Q97U72 - SULSO - GREMLIN Contacts

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Q97U72 - NADH oxidase, putative

UniProt:	Q97U72	Sequences: MQGERVVILGGGFAGIAAKLVYPNAILVDEKDFMVVTPRLVEVIEKNLPLSYALIHRKVDVKAKILKVDFKEKKVITTNGEIKFDKLIIALGYEQDLSKIKGAENYGIGFTLENIEKIKSFKEGSVVTILGGGALGVELAGALRKRGHIVNLVEAESRLLPYLVSDFSREVQRVLENQGVNVILSAKVEEVNQNEVVTTQGRIRSDYVIFSAGFSGPKIIKEMALSNKNNRMLVDRYLRSIDYDFVYGAGDCANFKDGFIPQSAQVSLQAGEVAMNNAIKDEKVEFKPVQRAIVLKIGEDYIGLIKNTVISGPIASFIKSFAISSLEGKVKKVNRLILAVFTRGVTSAYF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	350 (288)
Sequences:	42171 (29690)
Seq/√Len:	1749.5

ECOLI - DHNA RCLA STHA DLDH GSHR HCAD NORW TRXB NIRB PRET AHPF
BACSU - YUMB YJLD DLDH2 YUTJ DLDH1 DLDH3 YPDA FENR2 FENR1 CZCO NASB NASD DHNA TRXB GLTB
HALSA - Q9HR27 Q9HSN0 DLDH Q9HP48 P82854
SULSO - Q97U72 Q97UP4 Q97ZB4 Q97VD9 Q97WG1 Q97WE3 Q97YT2 Q97XZ3 Q97Z19 Q97VJ3 Q97Y24 Q97UV0 FENR Q97VQ4 Q97V69 Q97W27 Q97Z14

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
128_T	205_S	4.351	1.00
30_E	64_K	4.023	1.00
5_R	24_N	3.335	1.00
126_V	149_I	3.114	1.00
151_N	183_I	3.056	1.00
5_R	85_D	2.687	1.00
192_N	197_V	2.617	1.00
73_K	245_F	2.613	1.00
235_D	239_R	2.585	1.00
6_V	22_Y	2.561	1.00
149_I	181_N	2.487	1.00
190_E	197_V	2.479	1.00
4_E	26_I	2.436	1.00
18_A	88_I	2.425	1.00
28_V	82_I	2.422	1.00
96_D	215_S	2.392	1.00
172_Q	176_E	2.363	1.00
126_V	151_N	2.307	1.00
128_T	153_V	2.269	1.00
70_F	243_Y	2.263	1.00
151_N	181_N	2.232	1.00
86_K	245_F	2.208	1.00
155_A	187_K	2.196	1.00
226_S	233_L	2.143	1.00
183_I	202_R	2.129	1.00
7_V	28_V	2.031	1.00
101_K	190_E	2.025	1.00
84_F	87_L	2.022	1.00
126_V	206_D	2.022	1.00
5_R	26_I	2.016	1.00
7_V	84_F	2.013	1.00
186_A	200_Q	2.009	1.00
157_S	185_S	2.002	1.00
67_K	76_I	1.922	1.00
63_A	79_N	1.871	1.00
94_E	217_P	1.870	1.00
14_A	249_A	1.851	1.00
86_K	247_Y	1.847	1.00
227_N	231_R	1.821	1.00
189_E	197_V	1.810	1.00
247_Y	277_N	1.763	1.00
69_D	72_E	1.751	1.00
74_K	83_K	1.708	1.00
7_V	82_I	1.683	1.00
219_I	222_E	1.671	1.00
105_N	193_Q	1.670	1.00
88_I	278_A	1.667	1.00
86_K	278_A	1.665	1.00
94_E	215_S	1.654	1.00
91_L	252_C	1.619	1.00
187_K	199_T	1.611	1.00
236_R	285_E	1.610	1.00
128_T	196_V	1.608	1.00
7_V	26_I	1.572	1.00
7_V	75_V	1.564	1.00
63_A	78_T	1.557	1.00
153_V	203_I	1.548	1.00
