183_I	1.199	0.72
16_N	135_A	1.196	0.72
79_V	218_I	1.192	0.72
78_I	277_H	1.184	0.71
47_N	51_Y	1.183	0.71
134_I	304_G	1.177	0.71
196_I	276_F	1.161	0.70
38_R	42_L	1.158	0.69
46_S	295_R	1.156	0.69
44_V	47_N	1.143	0.68
41_K	233_Y	1.143	0.68
100_T	281_V	1.131	0.68
233_Y	359_M	1.119	0.67
8_A	141_T	1.113	0.66
340_D	343_P	1.112	0.66
102_I	106_L	1.108	0.66
238_Q	250_I	1.105	0.66
153_L	167_V	1.102	0.66
76_R	281_V	1.090	0.65
52_I	68_F	1.083	0.64
80_G	84_G	1.070	0.63
75_A	100_T	1.069	0.63
67_Y	74_Q	1.068	0.63
149_I	164_I	1.068	0.63
140_M	148_L	1.067	0.63
161_H	165_V	1.058	0.62
77_E	105_Y	1.057	0.62
38_R	360_K	1.053	0.62
332_M	347_C	1.052	0.62
119_G	135_A	1.041	0.61
101_G	129_P	1.037	0.61
186_A	223_K	1.034	0.61
68_F	280_L	1.029	0.60
197_V	230_Y	1.023	0.60
18_P	22_K	1.016	0.59
150_K	156_D	1.015	0.59
62_I	256_P	1.008	0.59
49_D	53_E	1.008	0.59
218_I	281_V	1.006	0.58
135_A	138_V	1.003	0.58
102_I	183_I	1.000	0.58
94_S	97_A	0.989	0.57
182_G	212_P	0.989	0.57
29_Y	32_D	0.987	0.57
138_V	304_G	0.985	0.57
62_I	255_G	0.983	0.57
32_D	35_R	0.979	0.56
104_K	108_S	0.977	0.56
293_V	373_K	0.976	0.56
88_R	175_K	0.974	0.56
186_A	189_V	0.972	0.56
118_L	165_V	0.951	0.54
82_I	86_G	0.946	0.54
61_R	72_A	0.945	0.54
172_L	244_L	0.943	0.53
196_I	219_T	0.940	0.53
186_A	280_L	0.935	0.53
168_A	244_L	0.934	0.53
85_N	377_M	0.931	0.53
200_E	206_R	0.931	0.53
108_S	279_I	0.930	0.52
115_E	325_Y	0.928	0.52
98_Y	103_R	0.927	0.52
55_T	276_F	0.926	0.52
201_N	304_G	0.925	0.52
196_I	217_S	0.922	0.52
92_G	198_L	0.922	0.52
150_K	155_V	0.917	0.51
199_V	234_E	0.917	0.51
188_A	230_Y	0.916	0.51
35_R	38_R	0.916	0.51
128_E	148_L	0.915	0.51
7_I	11_R	0.909	0.51
72_A	76_R	0.899	0.50
9_I	314_R	0.896	0.50
241_Y	304_G	0.885	0.49
294_L	366_V	0.884	0.49
51_Y	226_P	0.872	0.48
146_R	150_K	0.865	0.47
103_R	244_L	0.864	0.47
234_E	250_I	0.861	0.47
52_I	56_M	0.860	0.47
351_G	367_L	0.856	0.47
209_S	253_T	0.853	0.46
88_R	178_T	0.853	0.46
21_F	25_R	0.853	0.46
354_R	362_N	0.851	0.46
372_N	376_S	0.850	0.46
133_I	326_S	0.849	0.46
49_D	289_N	0.848	0.46
9_I	138_V	0.841	0.45
166_K	170_E	0.840	0.45
369_Y	373_K	0.838	0.45
55_T	58_S	0.838	0.45
91_M	350_A	0.835	0.45
297_A	332_M	0.832	0.45
292_P	295_R	0.831	0.45
244_L	248_T	0.826	0.44
45_L	48_L	0.825	0.44
79_V	183_I	0.825	0.44
58_S	192_D	0.822	0.44
104_K	107_Q	0.819	0.44
140_M	144_R	0.818	0.44
334_S	343_P	0.816	0.43
55_T	190_A	0.812	0.43
94_S	218_I	0.811	0.43
55_T	224_I	0.807	0.43
184_T	206_R	0.807	0.43
184_T	215_H	0.804	0.42
151_E	170_E	0.802	0.42
149_I	308_F	0.800	0.42
