Q97U55 - SULSO - GREMLIN Contacts

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Q97U55 - Uncharacterized protein

UniProt:	Q97U55	Sequences: MVVRVLKSSFLLAFTIFYGLSSIKRGFVYILTYLSIPLAELFLIYIITRGDFVKFAIVGGLISVMANNGFSLIGDLVFLRLESRLQDLLVATSIGPSDYIIGLILANLLYSSPGLILYIILAILYHVLTLSNFIPLLIDITLLLFATSSIGFFLASLVPHTRYGWGLAGLLSSILTIIPPVFYPYTLIPKSLYIPLLILPTTASAIFSQGITNLVSTSIEMLLLSFLVLLFESILFFYLSVRFSRWRER	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	249 (232)
Sequences:	18953 (13242)
Seq/√Len:	869.3

ECOLI - YADH YHHJ YBHR YBHS
BACSU - TAGG YVFS YFIN YFIM YHAP NATB
HALSA - Q9HRJ5 Q9HMU9
SULSO - Q97U55 Q97Z04 Q97VH7 Q97WP5 Q7LY08 Q97W41

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
139_D	207_F	4.661	1.00
17_F	21_S	4.282	1.00
143_L	204_S	3.217	1.00
153_F	239_L	3.141	1.00
11_L	98_D	3.090	1.00
16_I	109_L	2.949	1.00
13_A	17_F	2.631	1.00
15_T	102_G	2.620	1.00
95_G	98_D	2.620	1.00
19_G	103_L	2.603	1.00
51_D	54_K	2.523	1.00
116_I	137_L	2.506	1.00
190_K	194_I	2.429	1.00
193_Y	197_L	2.421	1.00
145_F	233_S	2.368	1.00
16_I	105_L	2.368	1.00
12_L	105_L	2.317	1.00
223_L	227_L	2.241	1.00
146_A	233_S	2.230	1.00
79_L	103_L	2.110	1.00
21_S	24_K	2.044	1.00
191_S	194_I	1.972	1.00
12_L	16_I	1.965	1.00
238_Y	242_R	1.938	1.00
185_Y	196_L	1.891	1.00
227_L	231_F	1.889	1.00
203_A	225_S	1.880	1.00
160_H	163_Y	1.861	1.00
224_L	228_V	1.851	1.00
153_F	243_F	1.840	1.00
196_L	202_T	1.838	1.00
190_K	193_Y	1.794	1.00
12_L	98_D	1.785	1.00
120_I	124_L	1.781	1.00
146_A	236_F	1.749	1.00
194_I	198_I	1.719	1.00
52_F	55_F	1.700	1.00
206_I	225_S	1.671	1.00
197_L	203_A	1.665	1.00
228_V	231_F	1.641	1.00
153_F	236_F	1.634	1.00
194_I	197_L	1.630	1.00
203_A	228_V	1.614	1.00
24_K	27_F	1.584	1.00
158_V	167_L	1.570	1.00
149_S	233_S	1.568	1.00
149_S	237_F	1.564	1.00
135_P	211_I	1.541	1.00
232_E	236_F	1.528	1.00
181_V	205_A	1.489	1.00
228_V	232_E	1.488	1.00
139_D	211_I	1.481	1.00
224_L	227_L	1.480	1.00
218_S	221_M	1.477	1.00
142_L	230_L	1.475	1.00
143_L	147_T	1.463	1.00
231_F	235_L	1.458	1.00
156_S	243_F	1.445	1.00
102_G	106_A	1.426	1.00
12_L	101_I	1.421	1.00
13_A	16_I	1.397	1.00
197_L	202_T	1.390	1.00
134_I	138_I	1.381	1.00
121_L	125_Y	1.356	1.00
12_L	102_G	1.349	1.00
79_L	84_R	1.348	1.00
59_G	209_Q	1.337	1.00
135_P	138_I	1.331	1.00
20_L	106_A	1.325	1.00
