Q97U88 - SULSO - GREMLIN Contacts

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Q97U88 - Uncharacterized protein

UniProt:	Q97U88	Sequences: MIVKNFITGPLATNSYLVIAGKEGVIIDAGGDMSELIQTVRKEKINIRYIIATHGHFDHIMGVNQIKRDFPSSTFLINEKDLGLLKRASSMAQSFLNLLISDVTKPDGFVKEGDEIELGGEKLKIIETPGHTMGSICIIANGYIFTGDTLFYGTVGRTDLGGSEKLLRESLEKLKKLPDEIIVYPGHGPFTVLGYEKVKNPFLTMDILP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	209 (174)
Sequences:	17075 (12191)
Seq/√Len:	924.2

ECOLI - YCBL GLO2
BACSU - YQGX PKSB YOBT YYBB YQJP YFLN YRKH YTNP
HALSA - Q9HQ50 Q9HNJ2 Q9HRG5 Q9HNJ9 Q9HSD1 O54647 O54661 Q9HSH2 Q9HS22 Q9HQ42
SULSO - Q97U88 Q7LYK3 Q97VU4 Q97YZ2 Q97XZ1 Q97UV2 Q97VU0 Q97UR2 Q97WC2 Q97Y13 Q97YH8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
128_T	137_C	3.959	1.00
23_E	48_R	3.846	1.00
52_A	63_V	3.251	1.00
115_E	122_K	2.692	1.00
117_E	122_K	2.588	1.00
49_Y	76_L	2.552	1.00
112_E	173_K	2.521	1.00
123_L	140_A	2.478	1.00
51_I	138_I	2.364	1.00
115_E	124_K	2.318	1.00
125_I	136_I	2.256	1.00
179_D	197_K	2.238	1.00
25_V	49_Y	2.208	1.00
79_E	111_K	2.199	1.00
37_I	69_D	2.072	1.00
76_L	108_G	2.062	1.00
81_D	134_G	2.037	1.00
143_Y	184_Y	1.986	1.00
23_E	46_N	1.958	1.00
125_I	138_I	1.864	1.00
16_Y	184_Y	1.842	1.00
24_G	45_I	1.725	1.00
27_I	145_F	1.715	1.00
67_K	107_D	1.698	1.00
142_G	180_E	1.683	1.00
163_S	166_L	1.670	1.00
111_K	114_D	1.641	1.00
78_N	127_E	1.634	1.00
19_I	45_I	1.592	1.00
139_I	181_I	1.580	1.00
39_T	43_E	1.563	1.00
76_L	110_V	1.559	1.00
179_D	194_G	1.555	1.00
19_I	24_G	1.489	1.00
27_I	53_T	1.467	1.00
25_V	51_I	1.439	1.00
37_I	41_R	1.432	1.00
37_I	70_F	1.430	1.00
65_Q	69_D	1.411	1.00
39_T	42_K	1.403	1.00
40_V	47_I	1.391	1.00
121_E	140_A	1.366	1.00
73_S	108_G	1.348	1.00
195_Y	199_K	1.342	1.00
137_C	144_I	1.340	1.00
169_E	172_E	1.339	1.00
124_K	139_I	1.338	1.00
126_I	173_K	1.332	1.00
78_N	136_I	1.311	1.00
38_Q	42_K	1.311	1.00
139_I	144_I	1.295	1.00
63_V	75_F	1.295	1.00
47_I	72_S	1.270	1.00
64_N	68_R	1.265	1.00
108_G	114_D	1.264	1.00
49_Y	73_S	1.254	1.00
182_I	190_F	1.241	1.00
33_M	65_Q	1.232	1.00
16_Y	145_F	1.226	1.00
130_G	170_S	1.218	1.00
34_S	38_Q	1.216	1.00
126_I	139_I	1.203	1.00
137_C	174_L	1.194	1.00
132_T	135_S	1.181	1.00
47_I	70_F	1.176	1.00
128_T	170_S	1.160	1.00
79_E	109_F	1.155	1.00
166_L	169_E	1.142	1.00
41_R	69_D	1.113	1.00
64_N	67_K	1.105	1.00
82_L	109_F	1.104	1.00
67_K	75_F	1.103	1.00