183_I	186_A	1.528	1.00
32_D	62_K	1.510	1.00
111_T	114_N	1.465	1.00
126_V	204_R	1.434	1.00
274_A	278_A	1.419	1.00
125_S	206_D	1.419	1.00
6_V	88_I	1.416	1.00
11_G	29_D	1.403	1.00
158_R	168_S	1.397	1.00
34_M	37_T	1.395	1.00
14_A	267_S	1.384	1.00
19_K	27_L	1.384	1.00
21_V	272_E	1.383	1.00
144_R	180_V	1.383	1.00
132_G	154_E	1.382	1.00
186_A	202_R	1.366	1.00
126_V	148_H	1.364	1.00
226_S	241_I	1.362	1.00
232_M	248_G	1.358	1.00
239_R	244_D	1.349	1.00
189_E	199_T	1.348	1.00
174_V	177_N	1.347	1.00
26_I	60_D	1.333	1.00
9_L	65_I	1.327	1.00
154_E	184_L	1.326	1.00
191_V	208_V	1.322	1.00
127_V	148_H	1.322	1.00
127_V	143_L	1.322	1.00
49_P	52_Y	1.310	1.00
67_K	222_E	1.309	1.00
172_Q	184_L	1.304	1.00
198_T	203_I	1.302	1.00
115_I	118_I	1.296	1.00
4_E	86_K	1.284	1.00
186_A	199_T	1.279	1.00
169_R	172_Q	1.272	1.00
275_M	279_I	1.270	1.00
174_V	178_Q	1.260	1.00
24_N	60_D	1.250	1.00
88_I	249_A	1.233	1.00
233_L	241_I	1.232	1.00
66_L	76_I	1.224	1.00
127_V	207_Y	1.217	1.00
271_G	275_M	1.207	1.00
183_I	203_I	1.206	1.00
8_I	19_K	1.202	1.00
249_A	274_A	1.200	1.00
26_I	82_I	1.191	1.00
151_N	205_S	1.177	1.00
273_V	277_N	1.173	1.00
165_S	169_R	1.173	1.00
77_T	82_I	1.169	1.00
70_F	246_V	1.168	1.00
237_Y	277_N	1.166	1.00
137_V	152_L	1.162	1.00
73_K	77_T	1.156	1.00
9_L	91_L	1.154	1.00
151_N	203_I	1.149	1.00
234_V	253_A	1.145	1.00
50_L	54_L	1.143	1.00
124_G	148_H	1.139	1.00
49_P	53_A	1.136	1.00
144_R	149_I	1.133	1.00
57_R	60_D	1.119	1.00
237_Y	285_E	1.117	1.00
39_R	42_E	1.115	1.00
28_V	65_I	1.103	1.00
93_Y	214_F	1.102	1.00
4_E	7_V	1.090	1.00
113_E	116_E	1.086	1.00
219_I	223_M	1.084	1.00
64_K	78_T	1.077	1.00
69_D	76_I	1.077	1.00
234_V	248_G	1.074	1.00
159_L	184_L	1.066	1.00
107_G	193_Q	1.062	1.00
140_A	152_L	1.057	1.00
170_E	174_V	1.056	1.00
90_A	249_A	1.053	1.00
55_I	58_K	1.052	1.00
121_F	148_H	1.050	1.00
4_E	24_N	1.050	1.00
145_K	178_Q	1.049	1.00
8_I	15_G	1.047	1.00
21_V	276_N	1.045	1.00
158_R	165_S	1.040	1.00
69_D	74_K	1.039	1.00
6_V	86_K	1.035	1.00
87_L	246_V	1.031	1.00
130_L	208_V	1.028	1.00
63_A	77_T	1.026	1.00
238_L	253_A	1.025	1.00
114_N	117_K	1.025	1.00
173_R	176_E	1.012	1.00
5_R	83_K	1.003	1.00
234_V	238_L	0.999	1.00
23_P	58_K	0.992	1.00
227_N	233_L	0.991	1.00
186_A	198_T	0.981	1.00
173_R	177_N	0.980	1.00
119_K	122_K	0.979	1.00
