Q97U50 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97U50 - Uncharacterized protein

UniProt:	Q97U50	Sequences: MYVADLITRNPLTVKPETSIRDAAKIMKRENLGSLIIVDETNKPIGIVTERDILRAVADEVALDSPVSTIMTRGLITIPPNKDVTEALIIMYQNNVRHLAVVGQSGELVGVISIRDAAKAVNLLALDLSIW	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	131 (116)
Sequences:	13563 (10329)
Seq/√Len:	959.0

ECOLI - GUTQ KDSD IMDH YTFL YFJD CORC YEGH YOAE
BACSU - ACUB CCPN YLBB YHCV YKUL YTOI MGTE IMDH YRKA YHDP YHDT YQHB YUGS
HALSA - Q9HPF4 Q9HQD0 Q9HRK9 Q9HNB6 Q9HMW8 Q9HNT8 Q9HR38 Q9HPN8 IMDH Q9HRX1 Q9HN02 Q9HHN9
SULSO - Q97U50 Q97VD7 Q97U00 Q97U20 Q97VN1 Q7LXY4 Q97V95 Q981B7 Q7LXN6 Q97Z58 Q97U23

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
18_T	22_D	2.857	1.00
34_S	98_H	2.630	1.00
78_I	101_V	2.425	1.00
16_P	68_S	2.287	1.00
76_I	94_N	2.205	1.00
78_I	82_K	2.142	1.00
15_K	18_T	2.139	1.00
82_K	86_E	2.099	1.00
79_P	82_K	1.933	1.00
80_P	109_V	1.854	1.00
16_P	45_I	1.803	1.00
80_P	104_Q	1.800	1.00
14_V	18_T	1.778	1.00
14_V	23_A	1.730	1.00
14_V	35_L	1.702	1.00
14_V	37_I	1.681	1.00
23_A	67_V	1.681	1.00
66_P	69_T	1.633	1.00
15_K	40_E	1.632	1.00
12_L	30_E	1.606	1.00
79_P	104_Q	1.605	1.00
78_I	87_A	1.604	1.00
76_I	96_V	1.549	1.00
36_I	44_P	1.534	1.00
16_P	39_D	1.532	1.00
97_R	114_I	1.519	1.00
65_S	69_T	1.476	1.00
100_A	108_L	1.466	1.00
23_A	48_V	1.457	1.00
17_E	68_S	1.456	1.00
87_A	99_L	1.418	1.00
26_I	30_E	1.407	1.00
39_D	43_K	1.394	1.00
25_K	29_R	1.342	1.00
90_I	94_N	1.317	1.00
23_A	35_L	1.316	1.00
18_T	26_I	1.298	1.00
48_V	53_I	1.290	1.00
77_T	102_V	1.290	1.00
13_T	38_V	1.283	1.00
78_I	99_L	1.281	1.00
19_S	22_D	1.273	1.00
82_K	90_I	1.260	1.00
14_V	67_V	1.249	1.00
76_I	90_I	1.226	1.00
48_V	67_V	1.219	1.00
39_D	45_I	1.215	1.00
87_A	112_I	1.205	1.00
83_D	86_E	1.174	1.00
6_L	84_V	1.168	1.00
22_D	25_K	1.161	1.00
21_R	25_K	1.159	1.00
21_R	64_D	1.151	1.00
6_L	112_I	1.141	1.00
34_S	47_I	1.118	1.00
44_P	108_L	1.114	1.00
33_G	50_E	1.099	1.00
37_I	71_M	1.094	1.00
12_L	26_I	1.089	1.00
48_V	70_I	1.075	1.00
52_D	72_T	1.069	1.00
20_I	70_I	1.065	1.00
86_E	90_I	1.058	1.00
47_I	100_A	1.058	1.00
50_E	54_L	1.051	1.00
89_I	93_Q	1.037	1.00
65_S	70_I	1.025	1.00
42_N	107_E	1.020	1.00
90_I	99_L	1.013	1.00
24_A	53_I	1.008	1.00
38_V	45_I	0.992	1.00
54_L	97_R	0.980	1.00
46_G	71_M	0.979	1.00
26_I	29_R	0.978	1.00
14_V	26_I	0.976	1.00
84_V	117_A	0.975	1.00
92_Y	119_K	0.943	1.00
44_P	100_A	0.942	1.00
44_P	75_L	0.936	1.00
8_T	116_D	0.923	1.00
36_I	100_A	0.923	1.00
32_L	35_L	0.923	1.00