149_T	174_L	1.101	1.00
183_V	191_T	1.100	1.00
113_G	124_K	1.074	1.00
112_E	127_E	1.073	1.00
173_K	176_K	1.068	1.00
133_M	166_L	1.068	1.00
29_A	50_I	1.066	1.00
24_G	47_I	1.063	1.00
164_E	168_R	1.052	1.00
33_M	62_G	1.048	1.00
193_L	196_E	1.046	1.00
135_S	147_G	1.044	1.00
38_Q	41_R	1.041	1.00
172_E	176_K	1.040	1.00
26_I	47_I	1.037	1.00
143_Y	182_I	1.032	1.00
110_V	136_I	1.028	1.00
80_K	127_E	1.026	1.00
144_I	177_L	1.016	1.00
137_C	149_T	0.984	1.00
139_I	142_G	0.982	1.00
128_T	149_T	0.969	1.00
17_L	39_T	0.965	1.00
121_E	141_N	0.965	1.00
33_M	37_I	0.964	1.00
175_K	199_K	0.958	1.00
53_T	147_G	0.952	1.00
77_I	81_D	0.950	1.00
146_T	183_V	0.948	1.00
164_E	167_L	0.941	1.00
65_Q	68_R	0.938	1.00
117_E	120_G	0.935	1.00
20_A	120_G	0.933	1.00
149_T	167_L	0.918	1.00
51_I	123_L	0.904	1.00
20_A	119_G	0.903	1.00
25_V	118_L	0.891	1.00
191_T	196_E	0.890	1.00
165_K	169_E	0.879	1.00
20_A	23_E	0.879	1.00
139_I	177_L	0.878	1.00
23_E	49_Y	0.876	1.00
157_R	160_L	0.876	1.00
26_I	29_A	0.875	1.00
158_T	164_E	0.865	1.00
32_D	35_E	0.864	1.00
18_V	27_I	0.861	1.00
133_M	161_G	0.861	1.00
144_I	183_V	0.860	1.00
178_P	181_I	0.860	1.00
172_E	175_K	0.852	1.00
149_T	170_S	0.852	1.00
182_I	192_V	0.852	1.00
52_A	75_F	0.843	1.00
55_G	81_D	0.835	1.00
57_F	61_M	0.833	1.00
194_G	198_V	0.829	1.00
118_L	121_E	0.829	1.00
168_R	172_E	0.826	1.00
17_L	24_G	0.815	1.00
184_Y	190_F	0.811	1.00
73_S	107_D	0.809	1.00
175_K	197_K	0.807	1.00
55_G	77_I	0.804	1.00
152_Y	189_P	0.800	1.00
25_V	123_L	0.799	1.00
183_V	193_L	0.798	1.00
171_L	175_K	0.796	1.00
29_A	63_V	0.789	1.00
35_E	39_T	0.788	1.00
152_Y	199_K	0.783	1.00
13_T	30_G	0.781	1.00
15_S	36_L	0.780	1.00
158_T	167_L	0.779	1.00
77_I	106_P	0.778	1.00
135_S	149_T	0.771	1.00
32_D	36_L	0.769	1.00
153_G	195_Y	0.767	1.00
124_K	177_L	0.767	1.00
123_L	138_I	0.767	1.00
153_G	199_K	0.765	1.00
14_N	188_G	0.762	1.00
110_V	125_I	0.762	1.00
110_V	138_I	0.762	1.00
36_L	39_T	0.758	1.00
128_T	135_S	0.751	1.00
35_E	38_Q	0.746	1.00
24_G	48_R	0.738	1.00
13_T	186_G	0.735	1.00
17_L	26_I	0.735	1.00
174_L	193_L	0.734	1.00
63_V	67_K	0.732	1.00
146_T	185_P	0.713	1.00
55_G	134_G	0.711	1.00
19_I	43_E	0.709	1.00
52_A	60_I	0.706	1.00
104_T	107_D	0.705	1.00
145_F	184_Y	0.702	1.00
140_A	143_Y	0.701	1.00
106_P	109_F	0.700	1.00
126_I	137_C	0.699	1.00
139_I	179_D	0.694	1.00
50_I	63_V	0.691	1.00
81_D	132_T	0.691	1.00
127_E	136_I	0.691	1.00