69_D	73_K	0.977	1.00
26_I	61_V	0.974	1.00
9_L	89_I	0.970	1.00
130_L	212_A	0.959	1.00
11_G	27_L	0.956	1.00
18_A	249_A	0.946	1.00
205_S	208_V	0.936	1.00
266_V	270_A	0.932	1.00
88_I	274_A	0.929	1.00
70_F	73_K	0.928	1.00
116_E	119_K	0.927	1.00
22_Y	275_M	0.921	1.00
99_K	103_A	0.921	1.00
229_N	254_N	0.919	1.00
4_E	60_D	0.917	1.00
48_L	53_A	0.916	1.00
247_Y	278_A	0.916	1.00
17_A	271_G	0.916	1.00
141_G	145_K	0.913	1.00
227_N	254_N	0.912	1.00
41_V	44_I	0.909	1.00
50_L	53_A	0.906	1.00
65_I	75_V	0.904	1.00
243_Y	246_V	0.899	1.00
130_L	210_F	0.899	1.00
46_K	53_A	0.898	1.00
89_I	246_V	0.895	1.00
158_R	172_Q	0.888	1.00
170_E	173_R	0.888	1.00
45_E	48_L	0.885	1.00
247_Y	274_A	0.884	1.00
122_K	146_R	0.881	1.00
248_G	252_C	0.874	1.00
153_V	183_I	0.872	1.00
144_R	178_Q	0.870	1.00
239_R	277_N	0.868	1.00
129_I	140_A	0.868	1.00
106_Y	193_Q	0.868	1.00
21_V	275_M	0.867	1.00
45_E	49_P	0.867	1.00
192_N	195_E	0.867	1.00
163_L	293_I	0.866	1.00
238_L	274_A	0.859	1.00
77_T	80_G	0.857	1.00
22_Y	25_A	0.853	1.00
28_V	77_T	0.845	1.00
40_L	43_V	0.845	1.00
48_L	52_Y	0.844	1.00
169_R	173_R	0.844	1.00
272_E	276_N	0.837	1.00
63_A	66_L	0.834	1.00
18_A	271_G	0.830	1.00
100_I	103_A	0.830	1.00
68_V	87_L	0.829	1.00
137_V	297_I	0.829	1.00
67_K	73_K	0.828	1.00
240_S	248_G	0.826	1.00
17_A	268_L	0.820	1.00
19_K	25_A	0.815	1.00
48_L	51_S	0.814	1.00
18_A	275_M	0.811	1.00
274_A	277_N	0.809	1.00
89_I	252_C	0.807	1.00
172_Q	182_V	0.807	1.00
239_R	247_Y	0.803	1.00
66_L	78_T	0.800	1.00
248_G	253_A	0.799	1.00
194_N	204_R	0.798	1.00
55_I	60_D	0.796	1.00
153_V	198_T	0.796	1.00
113_E	117_K	0.796	1.00
112_L	116_E	0.795	1.00
46_K	49_P	0.792	1.00
228_K	233_L	0.786	1.00
31_K	40_L	0.785	1.00
17_A	21_V	0.784	1.00
168_S	172_Q	0.783	1.00
154_E	161_P	0.779	1.00
239_R	245_F	0.778	1.00
76_I	81_E	0.770	1.00
103_A	210_F	0.767	1.00
105_N	108_I	0.766	1.00
269_Q	272_E	0.765	1.00
47_N	50_L	0.758	1.00
74_K	77_T	0.755	1.00
98_S	210_F	0.754	1.00
114_N	118_I	0.753	1.00
240_S	243_Y	0.751	1.00
102_G	190_E	0.750	1.00
218_K	221_K	0.750	1.00
158_R	169_R	0.749	1.00
18_A	274_A	0.748	1.00
95_Q	98_S	0.748	1.00
156_E	161_P	0.746	1.00
238_L	273_V	0.743	1.00
144_R	179_G	0.742	1.00
15_G	19_K	0.736	1.00
249_A	271_G	0.735	1.00
5_R	82_I	0.733	1.00
129_I	136_G	0.732	1.00
102_G	105_N	0.732	1.00