12_L	32_L	0.922	1.00
67_V	71_M	0.903	1.00
36_I	108_L	0.898	1.00
22_D	26_I	0.890	1.00
78_I	90_I	0.880	1.00
50_E	97_R	0.873	1.00
7_I	101_V	0.865	1.00
55_R	58_A	0.865	1.00
98_H	111_V	0.862	1.00
27_M	35_L	0.862	1.00
17_E	66_P	0.818	1.00
82_K	87_A	0.818	1.00
43_K	106_G	0.814	1.00
62_A	65_S	0.808	1.00
26_I	35_L	0.802	1.00
15_K	38_V	0.783	1.00
23_A	27_M	0.783	1.00
34_S	97_R	0.773	1.00
81_N	104_Q	0.771	1.00
68_S	71_M	0.764	1.00
77_T	106_G	0.763	1.00
61_V	65_S	0.762	1.00
91_M	99_L	0.734	1.00
43_K	107_E	0.729	1.00
13_T	42_N	0.729	1.00
98_H	113_S	0.725	1.00
7_I	110_G	0.724	1.00
86_E	89_I	0.709	1.00
16_P	40_E	0.705	1.00
33_G	114_I	0.704	1.00
97_R	115_R	0.702	1.00
21_R	63_L	0.694	1.00
38_V	42_N	0.689	1.00
102_V	106_G	0.678	1.00
115_R	119_K	0.674	1.00
45_I	71_M	0.669	1.00
102_V	108_L	0.664	1.00
55_R	59_D	0.659	1.00
34_S	111_V	0.658	1.00
33_G	97_R	0.651	1.00
20_I	56_A	0.650	1.00
6_L	120_A	0.649	1.00
85_T	89_I	0.648	1.00
95_N	115_R	0.646	1.00
51_R	97_R	0.644	1.00
34_S	49_T	0.639	1.00
38_V	44_P	0.636	1.00
49_T	52_D	0.628	1.00
54_L	58_A	0.627	1.00
8_T	11_P	0.626	1.00
15_K	39_D	0.618	1.00
28_K	59_D	0.612	1.00
112_I	117_A	0.605	1.00
79_P	106_G	0.602	1.00
79_P	102_V	0.597	1.00
56_A	60_E	0.596	1.00
106_G	109_V	0.593	1.00
114_I	118_A	0.593	1.00
91_M	114_I	0.590	1.00
87_A	91_M	0.589	1.00
88_L	118_A	0.584	1.00
36_I	45_I	0.577	1.00
50_E	115_R	0.577	1.00
19_S	66_P	0.575	1.00
32_L	36_I	0.573	1.00
17_E	40_E	0.573	1.00
84_V	88_L	0.563	1.00
47_I	98_H	0.562	1.00
98_H	114_I	0.562	1.00
72_T	75_L	0.559	1.00
12_L	35_L	0.558	1.00
111_V	116_D	0.557	1.00
33_G	36_I	0.553	1.00
60_E	63_L	0.550	1.00
100_A	109_V	0.550	1.00
88_L	117_A	0.548	1.00
24_A	50_E	0.547	1.00
7_I	109_V	0.540	1.00
50_E	98_H	0.531	1.00
56_A	59_D	0.531	1.00
53_I	56_A	0.526	1.00
90_I	93_Q	0.522	1.00
101_V	109_V	0.520	1.00
96_V	99_L	0.518	1.00
77_T	90_I	0.518	1.00
36_I	111_V	0.517	1.00
56_A	70_I	0.511	1.00
24_A	28_K	0.509	1.00
47_I	75_L	0.507	1.00
47_I	72_T	0.502	1.00
11_P	36_I	0.501	1.00
33_G	51_R	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l2bA	2	0.8779	99.9	0.203	Contact Map
4cooA	2	0.9389	99.9	0.229	Contact Map
3pc3A	2	0.9542	99.8	0.253	Contact Map
1pvmA	2	1	99.8	0.254	Contact Map
2ef7A	3	0.9695	99.8	0.259	Contact Map
4nocA	2	0.9389	99.8	0.262	Contact Map
3fhmA	2	0.9389	99.8	0.262	Contact Map
2qrdG	1	0.9618	99.8	0.265	Contact Map
3t4nC	1	0.9542	99.8	0.265	Contact Map
2j9lA	3	0.9847	99.8	0.267	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.006 seconds.