GREMLIN Database
Y3206 - RutC family protein SSO3206
UniProt: Q97U19 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 126 (116)
Sequences: 6011 (3829)
Seq/√Len: 355.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
52_I94_K3.3081.00
59_K69_L2.9111.00
67_Y71_D2.9081.00
46_N49_E2.6141.00
48_E87_R2.5061.00
74_M120_T2.3901.00
77_V88_F2.1751.00
78_Y106_V2.1511.00
52_I56_E2.0991.00
48_E90_E2.0471.00
56_E95_Y2.0191.00
107_E110_R1.9621.00
110_R114_D1.9011.00
33_I115_V1.8721.00
50_Q116_L1.8391.00
58_I121_V1.7981.00
62_L123_A1.7861.00
59_K63_E1.7251.00
42_V115_V1.6541.00
84_D116_L1.6011.00
75_S121_V1.5971.00
23_V73_V1.5741.00
27_L67_Y1.5511.00
52_I95_Y1.5501.00
79_L88_F1.5371.00
53_R57_N1.5221.00
47_I51_T1.5021.00
56_E59_K1.4851.00
68_M71_D1.4521.00
82_I107_E1.4261.00
36_D39_T1.3991.00
53_R56_E1.3641.00
34_P115_V1.3501.00
104_V120_T1.3461.00
79_L105_T1.3431.00
41_E113_R1.2921.00
22_K25_D1.2891.00
28_Y122_I1.2691.00
23_V124_Q1.2601.00
89_N103_R1.2541.00
80_K84_D1.2361.00
87_R90_E1.2351.00
29_V61_V1.2241.00
31_G118_E1.2051.00
91_V94_K1.1601.00
36_D43_V1.1581.00
92_Y103_R1.1531.00
10_A19_Q1.1521.00
72_V121_V1.1191.00
97_S100_P1.1091.00
9_K63_E1.0811.00
47_I88_F1.0811.00
52_I91_V1.0811.00
62_L67_Y1.0791.00
22_K27_L1.0791.00
29_V121_V1.0661.00
84_D87_R1.0571.00
90_E93_S1.0551.00
26_I124_Q1.0371.00
78_Y108_V1.0371.00
62_L72_V1.0331.00
78_Y104_V1.0301.00
27_L65_A1.0301.00
34_P54_V1.0261.00
22_K67_Y1.0261.00
26_I73_V1.0121.00
80_K110_R1.0011.00
51_T88_F0.9951.00
44_G49_E0.9841.00
80_K114_D0.9671.00
63_E68_M0.9571.00
83_K110_R0.9431.00
76_F120_T0.9401.00
81_D84_D0.9021.00
72_V96_F0.8781.00
80_K116_L0.8771.00
32_Q61_V0.8691.00
75_S92_Y0.8611.00
85_F105_T0.8581.00
48_E91_V0.8571.00
60_A63_E0.8571.00
55_I95_Y0.8441.00
47_I84_D0.8441.00
34_P50_Q0.8431.00
90_E94_K0.8421.00
69_L72_V0.8391.00
20_G61_V0.8321.00
80_K108_V0.8291.00
41_E44_G0.8251.00
59_K95_Y0.8071.00
55_I119_I0.8071.00
70_D97_S0.8041.00
91_V95_Y0.7891.00
37_P53_R0.7851.00
46_N116_L0.7761.00
75_S96_F0.7751.00
25_D124_Q0.7701.00
29_V104_V0.7621.00
35_V40_N0.7531.00
67_Y124_Q0.7441.00
48_E52_I0.7260.99
45_K49_E0.7260.99
16_P89_N0.7240.99
93_S100_P0.7130.99
55_I69_L0.7110.99
14_I113_R0.7100.99
36_D40_N0.7060.99
47_I117_I0.7050.99
20_G27_L0.7050.99
45_K50_Q0.7040.99
47_I91_V0.7030.99
86_Q90_E0.7030.99
89_N92_Y0.7020.99
69_L95_Y0.6890.99
79_L82_I0.6860.99
19_Q61_V0.6820.99
72_V123_A0.6820.99
29_V58_I0.6810.99
82_I110_R0.6700.99
43_V53_R0.6680.99
54_V119_I0.6630.99
80_K109_S0.6590.99
9_K60_A0.6570.99
78_Y120_T0.6570.99
51_T117_I0.6560.99
55_I92_Y0.6450.99
27_L123_A0.6430.99
56_E60_A0.6420.99
74_M104_V0.6380.99
77_V119_I0.6380.99
39_T43_V0.6300.99
21_V73_V0.6300.99
24_G124_Q0.6300.99
81_D116_L0.6240.98
20_G65_A0.6220.98
36_D41_E0.6150.98
76_F104_V0.6050.98
19_Q64_A0.5990.98
49_E52_I0.5980.98
79_L84_D0.5780.98
48_E94_K0.5750.97
23_V28_Y0.5740.97
17_Y31_G0.5720.97
62_L69_L0.5700.97
70_D98_N0.5690.97
33_I113_R0.5680.97
43_V49_E0.5620.97
46_N87_R0.5600.97
18_S21_V0.5590.97
89_N93_S0.5560.97
37_P60_A0.5550.97
44_G50_Q0.5530.97
21_V102_A0.5510.97
23_V26_I0.5500.97
62_L121_V0.5480.97
9_K38_K0.5340.96
34_P42_V0.5330.96
55_I77_V0.5250.96
77_V117_I0.5230.96
74_M102_A0.5220.95
10_A20_G0.5200.95
61_V64_A0.5160.95
33_I54_V0.5130.95
19_Q60_A0.5130.95
30_S102_A0.5110.95
54_V117_I0.5110.95
44_G116_L0.5070.95
77_V103_R0.5070.95
76_F106_V0.5060.95
46_N50_Q0.5050.95
53_R60_A0.5040.95
43_V46_N0.5010.94
67_Y123_A0.5000.94
32_Q58_I0.5000.94
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2b33A 3 0.9921 100 0.132 Contact Map
1xrgA 3 0.9921 100 0.142 Contact Map
2dyyA 3 1 100 0.15 Contact Map
3vczA 5 0.9762 100 0.16 Contact Map
3l7qA 3 0.9841 100 0.16 Contact Map
1qahA 3 1 100 0.161 Contact Map
3r0pA 5 0.9921 100 0.161 Contact Map
2cvlA 3 0.9841 100 0.167 Contact Map
3m1xA 3 0.9841 100 0.167 Contact Map
1x25A 3 1 100 0.168 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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