112_S	141_T	1.318	1.00
191_S	195_P	1.303	1.00
188_I	193_Y	1.303	1.00
142_L	233_S	1.300	1.00
16_I	102_G	1.299	1.00
185_Y	197_L	1.250	1.00
57_I	122_A	1.250	1.00
146_A	229_L	1.246	1.00
140_I	204_S	1.241	1.00
142_L	226_F	1.240	1.00
97_S	101_I	1.226	1.00
175_L	199_L	1.224	1.00
226_F	230_L	1.220	1.00
21_S	25_R	1.214	1.00
154_L	158_V	1.199	1.00
62_I	201_T	1.197	1.00
170_L	174_I	1.187	1.00
139_D	226_F	1.175	1.00
233_S	237_F	1.168	1.00
20_L	24_K	1.163	1.00
18_Y	79_L	1.156	1.00
185_Y	193_Y	1.150	1.00
206_I	210_G	1.147	1.00
52_F	56_A	1.139	1.00
108_L	141_T	1.130	1.00
235_L	239_L	1.129	1.00
14_F	17_F	1.128	1.00
159_P	163_Y	1.119	1.00
199_L	202_T	1.112	1.00
149_S	240_S	1.097	1.00
108_L	145_F	1.096	1.00
73_I	164_G	1.096	1.00
210_G	215_V	1.092	1.00
111_S	144_L	1.089	1.00
239_L	243_F	1.086	1.00
36_I	40_E	1.072	1.00
120_I	123_I	1.071	1.00
58_V	63_S	1.069	1.00
206_I	221_M	1.068	1.00
130_L	134_I	1.066	1.00
146_A	232_E	1.064	1.00
157_L	243_F	1.054	1.00
158_V	163_Y	1.020	1.00
235_L	238_Y	1.017	1.00
203_A	206_I	1.015	1.00
138_I	142_L	1.010	1.00
144_L	148_S	0.992	1.00
20_L	109_L	0.990	1.00
242_R	245_R	0.985	1.00
185_Y	202_T	0.983	1.00
19_G	22_S	0.979	1.00
203_A	207_F	0.977	1.00
104_I	149_S	0.974	1.00
78_F	82_E	0.972	1.00
150_I	171_L	0.970	1.00
189_P	193_Y	0.966	1.00
57_I	61_L	0.955	1.00
135_P	222_L	0.950	1.00
131_S	134_I	0.942	1.00
73_I	76_L	0.934	1.00
38_L	121_L	0.931	1.00
239_L	242_R	0.931	1.00
72_L	75_D	0.922	1.00
81_L	161_T	0.921	1.00
58_V	61_L	0.918	1.00
136_L	208_S	0.918	1.00
74_G	79_L	0.917	1.00
115_L	140_I	0.915	1.00
227_L	230_L	0.903	1.00
42_F	46_I	0.899	1.00
149_S	236_F	0.897	1.00
230_L	234_I	0.896	1.00
188_I	196_L	0.889	1.00
225_S	229_L	0.888	1.00
94_I	99_Y	0.882	1.00
16_I	106_A	0.881	1.00
202_T	206_I	0.877	1.00
57_I	60_G	0.873	1.00
31_L	35_S	0.870	1.00
121_L	124_L	0.868	1.00
130_L	133_F	0.868	1.00
129_T	132_N	0.865	1.00
77_V	81_L	0.863	1.00
175_L	201_T	0.861	1.00
78_F	81_L	0.850	1.00
153_F	240_S	0.849	1.00
81_L	84_R	0.846	1.00
238_Y	241_V	0.845	1.00
180_P	185_Y	0.840	1.00
97_S	241_V	0.836	1.00
198_I	203_A	0.833	1.00
88_L	93_S	0.825	1.00
213_N	217_T	0.825	1.00
204_S	229_L	0.824	1.00
26_G	29_Y	0.822	1.00
150_I	236_F	0.812	1.00
132_N	135_P	0.812	1.00
51_D	55_F	0.805	1.00
112_S	116_I	0.803	1.00
42_F	45_Y	0.803	1.00