200_E	251_N	0.796	0.42
57_K	104_K	0.792	0.42
119_G	201_N	0.790	0.41
255_G	351_G	0.789	0.41
206_R	210_V	0.785	0.41
299_L	366_V	0.779	0.41
123_I	128_E	0.776	0.40
209_S	217_S	0.772	0.40
62_I	254_S	0.767	0.40
188_A	359_M	0.766	0.40
288_A	297_A	0.765	0.39
6_D	329_M	0.763	0.39
103_R	350_A	0.763	0.39
354_R	365_K	0.763	0.39
19_R	326_S	0.755	0.39
146_R	159_D	0.755	0.39
348_S	355_E	0.752	0.39
324_P	334_S	0.750	0.38
246_P	250_I	0.747	0.38
314_R	352_N	0.742	0.38
67_Y	82_I	0.742	0.38
92_G	134_I	0.741	0.38
114_W	145_I	0.740	0.38
88_R	112_E	0.738	0.37
119_G	215_H	0.737	0.37
71_N	251_N	0.736	0.37
183_I	216_I	0.736	0.37
220_G	329_M	0.734	0.37
144_R	286_R	0.731	0.37
31_E	34_A	0.730	0.37
37_V	359_M	0.728	0.37
217_S	363_I	0.728	0.37
53_E	68_F	0.726	0.37
20_V	239_A	0.725	0.36
74_Q	181_I	0.724	0.36
134_I	247_P	0.723	0.36
97_A	102_I	0.723	0.36
115_E	186_A	0.721	0.36
31_E	35_R	0.721	0.36
72_A	100_T	0.720	0.36
316_L	320_W	0.715	0.36
153_L	161_H	0.713	0.36
95_M	98_Y	0.712	0.36
147_E	156_D	0.710	0.35
145_I	164_I	0.709	0.35
114_W	175_K	0.709	0.35
95_M	319_K	0.708	0.35
50_Y	54_M	0.707	0.35
134_I	241_Y	0.706	0.35
234_E	238_Q	0.706	0.35
295_R	363_I	0.706	0.35
137_A	145_I	0.705	0.35
47_N	226_P	0.705	0.35
126_A	145_I	0.704	0.35
43_E	227_N	0.701	0.35
82_I	183_I	0.697	0.34
145_I	236_L	0.694	0.34
328_P	363_I	0.694	0.34
206_R	209_S	0.694	0.34
83_V	183_I	0.693	0.34
146_R	158_G	0.691	0.34
123_I	126_A	0.691	0.34
12_G	19_R	0.689	0.34
20_V	356_V	0.689	0.34
363_I	367_L	0.685	0.34
146_R	157_P	0.684	0.34
334_S	338_Y	0.684	0.34
38_R	366_V	0.675	0.33
198_L	253_T	0.672	0.33
40_G	44_V	0.669	0.32
55_T	280_L	0.669	0.32
134_I	138_V	0.668	0.32
92_G	208_S	0.668	0.32
46_S	214_V	0.667	0.32
305_R	361_I	0.664	0.32
230_Y	252_V	0.664	0.32
155_V	167_V	0.664	0.32
332_M	335_G	0.663	0.32
135_A	142_R	0.660	0.32
97_A	103_R	0.660	0.32
329_M	375_F	0.660	0.32
15_H	135_A	0.658	0.32
8_A	198_L	0.658	0.32
135_A	247_P	0.654	0.31
83_V	111_N	0.653	0.31
175_K	249_Y	0.652	0.31
326_S	363_I	0.651	0.31
183_I	218_I	0.650	0.31
256_P	274_K	0.650	0.31
145_I	154_G	0.649	0.31
289_N	335_G	0.649	0.31
103_R	242_A	0.646	0.31
189_V	224_I	0.646	0.31
103_R	176_F	0.646	0.31
347_C	354_R	0.645	0.31
95_M	318_G	0.644	0.31
186_A	217_S	0.644	0.31
297_A	333_W	0.643	0.31
41_K	288_A	0.641	0.31
165_V	347_C	0.639	0.30
351_G	355_E	0.638	0.30
49_D	286_R	0.638	0.30
62_I	258_S	0.637	0.30
68_F	223_K	0.637	0.30
228_L	252_V	0.636	0.30
172_L	242_A	0.635	0.30
52_I	286_R	0.632	0.30
52_I	224_I	0.631	0.30
70_E	147_E	0.629	0.30
51_Y	54_M	0.626	0.30
55_T	217_S	0.625	0.29
