Q97U24 - SULSO - GREMLIN Contacts

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Q97U24 - Uncharacterized protein

UniProt:	Q97U24	Sequences: MQEVQRPPNQKYIKNFIVYAEFGIPEVNLETYRLKVSGEVENSLSFTYEELMKLPRKEIVEDFHCVTGWSIKSVKWEGIPFKLLIEMAKVKNKVNWVMFYSLDGYTSIIPFEDLLKDNVIVALFMNGEKLPLKHGFPARPIIPHLYAWKSAKWLTEIEFIKDYVDGYWEERGYHERGNVWEEERFKGQGGKHLRRRPVL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	199 (178)
Sequences:	4103 (2355)
Seq/√Len:	176.5

ECOLI - YEDY
BACSU - YUIH
HALSA - Q9HQN1
SULSO - Q97U24 Q97V11

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
56_R	123_L	3.754	1.00
47_T	50_E	3.403	1.00
80_P	83_L	3.310	1.00
41_E	89_K	3.166	1.00
58_E	77_E	3.076	1.00
37_S	158_E	3.057	1.00
37_S	156_E	3.022	1.00
41_E	91_K	2.933	1.00
99_F	157_I	2.691	1.00
54_L	87_M	2.584	1.00
100_Y	156_E	2.564	1.00
33_R	45_S	2.460	1.00
77_E	124_F	2.456	1.00
35_K	45_S	2.320	1.00
121_V	138_A	2.221	1.00
44_L	88_A	2.148	1.00
86_E	115_L	2.137	1.00
98_M	160_I	2.131	1.00
83_L	86_E	2.103	1.00
85_I	159_F	2.076	1.00
63_F	147_A	2.051	1.00
58_E	75_K	2.034	1.00
28_N	31_T	2.024	1.00
39_E	161_K	1.998	1.00
75_K	127_G	1.970	1.00
74_V	125_M	1.963	1.00
97_V	159_F	1.914	1.00
109_I	142_I	1.880	1.00
84_L	121_V	1.880	1.00
60_V	75_K	1.872	1.00
82_K	86_E	1.841	1.00
39_E	91_K	1.824	1.00
122_A	141_I	1.726	1.00
56_R	77_E	1.726	1.00
93_K	161_K	1.695	1.00
102_L	155_T	1.692	1.00
57_K	80_P	1.690	1.00
49_E	53_K	1.625	1.00
100_Y	158_E	1.612	1.00
81_F	114_L	1.608	1.00
42_N	89_K	1.575	1.00
98_M	158_E	1.558	1.00
16_F	74_V	1.526	1.00
40_V	43_S	1.521	1.00
79_I	84_L	1.511	1.00
99_F	154_L	1.507	1.00
35_K	156_E	1.504	1.00
62_D	73_S	1.493	1.00
52_M	123_L	1.483	1.00
121_V	154_L	1.462	1.00
94_V	159_F	1.454	1.00
48_Y	52_M	1.453	1.00
46_F	87_M	1.439	1.00
99_F	140_P	1.404	1.00
44_L	87_M	1.389	1.00
56_R	124_F	1.386	1.00
39_E	93_K	1.361	1.00
30_E	49_E	1.323	1.00
119_V	142_I	1.308	1.00
97_V	114_L	1.264	1.00
63_F	150_S	1.253	1.00
124_F	129_K	1.250	1.00
116_K	119_V	1.225	1.00
32_Y	48_Y	1.209	1.00
165_D	170_E	1.169	1.00
77_E	123_L	1.163	1.00
10_Q	60_V	1.146	1.00
54_L	79_I	1.126	1.00
55_P	83_L	1.109	1.00
82_K	117_D	1.108	1.00
166_G	169_E	1.101	1.00
59_I	120_I	1.086	1.00
16_F	125_M	1.084	1.00
51_L	138_A	1.071	1.00
13_I	131_P	1.049	1.00
81_F	157_I	1.045	1.00
101_S	151_A	1.043	1.00
107_S	151_A	1.031	0.99
165_D	169_E	1.011	0.99
