Q97U68 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97U68 - Second ORF in transposon ISC1904

UniProt:	Q97U68	Sequences: MLKNLRIRKFEPEEEYVYFTYSIKNDKREKSKELIKEYGTLLQKAIDYLWSLTKIQVRKNGNYKITLPKKKEVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPGVKNAYVRIKTTLRKVVGESVRITVRPYEYITFSWSNLWFSRRVRELELGEPIIKEEKVYLPFRYKLPWATPLNFLAIDSNLYTLDAYDGEKFITISLKQLYSLKYSMEVKRAKVQSFASKHTKRGRELLRKYSHRERNRVLDFVRKFVNALLDLYPMTFFAVEKLSKESMFKDANGSLSRKISRTVWGSIHRVLKYKAPLYGSFVKEVNPHFTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRGMNGFPRDFGEAQGLRIDIKYHEIP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	423 (342)
Sequences:	4370 (2796)
Seq/√Len:	151.2

ECOLI - INSQ
HALSA - Q9HSW9 Q9HHJ9 Q9HM87 Q9HSW7 Q9HHG8 Q9HSZ6 Q9HSD4 Q9HHU6 Q9HSY4 Q9HHX8
SULSO - Q97U68 Q97UQ8 Q97YI5 Q97Z61 Q97YW9 Q97YU1 Q97XQ0 Q97U51 Q97XB6 Q97Y48 Q97XQ8 Q97XP1 Q97YI2 Q97V47 Q97V25 Q97Y44 Q97YW4 Q97WZ3 Q97X39 Q97Y67 Q97XA4 Q97V53 Q97WY6 Q7LXH2 Q7LXD9 Q7LXH6 Y2105 Q97YF7 Q7LX59 Q97U09

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
263_D	267_K	5.407	1.00
287_S	290_S	4.404	1.00
339_P	366_N	4.187	1.00
319_A	326_V	3.718	1.00
205_L	311_I	3.068	1.00
312_H	328_E	2.976	1.00
283_V	315_L	2.919	1.00
19_F	321_L	2.851	1.00
270_N	274_D	2.744	1.00
310_S	314_V	2.731	1.00
316_K	328_E	2.477	1.00
333_F	336_R	2.454	1.00
337_S	344_V	2.430	1.00
172_P	181_L	2.400	1.00
329_V	371_I	2.385	1.00
310_S	313_R	2.383	1.00
273_L	319_A	2.376	1.00
311_I	315_L	2.312	1.00
225_K	301_R	2.247	1.00
292_F	304_S	2.230	1.00
281_F	319_A	2.171	1.00
353_E	360_K	2.118	1.00
283_V	326_V	2.100	1.00
170_G	186_K	2.096	1.00
224_L	260_R	2.064	1.00
266_R	314_V	2.059	1.00
334_T	371_I	2.056	1.00
54_K	119_K	2.055	1.00
231_K	246_G	2.047	1.00
51_S	55_I	2.028	1.00
266_R	317_Y	2.009	1.00
28_R	31_S	1.965	1.00
269_V	314_V	1.948	1.00
49_L	96_I	1.937	1.00
297_G	300_S	1.927	1.00
36_K	179_V	1.921	1.00
205_L	264_F	1.914	1.00
341_C	357_C	1.896	1.00
262_L	310_S	1.878	1.00
37_E	86_H	1.860	1.00
246_G	250_L	1.852	1.00
265_V	314_V	1.820	1.00
350_K	363_R	1.812	1.00
340_R	359_F	1.796	1.00
241_K	244_K	1.774	1.00
352_F	361_L	1.762	1.00
266_R	318_K	1.758	1.00
338_C	341_C	1.757	1.00
316_K	320_P	1.751	1.00
50_W	99_A	1.750	1.00
341_C	354_C	1.741	1.00