138_I	226_F	0.800	1.00
151_G	155_A	0.800	1.00
117_L	120_I	0.797	1.00
78_F	161_T	0.789	1.00
81_L	85_L	0.785	1.00
221_M	224_L	0.785	1.00
88_L	92_T	0.780	1.00
46_I	125_Y	0.779	1.00
19_G	106_A	0.775	1.00
171_L	174_I	0.773	1.00
23_I	110_Y	0.773	1.00
222_L	225_S	0.772	1.00
230_L	233_S	0.772	1.00
184_P	188_I	0.771	1.00
231_F	234_I	0.765	1.00
221_M	225_S	0.762	1.00
203_A	232_E	0.762	1.00
139_D	204_S	0.761	1.00
60_G	63_S	0.760	1.00
55_F	209_Q	0.760	1.00
80_R	85_L	0.754	1.00
54_K	57_I	0.753	1.00
205_A	209_Q	0.751	1.00
46_I	49_R	0.750	1.00
32_T	36_I	0.748	1.00
169_G	173_S	0.746	1.00
180_P	184_P	0.741	1.00
134_I	137_L	0.738	1.00
237_F	241_V	0.737	1.00
11_L	95_G	0.731	1.00
100_I	241_V	0.731	1.00
163_Y	166_G	0.730	1.00
45_Y	126_H	0.730	1.00
79_L	83_S	0.726	1.00
72_L	76_L	0.721	1.00
183_Y	187_L	0.720	1.00
75_D	78_F	0.718	1.00
193_Y	196_L	0.711	1.00
37_P	41_L	0.708	1.00
76_L	82_E	0.707	1.00
234_I	238_Y	0.706	1.00
23_I	33_Y	0.702	1.00
222_L	226_F	0.700	1.00
98_D	101_I	0.699	1.00
76_L	84_R	0.697	1.00
18_Y	22_S	0.696	1.00
156_S	240_S	0.694	1.00
84_R	89_L	0.694	1.00
180_P	202_T	0.694	1.00
38_L	42_F	0.693	1.00
179_P	202_T	0.690	1.00
152_F	156_S	0.687	1.00
41_L	122_A	0.678	1.00
88_L	91_A	0.676	1.00
210_G	213_N	0.675	1.00
104_I	237_F	0.674	1.00
73_I	78_F	0.673	1.00
100_I	240_S	0.673	1.00
18_Y	84_R	0.669	1.00
206_I	209_Q	0.669	1.00
73_I	77_V	0.667	1.00
76_L	80_R	0.666	1.00
119_I	136_L	0.663	1.00
62_I	205_A	0.659	1.00
136_L	212_T	0.658	1.00
53_V	57_I	0.657	1.00
236_F	240_S	0.657	1.00
75_D	81_L	0.651	1.00
40_E	44_I	0.650	1.00
77_V	80_R	0.649	1.00
66_A	147_T	0.646	1.00
116_I	120_I	0.645	1.00
43_L	46_I	0.642	1.00
42_F	121_L	0.641	1.00
133_F	137_L	0.640	1.00
207_F	225_S	0.639	1.00
152_F	240_S	0.638	1.00
137_L	141_T	0.638	1.00
187_L	190_K	0.634	1.00
189_P	192_L	0.633	1.00
80_R	84_R	0.632	1.00
87_D	90_V	0.630	1.00
98_D	102_G	0.624	1.00
108_L	148_S	0.623	1.00
76_L	79_L	0.621	1.00
207_F	222_L	0.616	1.00
107_N	111_S	0.615	1.00
172_S	176_T	0.612	1.00
59_G	183_Y	0.610	1.00
88_L	94_I	0.609	1.00
23_I	29_Y	0.609	1.00
166_G	169_G	0.609	1.00
73_I	79_L	0.609	1.00
178_I	192_L	0.607	1.00
84_R	88_L	0.606	1.00
61_L	64_V	0.605	1.00
16_I	20_L	0.604	1.00
123_I	128_L	0.602	1.00
186_T	190_K	0.602	1.00
188_I	192_L	0.601	1.00
180_P	206_I	0.601	1.00
