Q97U17 - SULSO - GREMLIN Contacts

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Q97U17 - Oxidoreductase, aldo/keto reductase family

UniProt:	Q97U17	Sequences: MRLCNKDVSQIGFGTWKIGGGYWNPDYSKDSHYIEILKYVISKGINVIDTAEMYGGGHSEELVGKAIENFDRDKIFIITKVWSNHLKYDDLIRSAKNSLKRLNAKYIDLYLIHWPNSSVPLEESLRAMEELVDQGIVNCIGVSNFDIKLLEETMSITKKYEITANEIEYNVENKSAEKDVIPFCERNNIKVIAYSPLARGNAKNNKILEEIGRKYNKTSVQVALNYLLRRSIPIPKASSKDHIDEILGALGWNLSDEDYERISKI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	265 (248)
Sequences:	32268 (20526)
Seq/√Len:	1303.4

ECOLI - YDJG YAJO YDHF YEAE GPR TAS YDBC DKGB DKGA
BACSU - IOLS YCCK YCSN YTBE GS69 YRPG GR YQKF
HALSA - Q9HPH9 Q9HQU7 Q9HNN3 Q9HS02 Q9HSE6 Q9HQT1
SULSO - Q97U17 Q97UV9 Q97UG6 Q97V56 Q97ZZ1 Q97UJ7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
39_Y	244_D	3.111	1.00
96_K	136_I	2.960	1.00
30_D	65_K	2.861	1.00
68_E	103_N	2.778	1.00
215_Y	258_D	2.659	1.00
255_S	258_D	2.442	1.00
95_A	131_L	2.437	1.00
34_I	69_N	2.422	1.00
92_I	130_E	2.367	1.00
92_I	134_Q	2.336	1.00
39_Y	43_K	2.277	1.00
214_K	261_R	2.157	1.00
34_I	65_K	2.009	1.00
97_N	101_R	1.991	1.00
209_E	213_R	1.986	1.00
129_E	133_D	1.959	1.00
214_K	258_D	1.950	1.00
229_R	259_Y	1.937	1.00
256_D	260_E	1.924	1.00
106_Y	138_N	1.920	1.00
130_E	134_Q	1.918	1.00
183_F	187_N	1.916	1.00
71_D	74_K	1.865	1.00
210_E	261_R	1.839	1.00
240_K	244_D	1.834	1.00
184_C	191_V	1.828	1.00
88_Y	130_E	1.780	1.00
77_I	104_A	1.768	1.00
12_G	47_V	1.760	1.00
230_R	263_S	1.728	1.00
111_L	164_A	1.725	1.00
39_Y	240_K	1.718	1.00
58_H	61_E	1.706	1.00
151_E	155_S	1.697	1.00
217_K	252_W	1.688	1.00
130_E	133_D	1.683	1.00
79_T	107_I	1.681	1.00
43_K	244_D	1.680	1.00
40_V	45_I	1.631	1.00
190_K	232_I	1.614	1.00
225_N	252_W	1.604	1.00
61_E	101_R	1.599	1.00
88_Y	92_I	1.599	1.00
79_T	98_S	1.596	1.00
29_K	32_H	1.592	1.00
218_T	245_E	1.591	1.00
43_K	247_L	1.577	1.00
34_I	66_A	1.577	1.00
81_V	110_Y	1.564	1.00
151_E	183_F	1.547	1.00
34_I	38_K	1.541	1.00
38_K	69_N	1.540	1.00
81_V	91_L	1.540	1.00
207_I	210_E	1.540	1.00
92_I	96_K	1.537	1.00
39_Y	42_S	1.536	1.00
95_A	110_Y	1.513	1.00
78_I	111_L	1.502	1.00
248_G	251_G	1.495	1.00
127_A	130_E	1.478	1.00
15_T	48_I	1.471	1.00
6_K	139_C	1.437	1.00
52_E	94_S	1.434	1.00
182_P	186_R	1.424	1.00
129_E	160_Y	1.420	1.00
93_R	97_N	1.417	1.00
185_E	231_S	1.402	1.00
41_I	75_I	1.399	1.00
111_L	192_I	1.397	1.00
217_K	221_Q	1.391	1.00
107_I	137_V	1.384	1.00
96_K	100_K	1.375	1.00
179_D	182_P	1.356	1.00
30_D	34_I	1.345	1.00
32_H	35_E	1.345	1.00
37_L	66_A	1.343	1.00
139_C	163_T	1.342	1.00
146_D	149_L	1.334	1.00
132_V	160_Y	1.334	1.00
6_K	76_F	1.329	1.00
244_D	248_G	1.328	1.00
154_M	187_N	1.324	1.00