338_C	357_C	1.724	1.00
354_C	357_C	1.708	1.00
265_V	310_S	1.673	1.00
244_K	247_R	1.671	1.00
266_R	269_V	1.667	1.00
283_V	328_E	1.658	1.00
338_C	354_C	1.618	1.00
67_L	71_K	1.617	1.00
283_V	312_H	1.602	1.00
231_K	234_K	1.599	1.00
35_I	179_V	1.583	1.00
44_K	83_K	1.569	1.00
198_I	206_D	1.568	1.00
33_E	37_E	1.547	1.00
195_F	372_Y	1.541	1.00
20_T	182_P	1.521	1.00
207_A	365_L	1.517	1.00
68_P	71_K	1.514	1.00
285_K	328_E	1.509	1.00
351_T	360_K	1.508	1.00
343_F	355_E	1.503	1.00
346_R	349_G	1.450	1.00
347_K	350_K	1.449	1.00
277_P	324_S	1.442	1.00
32_K	36_K	1.434	1.00
49_L	99_A	1.429	1.00
100_F	104_K	1.428	1.00
352_F	359_F	1.411	1.00
369_L	373_L	1.402	1.00
255_H	259_N	1.402	1.00
65_I	70_K	1.394	1.00
269_V	318_K	1.373	1.00
39_G	179_V	1.368	1.00
68_P	72_E	1.364	1.00
105_S	117_I	1.357	1.00
316_K	326_V	1.355	1.00
204_T	207_A	1.354	1.00
235_V	247_R	1.342	1.00
269_V	317_Y	1.340	1.00
231_K	253_Y	1.340	1.00
141_V	145_V	1.335	1.00
284_E	331_P	1.325	1.00
216_I	219_K	1.320	1.00
178_K	255_H	1.315	1.00
294_D	300_S	1.310	1.00
103_L	119_K	1.298	1.00
69_K	72_E	1.287	1.00
104_K	108_K	1.281	1.00
196_L	208_Y	1.279	1.00
208_Y	212_K	1.261	1.00
303_I	308_W	1.259	1.00
75_K	78_R	1.251	1.00
90_H	130_K	1.245	1.00
195_F	280_F	1.239	1.00
176_E	255_H	1.232	1.00
228_M	254_S	1.227	1.00
273_L	322_Y	1.223	1.00
98_D	128_R	1.220	1.00
365_L	369_L	1.218	1.00
55_I	59_K	1.215	1.00
144_T	150_Y	1.215	1.00
109_R	117_I	1.214	1.00
329_V	374_K	1.199	1.00
287_S	331_P	1.199	1.00
29_E	32_K	1.194	1.00
269_V	311_I	1.174	1.00
101_S	105_S	1.167	1.00
109_R	118_E	1.166	1.00
110_A	117_I	1.165	1.00
54_K	58_R	1.161	1.00
339_P	369_L	1.160	1.00
66_T	69_K	1.160	1.00
90_H	132_T	1.158	1.00
271_A	275_L	1.157	1.00
42_L	95_A	1.141	1.00
224_L	257_E	1.134	1.00
196_L	276_Y	1.133	1.00
232_R	236_Q	1.130	1.00
142_R	150_Y	1.126	1.00
197_A	372_Y	1.115	0.99
339_P	361_L	1.113	0.99
198_I	208_Y	1.112	0.99
94_K	97_N	1.109	0.99
228_M	250_L	1.107	0.99
200_S	308_W	1.106	0.99
361_L	369_L	1.104	0.99
337_S	374_K	1.102	0.99
262_L	314_V	1.101	0.99
258_R	262_L	1.100	0.99
314_V	317_Y	1.095	0.99
334_T	374_K	1.093	0.99
78_R	92_V	1.093	0.99
200_S	312_H	1.092	0.99
274_D	322_Y	1.089	0.99
127_V	131_T	1.083	0.99
143_I	181_L	1.077	0.99