111_F	159_F	1.010	0.99
107_S	148_W	1.000	0.99
39_E	94_V	0.997	0.99
95_N	161_K	0.995	0.99
113_D	145_L	0.979	0.99
142_I	150_S	0.978	0.99
55_P	80_P	0.972	0.99
29_L	48_Y	0.969	0.99
90_V	159_F	0.965	0.99
40_V	159_F	0.956	0.99
20_A	24_I	0.950	0.99
52_M	124_F	0.948	0.99
176_R	183_E	0.946	0.99
16_F	72_K	0.941	0.99
49_E	52_M	0.939	0.99
63_F	74_V	0.916	0.99
34_L	138_A	0.914	0.99
75_K	126_N	0.914	0.99
113_D	144_H	0.912	0.99
57_K	83_L	0.911	0.99
38_G	43_S	0.903	0.99
32_Y	138_A	0.899	0.99
125_M	134_H	0.897	0.99
113_D	176_R	0.893	0.98
79_I	123_L	0.883	0.98
36_V	40_V	0.882	0.98
13_I	74_V	0.882	0.98
110_P	113_D	0.881	0.98
97_V	157_I	0.877	0.98
46_F	88_A	0.869	0.98
85_I	90_V	0.868	0.98
54_L	83_L	0.867	0.98
107_S	149_K	0.865	0.98
50_E	53_K	0.844	0.98
10_Q	125_M	0.832	0.98
125_M	131_P	0.827	0.97
26_E	132_L	0.826	0.97
30_E	48_Y	0.823	0.97
66_V	148_W	0.806	0.97
140_P	151_A	0.804	0.97
74_V	126_N	0.793	0.97
56_R	79_I	0.788	0.97
81_F	140_P	0.787	0.97
37_S	43_S	0.784	0.97
40_V	88_A	0.780	0.96
27_V	102_L	0.775	0.96
36_V	44_L	0.769	0.96
123_L	129_K	0.767	0.96
158_E	164_V	0.766	0.96
64_H	71_I	0.758	0.96
98_M	169_E	0.752	0.96
40_V	94_V	0.747	0.95
121_V	140_P	0.747	0.95
80_P	120_I	0.743	0.95
90_V	111_F	0.740	0.95
57_K	120_I	0.737	0.95
83_L	87_M	0.736	0.95
168_W	177_G	0.735	0.95
79_I	83_L	0.731	0.95
131_P	134_H	0.729	0.95
141_I	150_S	0.727	0.95
46_F	50_E	0.724	0.95
140_P	154_L	0.723	0.95
40_V	44_L	0.713	0.94
20_A	153_W	0.704	0.94
35_K	43_S	0.703	0.94
13_I	128_E	0.692	0.93
114_L	119_V	0.692	0.93
85_I	88_A	0.686	0.93
36_V	46_F	0.684	0.93
167_Y	171_R	0.682	0.93
51_L	79_I	0.680	0.93
122_A	140_P	0.677	0.92
100_Y	106_T	0.677	0.92
19_Y	69_W	0.674	0.92
123_L	138_A	0.670	0.92
116_K	144_H	0.667	0.92
64_H	107_S	0.667	0.92
24_I	133_K	0.666	0.92
13_I	125_M	0.661	0.92
107_S	169_E	0.652	0.91
148_W	169_E	0.650	0.91
29_L	136_F	0.649	0.91
24_I	132_L	0.646	0.91
23_G	26_E	0.643	0.90
98_M	164_V	0.642	0.90
120_I	141_I	0.635	0.90
87_M	90_V	0.635	0.90
140_P	157_I	0.634	0.90
79_I	121_V	0.632	0.90
96_W	164_V	0.630	0.90
105_Y	148_W	0.626	0.89
66_V	69_W	0.625	0.89
68_G	180_W	0.624	0.89
122_A	138_A	0.619	0.89
85_I	115_L	0.617	0.89
98_M	165_D	0.617	0.89
52_M	129_K	0.616	0.88
44_L	50_E	0.616	0.88
66_V	146_Y	0.612	0.88
44_L	89_K	0.608	0.88
95_N	111_F	0.606	0.88
37_S	100_Y	0.605	0.88
51_L	123_L	0.604	0.87
12_Y	15_N	0.604	0.87