167_I	191_V	1.321	1.00
225_N	229_R	1.300	1.00
88_Y	126_R	1.277	1.00
97_N	100_K	1.262	1.00
237_A	242_H	1.260	1.00
38_K	42_S	1.257	1.00
131_L	137_V	1.248	1.00
35_E	39_Y	1.240	1.00
92_I	127_A	1.239	1.00
88_Y	127_A	1.238	1.00
217_K	222_V	1.237	1.00
154_M	183_F	1.231	1.00
76_F	109_L	1.225	1.00
237_A	243_I	1.200	1.00
137_V	140_I	1.193	1.00
60_E	98_S	1.192	1.00
147_I	183_F	1.187	1.00
210_E	214_K	1.183	1.00
65_K	103_N	1.181	1.00
218_T	221_Q	1.177	1.00
102_L	107_I	1.170	1.00
72_R	104_A	1.165	1.00
122_E	156_I	1.164	1.00
133_D	158_K	1.157	1.00
207_I	261_R	1.156	1.00
64_G	103_N	1.155	1.00
109_L	164_A	1.155	1.00
181_I	185_E	1.152	1.00
72_R	106_Y	1.144	1.00
48_I	63_V	1.142	1.00
172_E	205_N	1.138	1.00
87_K	90_D	1.131	1.00
169_Y	230_R	1.127	1.00
241_D	244_D	1.127	1.00
4_C	139_C	1.108	1.00
209_E	219_S	1.102	1.00
95_A	107_I	1.101	1.00
89_D	93_R	1.097	1.00
61_E	65_K	1.096	1.00
151_E	186_R	1.095	1.00
211_I	222_V	1.094	1.00
115_P	149_L	1.093	1.00
132_V	163_T	1.086	1.00
90_D	93_R	1.081	1.00
123_E	126_R	1.077	1.00
47_V	192_I	1.067	1.00
36_I	243_I	1.061	1.00
129_E	132_V	1.059	1.00
227_L	233_P	1.057	1.00
31_S	35_E	1.049	1.00
128_M	140_I	1.045	1.00
47_V	78_I	1.041	1.00
96_K	134_Q	1.040	1.00
112_I	128_M	1.032	1.00
38_K	66_A	1.029	1.00
86_L	112_I	1.029	1.00
151_E	187_N	1.024	1.00
171_V	262_I	1.020	1.00
210_E	213_R	1.018	1.00
206_K	210_E	1.014	1.00
131_L	136_I	1.003	1.00
228_L	249_A	1.003	1.00
35_E	240_K	1.002	1.00
15_T	63_V	0.999	1.00
46_N	76_F	0.998	1.00
208_L	219_S	0.995	1.00
221_Q	248_G	0.994	1.00
147_I	151_E	0.993	1.00
206_K	209_E	0.982	1.00
152_E	156_I	0.975	1.00
9_S	46_N	0.972	1.00
171_V	223_A	0.971	1.00
243_I	247_L	0.970	1.00
164_A	192_I	0.961	1.00
122_E	152_E	0.958	1.00
176_A	191_V	0.949	1.00
65_K	69_N	0.947	1.00
9_S	45_I	0.945	1.00
60_E	101_R	0.942	1.00
4_C	163_T	0.939	1.00
142_V	162_I	0.934	1.00
192_I	232_I	0.929	1.00
182_P	185_E	0.927	1.00
88_Y	123_E	0.920	1.00
178_K	182_P	0.919	1.00
10_Q	228_L	0.914	1.00
61_E	100_K	0.913	1.00
108_D	138_N	0.911	1.00
92_I	95_A	0.906	1.00
67_I	75_I	0.895	1.00
131_L	134_Q	0.893	1.00
126_R	130_E	0.889	1.00
52_E	90_D	0.887	1.00
221_Q	245_E	0.887	1.00
241_D	245_E	0.884	1.00
245_E	248_G	0.882	1.00
85_H	90_D	0.877	1.00
127_A	131_L	0.875	1.00
41_I	71_D	0.867	1.00
37_L	48_I	0.864	1.00
78_I	192_I	0.862	1.00
129_E	158_K	0.861	1.00
211_I	215_Y	0.860	1.00
10_Q	250_L	0.859	1.00
165_N	184_C	0.856	1.00
142_V	150_L	0.854	1.00
224_L	249_A	0.853	1.00
93_R	96_K	0.843	1.00
140_I	162_I	0.843	1.00
260_E	263_S	0.837	1.00
229_R	253_N	0.834	1.00
214_K	255_S	0.833	1.00
52_E	85_H	0.830	1.00
30_D	58_H	0.830	1.00
239_S	242_H	0.827	1.00
183_F	186_R	0.825	1.00
257_E	261_R	0.825	1.00