347_K	363_R	1.071	0.99
265_V	311_I	1.070	0.99
269_V	315_L	1.069	0.99
202_L	306_T	1.067	0.99
52_L	73_V	1.061	0.99
105_S	110_A	1.052	0.99
345_S	349_G	1.052	0.99
143_I	172_P	1.047	0.99
232_R	250_L	1.046	0.99
138_G	141_V	1.035	0.99
46_I	95_A	1.034	0.99
318_K	321_L	1.033	0.99
227_S	231_K	1.033	0.99
265_V	269_V	1.031	0.99
213_F	362_D	1.030	0.99
66_T	70_K	1.027	0.99
273_L	281_F	1.026	0.99
270_N	322_Y	1.024	0.99
336_R	346_R	1.019	0.99
56_Q	60_N	1.014	0.99
133_L	146_R	1.013	0.99
21_Y	185_Y	1.013	0.99
285_K	331_P	1.011	0.99
60_N	63_Y	1.009	0.99
88_A	91_Y	1.009	0.99
282_A	371_I	1.004	0.99
336_R	345_S	1.000	0.99
27_K	31_S	0.999	0.99
239_A	243_T	0.999	0.99
57_V	61_G	0.997	0.99
235_V	250_L	0.990	0.99
280_F	325_F	0.988	0.99
127_V	130_K	0.983	0.99
273_L	324_S	0.983	0.99
94_K	128_R	0.981	0.99
336_R	344_V	0.977	0.99
374_K	379_P	0.976	0.99
50_W	103_L	0.972	0.99
272_L	281_F	0.968	0.98
294_D	297_G	0.968	0.98
243_T	247_R	0.966	0.98
361_L	365_L	0.966	0.98
313_R	316_K	0.964	0.98
54_K	103_L	0.964	0.98
349_G	363_R	0.959	0.98
231_K	250_L	0.959	0.98
288_K	309_G	0.956	0.98
175_K	178_K	0.955	0.98
65_I	69_K	0.950	0.98
343_F	356_R	0.949	0.98
135_K	138_G	0.949	0.98
294_D	298_S	0.946	0.98
333_F	374_K	0.946	0.98
105_S	109_R	0.943	0.98
40_T	43_Q	0.941	0.98
220_Q	260_R	0.937	0.98
350_K	362_D	0.937	0.98
207_A	213_F	0.932	0.98
231_K	249_L	0.931	0.98
46_I	102_I	0.931	0.98
133_L	136_V	0.929	0.98
70_K	74_Y	0.929	0.98
67_L	97_N	0.928	0.98
32_K	179_V	0.924	0.98
44_K	48_Y	0.921	0.98
206_D	268_F	0.920	0.98
228_M	257_E	0.917	0.98
72_E	75_K	0.916	0.98
195_F	282_A	0.915	0.98
340_R	369_L	0.914	0.98
365_L	368_S	0.914	0.98
339_P	359_F	0.908	0.98
46_I	99_A	0.906	0.98
228_M	236_Q	0.905	0.98
192_P	277_P	0.905	0.98
24_K	178_K	0.904	0.98
106_W	120_P	0.899	0.98
280_F	327_K	0.897	0.98
345_S	352_F	0.886	0.97
232_R	254_S	0.882	0.97
204_T	215_T	0.881	0.97
249_L	252_K	0.878	0.97
339_P	373_L	0.878	0.97
90_H	94_K	0.877	0.97
339_P	367_A	0.874	0.97
331_P	334_T	0.869	0.97
196_L	209_D	0.867	0.97
53_T	70_K	0.863	0.97
135_K	144_T	0.862	0.97
90_H	131_T	0.859	0.97
98_D	173_I	0.859	0.97
71_K	75_K	0.858	0.97
253_Y	257_E	0.856	0.97
65_I	74_Y	0.856	0.97
319_A	324_S	0.856	0.97
70_K	73_V	0.854	0.97
105_S	108_K	0.850	0.97