160_I	164_V	0.604	0.87
38_G	94_V	0.603	0.87
81_F	159_F	0.602	0.87
18_V	133_K	0.601	0.87
108_I	163_Y	0.598	0.87
77_E	80_P	0.596	0.87
98_M	106_T	0.594	0.87
55_P	79_I	0.592	0.86
89_K	159_F	0.590	0.86
63_F	141_I	0.585	0.86
74_V	141_I	0.584	0.86
81_F	85_I	0.583	0.86
72_K	147_A	0.583	0.86
37_S	40_V	0.581	0.85
34_L	46_F	0.581	0.85
182_E	185_F	0.580	0.85
162_D	165_D	0.580	0.85
71_I	74_V	0.579	0.85
67_T	70_S	0.578	0.85
67_T	148_W	0.577	0.85
122_A	130_L	0.576	0.85
95_N	162_D	0.576	0.85
39_E	160_I	0.575	0.85
167_Y	170_E	0.574	0.85
17_I	71_I	0.573	0.85
8_P	15_N	0.571	0.84
113_D	116_K	0.571	0.84
76_W	122_A	0.568	0.84
53_K	86_E	0.566	0.84
9_N	60_V	0.565	0.84
81_F	119_V	0.564	0.84
84_L	138_A	0.564	0.84
34_L	48_Y	0.562	0.83
21_E	24_I	0.562	0.83
71_I	182_E	0.561	0.83
19_Y	67_T	0.560	0.83
113_D	119_V	0.558	0.83
29_L	52_M	0.555	0.83
10_Q	75_K	0.554	0.83
16_F	76_W	0.548	0.82
81_F	142_I	0.547	0.82
79_I	120_I	0.547	0.82
64_H	182_E	0.546	0.82
96_W	108_I	0.546	0.82
106_T	170_E	0.545	0.82
97_V	111_F	0.542	0.81
79_I	138_A	0.541	0.81
166_G	170_E	0.540	0.81
11_K	68_G	0.540	0.81
46_F	54_L	0.540	0.81
128_E	131_P	0.539	0.81
39_E	43_S	0.539	0.81
145_L	149_K	0.536	0.81
168_W	172_G	0.535	0.80
16_F	168_W	0.531	0.80
82_K	116_K	0.530	0.80
43_S	46_F	0.530	0.80
171_R	174_H	0.528	0.80
90_V	115_L	0.527	0.79
27_V	34_L	0.527	0.79
76_W	142_I	0.527	0.79
163_Y	175_E	0.527	0.79
41_E	44_L	0.526	0.79
20_A	101_S	0.522	0.79
27_V	103_D	0.521	0.79
169_E	172_G	0.521	0.79
146_Y	149_K	0.520	0.79
118_N	144_H	0.518	0.78
105_Y	149_K	0.517	0.78
36_V	84_L	0.516	0.78
167_Y	172_G	0.516	0.78
33_R	47_T	0.513	0.78
25_P	150_S	0.511	0.77
149_K	168_W	0.510	0.77
60_V	72_K	0.510	0.77
9_N	12_Y	0.508	0.77
96_W	163_Y	0.507	0.77
84_L	88_A	0.507	0.77
109_I	145_L	0.505	0.76
66_V	149_K	0.504	0.76
70_S	107_S	0.504	0.76
98_M	108_I	0.503	0.76
38_G	41_E	0.500	0.76

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1ogpA	4	1	100	0.181	Contact Map
2a9dA	2	1	100	0.181	Contact Map
1soxA	2	1	100	0.182	Contact Map
2blfA	1	0.995	100	0.205	Contact Map
2bihA	2	1	100	0.215	Contact Map
2biiA	2	1	100	0.218	Contact Map
1xdyA	3	0.995	100	0.218	Contact Map
2xtsA	2	0.995	100	0.225	Contact Map
4pw3A	2	0.9648	100	0.229	Contact Map
2nptA	1	0.4623	16.8	0.957	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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