40_L	44_I	0.729	1.00
147_G	150_V	0.727	1.00
239_R	243_Y	0.726	1.00
267_S	271_G	0.723	1.00
63_A	67_K	0.720	1.00
128_T	203_I	0.719	1.00
63_A	81_E	0.718	1.00
49_P	54_L	0.718	1.00
77_T	81_E	0.717	1.00
8_I	18_A	0.717	1.00
6_V	278_A	0.716	1.00
232_M	252_C	0.715	1.00
15_G	90_A	0.714	1.00
34_M	38_P	0.710	1.00
112_L	115_I	0.706	1.00
265_Q	269_Q	0.705	1.00
42_E	45_E	0.704	1.00
128_T	208_V	0.701	1.00
67_K	70_F	0.697	1.00
145_K	298_G	0.695	1.00
17_A	20_L	0.693	1.00
231_R	262_Q	0.691	1.00
130_L	188_V	0.690	1.00
136_G	154_E	0.690	1.00
139_L	142_A	0.684	1.00
220_I	223_M	0.683	1.00
113_E	118_I	0.682	1.00
97_L	210_F	0.681	1.00
84_F	245_F	0.679	1.00
96_D	99_K	0.678	1.00
263_S	266_V	0.677	1.00
167_F	170_E	0.676	1.00
153_V	186_A	0.675	1.00
261_P	266_V	0.675	1.00
142_A	145_K	0.672	1.00
132_G	159_L	0.672	1.00
7_V	87_L	0.664	1.00
22_Y	278_A	0.663	1.00
183_I	198_T	0.662	1.00
235_D	238_L	0.655	1.00
276_N	281_D	0.653	1.00
277_N	283_K	0.652	1.00
126_V	205_S	0.649	1.00
198_T	202_R	0.646	1.00
111_T	115_I	0.645	1.00
20_L	57_R	0.644	1.00
28_V	63_A	0.642	1.00
181_N	203_I	0.641	1.00
159_L	172_Q	0.640	1.00
237_Y	283_K	0.639	1.00
30_E	217_P	0.637	1.00
128_T	151_N	0.631	1.00
19_K	59_V	0.629	1.00
139_L	209_I	0.628	1.00
152_L	182_V	0.627	1.00
157_S	165_S	0.627	1.00
295_L	298_G	0.625	1.00
198_T	201_G	0.624	1.00
39_R	43_V	0.622	1.00
135_L	211_S	0.620	1.00
17_A	272_E	0.618	1.00
67_K	71_K	0.617	1.00
255_F	261_P	0.616	1.00
48_L	54_L	0.616	1.00
74_K	81_E	0.616	1.00
175_L	182_V	0.613	1.00
118_I	207_Y	0.612	1.00
237_Y	282_E	0.612	1.00
67_K	87_L	0.610	1.00
115_I	119_K	0.609	1.00
141_G	144_R	0.609	1.00
110_F	210_F	0.608	1.00
140_A	180_V	0.607	1.00
121_F	143_L	0.604	1.00
119_K	207_Y	0.602	1.00
61_V	65_I	0.602	1.00
260_I	266_V	0.601	1.00
191_V	196_V	0.599	1.00
264_A	267_S	0.599	1.00
24_N	85_D	0.598	1.00
42_E	47_N	0.596	1.00
91_L	219_I	0.593	1.00
101_K	105_N	0.593	1.00
268_L	272_E	0.590	1.00
230_N	254_N	0.588	1.00
56_H	59_V	0.588	1.00
71_K	74_K	0.587	1.00
293_I	298_G	0.587	1.00
137_V	175_L	0.585	1.00
116_E	120_S	0.585	1.00
115_I	143_L	0.585	1.00
119_K	146_R	0.582	1.00
8_I	90_A	0.582	1.00
292_A	295_L	0.582	1.00
14_A	90_A	0.579	1.00
38_P	41_V	0.579	1.00
104_E	108_I	0.579	1.00
188_V	196_V	0.578	1.00
181_N	184_L	0.577	1.00
140_A	150_V	0.577	1.00