369_L	372_Y	0.849	0.97
265_V	307_V	0.849	0.97
106_W	119_K	0.848	0.97
351_T	361_L	0.845	0.96
18_Y	184_R	0.843	0.96
220_Q	224_L	0.841	0.96
93_D	97_N	0.839	0.96
174_I	181_L	0.836	0.96
235_V	246_G	0.836	0.96
200_S	206_D	0.836	0.96
229_E	233_A	0.829	0.96
128_R	171_E	0.828	0.96
229_E	232_R	0.827	0.96
202_L	302_K	0.827	0.96
367_A	370_N	0.825	0.96
74_Y	77_L	0.824	0.96
74_Y	78_R	0.823	0.96
290_S	331_P	0.821	0.96
53_T	100_F	0.817	0.96
366_N	370_N	0.813	0.96
74_Y	96_I	0.812	0.96
94_K	130_K	0.809	0.95
214_I	264_F	0.809	0.95
264_F	268_F	0.802	0.95
18_Y	186_K	0.799	0.95
290_S	303_I	0.798	0.95
247_R	251_R	0.797	0.95
337_S	370_N	0.797	0.95
52_L	56_Q	0.797	0.95
285_K	312_H	0.797	0.95
27_K	35_I	0.796	0.95
48_Y	52_L	0.796	0.95
212_K	271_A	0.796	0.95
35_I	39_G	0.791	0.95
268_F	271_A	0.790	0.95
292_F	300_S	0.787	0.95
141_V	144_T	0.787	0.95
173_I	182_P	0.785	0.95
94_K	98_D	0.782	0.95
288_K	308_W	0.781	0.95
69_K	74_Y	0.776	0.94
256_R	260_R	0.775	0.94
23_I	157_N	0.771	0.94
235_V	243_T	0.770	0.94
74_Y	93_D	0.768	0.94
352_F	363_R	0.767	0.94
64_K	69_K	0.766	0.94
57_V	103_L	0.766	0.94
41_L	83_K	0.764	0.94
84_I	92_V	0.763	0.94
196_L	281_F	0.757	0.94
194_N	210_G	0.757	0.94
346_R	363_R	0.756	0.94
53_T	103_L	0.754	0.93
45_A	95_A	0.754	0.93
38_Y	42_L	0.753	0.93
343_F	352_F	0.750	0.93
272_L	276_Y	0.747	0.93
228_M	232_R	0.746	0.93
23_I	181_L	0.744	0.93
270_N	318_K	0.743	0.93
230_V	234_K	0.743	0.93
132_T	135_K	0.742	0.93
153_F	156_S	0.738	0.93
41_L	87_L	0.733	0.92
333_F	337_S	0.732	0.92
204_T	213_F	0.731	0.92
87_L	90_H	0.731	0.92
282_A	374_K	0.730	0.92
191_T	194_N	0.730	0.92
349_G	352_F	0.729	0.92
25_N	181_L	0.729	0.92
234_K	237_S	0.725	0.92
213_F	365_L	0.723	0.92
309_G	313_R	0.722	0.92
257_E	305_R	0.721	0.92
51_S	122_V	0.721	0.92
71_K	96_I	0.720	0.92
282_A	372_Y	0.719	0.92
201_N	207_A	0.715	0.91
44_K	81_L	0.713	0.91
203_Y	207_A	0.713	0.91
40_T	44_K	0.710	0.91
199_D	364_Q	0.709	0.91
34_L	38_Y	0.708	0.91
128_R	173_I	0.707	0.91
24_K	180_Y	0.707	0.91
229_E	236_Q	0.705	0.91
236_Q	250_L	0.704	0.91
96_I	100_F	0.702	0.91
299_L	303_I	0.700	0.91
206_D	311_I	0.700	0.91
23_I	163_R	0.700	0.91
134_R	169_L	0.699	0.91
65_I	73_V	0.698	0.90
29_E	33_E	0.697	0.90
90_H	93_D	0.696	0.90