76_L	81_L	0.600	1.00
90_V	96_P	0.599	1.00
107_N	148_S	0.599	1.00
43_L	47_I	0.598	1.00
215_V	218_S	0.594	1.00
104_I	148_S	0.593	1.00
89_L	94_I	0.590	1.00
218_S	223_L	0.589	1.00
228_V	235_L	0.589	1.00
154_L	164_G	0.588	1.00
165_W	169_G	0.588	1.00
210_G	222_L	0.587	1.00
35_S	39_A	0.587	1.00
199_L	232_E	0.581	1.00
58_V	62_I	0.578	1.00
223_L	226_F	0.578	1.00
234_I	237_F	0.577	1.00
168_A	172_S	0.573	1.00
94_I	98_D	0.572	1.00
211_I	222_L	0.571	1.00
225_S	228_V	0.571	1.00
152_F	155_A	0.569	1.00
142_L	229_L	0.569	1.00
185_Y	188_I	0.568	1.00
101_I	105_L	0.568	1.00
53_V	58_V	0.567	1.00
131_S	135_P	0.560	1.00
80_R	83_S	0.559	1.00
210_G	221_M	0.558	1.00
75_D	82_E	0.558	1.00
77_V	161_T	0.557	1.00
178_I	199_L	0.554	1.00
24_K	30_I	0.553	1.00
77_V	164_G	0.552	1.00
67_N	71_S	0.551	1.00
204_S	207_F	0.551	1.00
103_L	107_N	0.549	1.00
215_V	221_M	0.549	1.00
136_L	140_I	0.545	1.00
154_L	157_L	0.544	1.00
11_L	14_F	0.544	1.00
55_F	61_L	0.542	1.00
99_Y	244_S	0.541	1.00
153_F	156_S	0.540	1.00
210_G	225_S	0.539	1.00
179_P	199_L	0.538	1.00
35_S	38_L	0.530	1.00
12_L	97_S	0.529	1.00
69_G	147_T	0.529	1.00
229_L	233_S	0.528	1.00
178_I	196_L	0.528	1.00
173_S	176_T	0.527	1.00
89_L	99_Y	0.524	1.00
56_A	60_G	0.523	1.00
155_A	164_G	0.523	1.00
122_A	126_H	0.523	1.00
197_L	206_I	0.522	1.00
63_S	67_N	0.522	1.00
75_D	79_L	0.521	1.00
109_L	112_S	0.519	1.00
59_G	63_S	0.518	1.00
135_P	207_F	0.517	1.00
89_L	92_T	0.517	1.00
85_L	99_Y	0.515	1.00
224_L	231_F	0.515	1.00
174_I	178_I	0.515	1.00
62_I	143_L	0.514	1.00
168_A	171_L	0.510	1.00
67_N	172_S	0.510	1.00
114_G	118_Y	0.510	1.00
52_F	59_G	0.509	1.00
213_N	216_S	0.508	1.00
158_V	164_G	0.507	1.00
149_S	152_F	0.503	1.00
73_I	83_S	0.502	1.00
55_F	59_G	0.502	1.00
80_R	159_P	0.501	1.00
55_F	183_Y	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2l6wA	2	0.1406	7	0.941	Contact Map
2a65A	2	0.3414	5.1	0.944	Contact Map
3qbgA	3	0.1888	4.2	0.947	Contact Map
2mofA	1	0.1446	3.8	0.948	Contact Map
2kluA	1	0.1325	2.7	0.951	Contact Map
2kogA	1	0.1968	1.9	0.956	Contact Map
3zuxA	1	0.8193	1.7	0.957	Contact Map
2rddB	1	0.1165	1.7	0.957	Contact Map
3j1zP	8	0.5341	1.6	0.957	Contact Map
2m20A	2	0.1205	1.6	0.957	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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