22_K	377_M	0.624	0.29
351_G	364_P	0.623	0.29
90_V	208_S	0.622	0.29
102_I	172_L	0.622	0.29
77_E	104_K	0.622	0.29
354_R	360_K	0.619	0.29
60_E	65_K	0.618	0.29
120_E	133_I	0.618	0.29
49_D	68_F	0.616	0.29
68_F	221_V	0.615	0.29
22_K	53_E	0.614	0.29
80_G	111_N	0.613	0.29
240_A	358_P	0.613	0.29
168_A	319_K	0.613	0.29
287_K	290_E	0.612	0.29
231_A	235_A	0.611	0.29
12_G	135_A	0.611	0.29
101_G	104_K	0.610	0.29
321_G	335_G	0.609	0.28
10_K	252_V	0.608	0.28
52_I	335_G	0.607	0.28
182_G	208_S	0.606	0.28
6_D	355_E	0.606	0.28
288_A	337_V	0.606	0.28
198_L	205_I	0.605	0.28
57_K	60_E	0.603	0.28
75_A	218_I	0.601	0.28
128_E	152_K	0.601	0.28
275_E	278_L	0.601	0.28
103_R	319_K	0.600	0.28
114_W	178_T	0.600	0.28
56_M	223_K	0.598	0.28
92_G	119_G	0.597	0.28
36_K	39_E	0.597	0.28
158_G	352_N	0.597	0.28
273_P	328_P	0.596	0.28
115_E	182_G	0.595	0.28
58_S	62_I	0.594	0.27
41_K	370_L	0.594	0.27
181_I	279_I	0.594	0.27
57_K	85_N	0.593	0.27
91_M	103_R	0.592	0.27
145_I	247_P	0.592	0.27
186_A	278_L	0.592	0.27
280_L	289_N	0.591	0.27
292_P	297_A	0.590	0.27
22_K	73_E	0.588	0.27
20_V	241_Y	0.588	0.27
20_V	24_L	0.588	0.27
44_V	216_I	0.587	0.27
107_Q	279_I	0.587	0.27
206_R	253_T	0.587	0.27
6_D	17_V	0.586	0.27
225_L	340_D	0.586	0.27
44_V	368_E	0.585	0.27
347_C	351_G	0.584	0.27
230_Y	233_Y	0.584	0.27
59_V	363_I	0.583	0.27
129_P	229_E	0.581	0.27
105_Y	229_E	0.580	0.27
115_E	208_S	0.580	0.27
55_T	237_V	0.578	0.26
134_I	320_W	0.578	0.26
309_H	326_S	0.576	0.26
131_S	319_K	0.576	0.26
188_A	225_L	0.574	0.26
147_E	170_E	0.572	0.26
133_I	309_H	0.572	0.26
168_A	242_A	0.572	0.26
196_I	209_S	0.571	0.26
98_Y	244_L	0.571	0.26
77_E	147_E	0.569	0.26
52_I	221_V	0.569	0.26
200_E	205_I	0.569	0.26
65_K	85_N	0.567	0.26
367_L	370_L	0.566	0.26
57_K	341_Y	0.566	0.26
147_E	157_P	0.566	0.26
55_T	352_N	0.565	0.26
205_I	254_S	0.564	0.26
305_R	358_P	0.564	0.26
37_V	233_Y	0.562	0.25
74_Q	324_P	0.562	0.25
288_A	334_S	0.561	0.25
9_I	315_V	0.561	0.25
188_A	233_Y	0.560	0.25
54_M	226_P	0.559	0.25
253_T	276_F	0.559	0.25
144_R	280_L	0.559	0.25
95_M	302_R	0.558	0.25
164_I	366_V	0.558	0.25
96_V	220_G	0.558	0.25
147_E	150_K	0.557	0.25
120_E	302_R	0.556	0.25
92_G	200_E	0.556	0.25
195_S	228_L	0.556	0.25
218_I	350_A	0.555	0.25
227_N	363_I	0.555	0.25
362_N	366_V	0.555	0.25
193_A	254_S	0.553	0.25
27_H	64_G	0.553	0.25
98_Y	120_E	0.552	0.25
321_G	348_S	0.552	0.25
53_E	77_E	0.551	0.25
72_A	284_G	0.550	0.25
37_V	89_V	0.550	0.25
175_K	337_V	0.550	0.25
298_L	359_M	0.550	0.25
8_A	11_R	0.550	0.25
160_K	281_V	0.550	0.25
80_G	83_V	0.549	0.25