23_I	164_V	0.696	0.90
171_E	184_R	0.695	0.90
67_L	96_I	0.694	0.90
189_W	192_P	0.691	0.90
242_H	245_R	0.688	0.90
286_L	331_P	0.688	0.90
91_Y	127_V	0.688	0.90
103_L	107_R	0.686	0.90
90_H	133_L	0.683	0.90
233_A	236_Q	0.681	0.89
234_K	246_G	0.681	0.89
333_F	344_V	0.679	0.89
282_A	327_K	0.678	0.89
224_L	256_R	0.678	0.89
221_L	224_L	0.677	0.89
281_F	315_L	0.673	0.89
231_K	235_V	0.672	0.89
243_T	250_L	0.671	0.89
69_K	73_V	0.669	0.89
63_Y	69_K	0.668	0.88
145_V	174_I	0.668	0.88
346_R	350_K	0.666	0.88
205_L	306_T	0.665	0.88
67_L	70_K	0.665	0.88
30_K	33_E	0.663	0.88
371_I	374_K	0.661	0.88
216_I	306_T	0.660	0.88
65_I	68_P	0.659	0.88
41_L	44_K	0.658	0.88
75_K	79_E	0.655	0.88
224_L	228_M	0.655	0.88
262_L	266_R	0.654	0.87
274_D	280_F	0.653	0.87
38_Y	87_L	0.653	0.87
102_I	120_P	0.651	0.87
89_S	130_K	0.649	0.87
294_D	303_I	0.648	0.87
56_Q	61_G	0.647	0.87
103_L	106_W	0.647	0.87
37_E	41_L	0.644	0.87
20_T	184_R	0.643	0.87
76_P	80_E	0.643	0.87
178_K	259_N	0.642	0.86
52_L	55_I	0.641	0.86
261_V	305_R	0.641	0.86
205_L	269_V	0.639	0.86
312_H	316_K	0.635	0.86
92_V	95_A	0.634	0.86
95_A	99_A	0.632	0.86
189_W	324_S	0.629	0.85
106_W	109_R	0.627	0.85
130_K	133_L	0.627	0.85
355_E	363_R	0.627	0.85
234_K	249_L	0.621	0.85
168_E	186_K	0.621	0.85
61_G	64_K	0.619	0.84
332_H	336_R	0.619	0.84
99_A	103_L	0.618	0.84
297_G	304_S	0.618	0.84
148_Y	151_I	0.616	0.84
48_Y	77_L	0.616	0.84
38_Y	88_A	0.613	0.84
137_V	140_S	0.613	0.84
22_S	182_P	0.613	0.84
244_K	248_E	0.613	0.84
73_V	77_L	0.612	0.84
67_L	72_E	0.612	0.84
240_S	243_T	0.611	0.84
233_A	237_S	0.610	0.84
142_R	145_V	0.610	0.84
129_I	145_V	0.609	0.83
224_L	253_Y	0.609	0.83
52_L	77_L	0.608	0.83
73_V	76_P	0.607	0.83
340_R	361_L	0.605	0.83
129_I	132_T	0.603	0.83
317_Y	321_L	0.603	0.83
349_G	355_E	0.603	0.83
39_G	127_V	0.599	0.82
288_K	291_M	0.596	0.82
254_S	261_V	0.593	0.82
254_S	258_R	0.593	0.82
128_R	131_T	0.592	0.82
319_A	322_Y	0.592	0.82
38_Y	129_I	0.591	0.82
27_K	32_K	0.587	0.81
203_Y	350_K	0.585	0.81
229_E	237_S	0.585	0.81
42_L	127_V	0.585	0.81
346_R	362_D	0.582	0.81
27_K	151_I	0.580	0.80
257_E	261_V	0.579	0.80
205_L	265_V	0.579	0.80
337_S	342_G	0.579	0.80
60_N	64_K	0.578	0.80
374_K	377_G	0.578	0.80
21_Y	157_N	0.577	0.80