18_A	22_Y	0.575	1.00
185_S	199_T	0.575	1.00
51_S	54_L	0.573	1.00
120_S	207_Y	0.571	1.00
223_M	243_Y	0.571	1.00
97_L	104_E	0.570	1.00
129_I	209_I	0.570	1.00
40_L	113_E	0.569	1.00
204_R	207_Y	0.567	1.00
269_Q	273_V	0.567	1.00
89_I	248_G	0.566	1.00
41_V	45_E	0.566	1.00
112_L	118_I	0.565	1.00
96_D	212_A	0.564	1.00
13_F	264_A	0.563	1.00
139_L	143_L	0.561	1.00
65_I	68_V	0.561	1.00
166_D	169_R	0.557	1.00
125_S	149_I	0.556	1.00
13_F	17_A	0.555	1.00
227_N	230_N	0.554	1.00
232_M	236_R	0.554	1.00
7_V	73_K	0.552	1.00
158_R	161_P	0.549	1.00
65_I	69_D	0.548	1.00
142_A	146_R	0.547	1.00
286_F	289_V	0.547	1.00
22_Y	279_I	0.547	1.00
94_E	218_K	0.547	1.00
24_N	58_K	0.546	1.00
125_S	207_Y	0.545	1.00
290_Q	296_K	0.545	1.00
287_K	290_Q	0.544	1.00
125_S	148_H	0.542	1.00
8_I	27_L	0.541	1.00
291_R	294_V	0.539	1.00
39_R	44_I	0.538	1.00
253_A	270_A	0.538	1.00
136_G	211_S	0.537	1.00
138_E	141_G	0.531	1.00
46_K	54_L	0.530	1.00
89_I	219_I	0.527	1.00
103_A	107_G	0.523	1.00
106_Y	109_G	0.522	1.00
216_G	231_R	0.521	1.00
291_R	295_L	0.521	1.00
225_L	243_Y	0.521	1.00
71_K	243_Y	0.520	1.00
127_V	209_I	0.519	1.00
181_N	202_R	0.519	1.00
273_V	286_F	0.518	1.00
154_E	159_L	0.518	1.00
124_G	206_D	0.517	1.00
97_L	103_A	0.515	1.00
56_H	60_D	0.515	1.00
171_V	297_I	0.515	1.00
165_S	168_S	0.514	1.00
13_F	268_L	0.513	1.00
103_A	191_V	0.511	1.00
117_K	120_S	0.511	1.00
55_I	59_V	0.510	1.00
288_P	292_A	0.510	1.00
6_V	18_A	0.510	1.00
46_K	51_S	0.509	1.00
23_P	59_V	0.509	1.00
292_A	296_K	0.507	1.00
233_L	254_N	0.507	1.00
234_V	237_Y	0.507	1.00
66_L	69_D	0.507	1.00
4_E	85_D	0.506	1.00
273_V	285_E	0.506	1.00
218_K	222_E	0.506	1.00
6_V	275_M	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
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HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4g6hA	2	0.9914	100	0.317	Contact Map
4nwzA	2	0.9657	100	0.368	Contact Map
3iwaA	2	0.88	100	0.38	Contact Map
1lvlA	2	0.96	100	0.381	Contact Map
1ojtA	2	0.9686	100	0.381	Contact Map
3l8kA	3	0.9543	100	0.383	Contact Map
2a8xA	2	0.9686	100	0.383	Contact Map
3dk9A	2	0.9657	100	0.384	Contact Map
3cgbA	2	0.9829	100	0.387	Contact Map
2hqmA	2	0.9629	100	0.387	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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