335_G	361_I	0.549	0.25
129_P	275_E	0.547	0.25
217_S	278_L	0.547	0.25
22_K	151_E	0.546	0.25
73_E	174_Q	0.546	0.25
22_K	46_S	0.545	0.24
328_P	349_H	0.545	0.24
150_K	157_P	0.545	0.24
42_L	45_L	0.544	0.24
147_E	158_G	0.544	0.24
41_K	352_N	0.543	0.24
184_T	348_S	0.543	0.24
120_E	318_G	0.542	0.24
119_G	244_L	0.541	0.24
32_D	36_K	0.540	0.24
110_G	281_V	0.540	0.24
165_V	168_A	0.540	0.24
71_N	159_D	0.540	0.24
193_A	252_V	0.540	0.24
131_S	177_L	0.539	0.24
182_G	257_S	0.538	0.24
14_E	314_R	0.538	0.24
76_R	279_I	0.538	0.24
111_N	254_S	0.536	0.24
43_E	226_P	0.536	0.24
347_C	364_P	0.536	0.24
107_Q	113_V	0.536	0.24
342_K	345_L	0.534	0.24
359_M	366_V	0.533	0.24
255_G	337_V	0.533	0.24
288_A	294_L	0.533	0.24
192_D	376_S	0.532	0.24
368_E	372_N	0.532	0.24
105_Y	279_I	0.531	0.24
129_P	279_I	0.530	0.24
184_T	205_I	0.529	0.24
44_V	226_P	0.529	0.24
323_P	334_S	0.529	0.24
41_K	123_I	0.526	0.23
144_R	208_S	0.526	0.23
75_A	279_I	0.526	0.23
290_E	347_C	0.526	0.23
34_A	153_L	0.524	0.23
9_I	230_Y	0.523	0.23
121_L	244_L	0.523	0.23
255_G	272_G	0.523	0.23
18_P	166_K	0.523	0.23
21_F	184_T	0.521	0.23
258_S	269_P	0.521	0.23
311_P	330_G	0.520	0.23
122_L	164_I	0.520	0.23
13_V	186_A	0.519	0.23
92_G	182_G	0.519	0.23
170_E	296_E	0.518	0.23
25_R	360_K	0.518	0.23
18_P	127_D	0.517	0.23
92_G	220_G	0.517	0.23
12_G	200_E	0.517	0.23
167_V	211_V	0.516	0.23
76_R	102_I	0.515	0.23
309_H	329_M	0.514	0.23
53_E	56_M	0.514	0.23
287_K	291_D	0.512	0.23
34_A	237_V	0.512	0.23
28_P	41_K	0.510	0.22
209_S	214_V	0.508	0.22
292_P	296_E	0.508	0.22
107_Q	112_E	0.508	0.22
287_K	339_N	0.507	0.22
81_K	279_I	0.506	0.22
179_A	212_P	0.506	0.22
40_G	225_L	0.506	0.22
346_L	367_L	0.505	0.22
16_N	186_A	0.505	0.22
214_V	217_S	0.505	0.22
201_N	244_L	0.505	0.22
336_I	370_L	0.503	0.22
6_D	141_T	0.503	0.22
141_T	144_R	0.503	0.22
318_G	329_M	0.502	0.22
164_I	297_A	0.502	0.22
95_M	130_P	0.502	0.22
351_G	359_M	0.501	0.22
130_P	179_A	0.501	0.22
188_A	243_G	0.501	0.22
52_I	346_L	0.500	0.22
190_A	366_V	0.500	0.22

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3cf4A	2	0.8203	100	0.711	Contact Map
2g40A	2	0.4245	100	0.761	Contact Map
2h88B	1	0.5417	99.5	0.907	Contact Map
1kf6B	1	0.5495	99.4	0.916	Contact Map
4ysxB	1	0.5547	99.4	0.917	Contact Map
2wdqB	1	0.5312	99.2	0.922	Contact Map
2bs2B	1	0.526	99	0.928	Contact Map
4p6vA	1	0.7109	98.8	0.935	Contact Map
3c8yA	1	0.5339	98.7	0.937	Contact Map
2c42A	2	0.8464	98.4	0.942	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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