180_Y	255_H	0.577	0.80
315_L	326_V	0.577	0.80
208_Y	214_I	0.575	0.80
361_L	366_N	0.574	0.80
333_F	352_F	0.571	0.79
347_K	362_D	0.569	0.79
87_L	92_V	0.569	0.79
314_V	318_K	0.568	0.79
276_Y	281_F	0.568	0.79
202_L	293_K	0.568	0.79
243_T	246_G	0.565	0.79
68_P	74_Y	0.564	0.79
222_Y	302_K	0.563	0.78
194_N	276_Y	0.563	0.78
337_S	352_F	0.563	0.78
268_F	311_I	0.559	0.78
288_K	303_I	0.559	0.78
145_V	148_Y	0.558	0.78
330_N	333_F	0.558	0.78
22_S	262_L	0.555	0.77
51_S	54_K	0.555	0.77
221_L	225_K	0.553	0.77
273_L	326_V	0.553	0.77
96_I	99_A	0.551	0.77
199_D	335_S	0.550	0.77
134_R	138_G	0.550	0.77
345_S	350_K	0.550	0.77
214_I	271_A	0.549	0.77
175_K	255_H	0.547	0.76
225_K	229_E	0.547	0.76
63_Y	73_V	0.546	0.76
259_N	262_L	0.544	0.76
309_G	312_H	0.544	0.76
209_D	365_L	0.543	0.76
34_L	37_E	0.541	0.76
307_V	310_S	0.541	0.76
53_T	56_Q	0.540	0.76
334_T	337_S	0.536	0.75
155_W	163_R	0.535	0.75
134_R	172_P	0.534	0.75
270_N	273_L	0.533	0.75
153_F	157_N	0.533	0.75
259_N	263_D	0.533	0.75
48_Y	83_K	0.533	0.75
57_V	106_W	0.529	0.74
222_Y	301_R	0.529	0.74
18_Y	170_G	0.528	0.74
265_V	268_F	0.527	0.74
202_L	292_F	0.526	0.74
289_E	309_G	0.526	0.74
129_I	134_R	0.526	0.74
127_V	134_R	0.526	0.74
26_D	154_S	0.526	0.74
64_K	70_K	0.523	0.73
91_Y	129_I	0.518	0.73
292_F	297_G	0.515	0.72
229_E	297_G	0.515	0.72
290_S	293_K	0.514	0.72
137_V	142_R	0.513	0.72
353_E	359_F	0.512	0.72
70_K	77_L	0.511	0.72
89_S	133_L	0.511	0.72
163_R	166_E	0.509	0.71
203_Y	347_K	0.509	0.71
127_V	133_L	0.508	0.71
67_L	74_Y	0.508	0.71
300_S	304_S	0.507	0.71
347_K	351_T	0.507	0.71
299_L	302_K	0.507	0.71
362_D	367_A	0.505	0.71
64_K	71_K	0.505	0.71
25_N	153_F	0.503	0.70
206_D	214_I	0.502	0.70
170_G	184_R	0.502	0.70
270_N	314_V	0.500	0.70

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1nu0A	1	0.3073	94.6	0.935	Contact Map
1vhxA	2	0.3239	93.5	0.938	Contact Map
1iv0A	1	0.2293	91.6	0.942	Contact Map
2k4xA	1	0.1253	85.3	0.948	Contact Map
1qypA	1	0.1017	84.5	0.948	Contact Map
3j20Y	1	0.1135	82.8	0.95	Contact Map
4aybP	1	0.0946	81	0.95	Contact Map
1ffkW	1	0.156	77.6	0.952	Contact Map
3j3w0	1	0.13	71.1	0.954	Contact Map
1vd4A	1	0.1253	67.2	0.956	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0114 seconds.