19_I	39_T	0.690	1.00
33_M	36_L	0.685	1.00
127_E	173_K	0.685	1.00
50_I	72_S	0.683	1.00
16_Y	186_G	0.682	1.00
26_I	66_I	0.677	1.00
79_E	82_L	0.672	1.00
49_Y	108_G	0.669	1.00
34_S	65_Q	0.669	1.00
11_L	57_F	0.667	1.00
169_E	173_K	0.652	1.00
62_G	65_Q	0.651	1.00
192_V	195_Y	0.651	1.00
27_I	51_I	0.650	1.00
14_N	189_P	0.648	1.00
24_G	40_V	0.646	1.00
67_K	71_P	0.644	1.00
151_F	154_T	0.643	1.00
15_S	30_G	0.643	1.00
19_I	22_K	0.643	1.00
142_G	178_P	0.639	1.00
167_L	171_L	0.638	1.00
78_N	81_D	0.638	1.00
14_N	186_G	0.637	1.00
113_G	173_K	0.632	1.00
155_V	158_T	0.631	1.00
150_L	183_V	0.629	1.00
77_I	82_L	0.626	1.00
168_R	175_K	0.619	1.00
34_S	37_I	0.619	1.00
20_A	121_E	0.611	1.00
161_G	167_L	0.608	1.00
56_H	186_G	0.607	1.00
153_G	156_G	0.606	1.00
24_G	46_N	0.605	1.00
66_I	70_F	0.604	1.00
151_F	156_G	0.602	1.00
110_V	114_D	0.602	1.00
18_V	140_A	0.602	1.00
36_L	40_V	0.602	1.00
26_I	40_V	0.600	1.00
110_V	116_I	0.599	1.00
21_G	120_G	0.599	1.00
130_G	158_T	0.597	1.00
51_I	136_I	0.587	1.00
27_I	138_I	0.586	1.00
142_G	181_I	0.582	1.00
9_G	15_S	0.579	1.00
148_D	187_H	0.577	1.00
129_P	170_S	0.577	1.00
23_E	119_G	0.567	1.00
76_L	107_D	0.567	1.00
41_R	44_K	0.564	1.00
111_K	127_E	0.564	1.00
50_I	66_I	0.564	1.00
50_I	75_F	0.561	1.00
18_V	25_V	0.555	1.00
60_I	63_V	0.555	1.00
183_V	194_G	0.554	1.00
176_K	193_L	0.552	1.00
152_Y	191_T	0.544	1.00
22_K	44_K	0.543	1.00
195_Y	198_V	0.541	1.00
139_I	178_P	0.539	1.00
144_I	193_L	0.539	1.00
100_I	104_T	0.539	1.00
13_T	59_H	0.535	1.00
40_V	45_I	0.534	1.00
53_T	138_I	0.533	1.00
114_D	125_I	0.531	1.00
22_K	119_G	0.528	1.00
17_L	40_V	0.526	1.00
73_S	76_L	0.524	1.00
76_L	114_D	0.523	1.00
151_F	155_V	0.523	1.00
179_D	183_V	0.518	1.00
68_R	71_P	0.515	1.00
9_G	12_A	0.504	1.00
126_I	177_L	0.504	1.00
40_V	70_F	0.503	1.00
118_L	123_L	0.502	1.00
20_A	118_L	0.500	1.00
22_K	46_N	0.500	1.00
31_G	62_G	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3r2uA	4	0.933	100	0.254	Contact Map
3tp9A	2	0.9378	100	0.254	Contact Map
4yslA	2	0.9904	100	0.27	Contact Map
4efzA	2	0.9904	100	0.273	Contact Map
2xf4A	2	0.9761	100	0.279	Contact Map
1qh5A	1	0.8852	100	0.281	Contact Map
2qedA	1	0.89	100	0.281	Contact Map
2p18A	1	0.8947	100	0.287	Contact Map
1xm8A	1	0.8947	100	0.291	Contact Map
2zwrA	1	0.9713	100	0.308	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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