35_E	38_K	0.822	1.00
230_R	259_Y	0.817	1.00
257_E	260_E	0.814	1.00
126_R	129_E	0.813	1.00
129_E	140_I	0.810	1.00
4_C	132_V	0.805	1.00
152_E	155_S	0.799	1.00
78_I	109_L	0.797	1.00
215_Y	255_S	0.794	1.00
223_A	227_L	0.793	1.00
169_Y	181_I	0.789	1.00
158_K	161_E	0.787	1.00
52_E	101_R	0.787	1.00
92_I	131_L	0.780	1.00
144_N	194_Y	0.778	1.00
13_F	40_V	0.776	1.00
225_N	249_A	0.775	1.00
15_T	59_S	0.771	1.00
150_L	189_I	0.760	1.00
99_L	136_I	0.759	1.00
79_T	110_Y	0.759	1.00
229_R	256_D	0.747	1.00
147_I	180_V	0.746	1.00
193_A	196_P	0.743	1.00
181_I	191_V	0.742	1.00
177_E	182_P	0.741	1.00
217_K	251_G	0.738	1.00
196_P	235_P	0.737	1.00
50_T	63_V	0.737	1.00
39_Y	243_I	0.734	1.00
52_E	97_N	0.723	1.00
238_S	242_H	0.715	1.00
43_K	248_G	0.715	1.00
125_L	162_I	0.714	1.00
180_V	184_C	0.713	1.00
193_A	233_P	0.704	1.00
125_L	153_T	0.702	1.00
95_A	136_I	0.696	1.00
38_K	71_D	0.694	1.00
13_F	18_I	0.693	1.00
129_E	157_T	0.687	1.00
36_I	240_K	0.686	1.00
125_L	140_I	0.686	1.00
12_G	235_P	0.684	1.00
154_M	161_E	0.683	1.00
86_L	124_S	0.682	1.00
181_I	230_R	0.682	1.00
114_W	144_N	0.679	1.00
45_I	247_L	0.678	1.00
99_L	104_A	0.676	1.00
98_S	110_Y	0.675	1.00
142_V	165_N	0.673	1.00
41_I	48_I	0.669	1.00
147_I	179_D	0.667	1.00
184_C	189_I	0.666	1.00
215_Y	222_V	0.660	1.00
33_Y	62_L	0.660	1.00
222_V	252_W	0.657	1.00
220_V	245_E	0.653	1.00
211_I	261_R	0.653	1.00
73_D	106_Y	0.653	1.00
6_K	138_N	0.652	1.00
17_K	199_R	0.652	1.00
94_S	97_N	0.652	1.00
111_L	141_G	0.652	1.00
212_G	222_V	0.651	1.00
37_L	41_I	0.650	1.00
142_V	145_F	0.650	1.00
11_I	228_L	0.648	1.00
91_L	131_L	0.647	1.00
254_L	259_Y	0.646	1.00
242_H	245_E	0.645	1.00
208_L	262_I	0.645	1.00
213_R	216_N	0.644	1.00
196_P	227_L	0.641	1.00
91_L	124_S	0.641	1.00
107_I	110_Y	0.640	1.00
132_V	139_C	0.639	1.00
31_S	34_I	0.639	1.00
43_K	243_I	0.637	1.00
46_N	74_K	0.634	1.00
226_Y	263_S	0.634	1.00
169_Y	227_L	0.632	1.00
217_K	225_N	0.632	1.00
211_I	258_D	0.627	1.00
124_S	127_A	0.626	1.00
87_K	124_S	0.621	1.00
121_L	156_I	0.620	1.00
222_V	254_L	0.615	1.00
16_W	195_S	0.613	1.00
128_M	132_V	0.610	1.00
208_L	223_A	0.610	1.00
53_M	82_W	0.609	1.00
132_V	137_V	0.609	1.00
205_N	209_E	0.609	1.00
217_K	248_G	0.607	1.00
71_D	75_I	0.603	1.00
91_L	127_A	0.603	1.00
18_I	33_Y	0.601	1.00
169_Y	177_E	0.595	1.00
169_Y	191_V	0.595	1.00
8_V	232_I	0.589	1.00
151_E	154_M	0.589	1.00
32_H	240_K	0.589	1.00
36_I	237_A	0.586	1.00
99_L	106_Y	0.585	1.00
70_F	75_I	0.585	1.00
254_L	258_D	0.584	1.00
95_A	99_L	0.583	1.00
120_P	152_E	0.582	1.00
201_N	205_N	0.581	1.00
12_G	232_I	0.581	1.00
41_I	46_N	0.577	1.00
99_L	105_K	0.577	1.00
212_G	219_S	0.576	1.00
19_G	59_S	0.572	1.00
99_L	107_I	0.568	1.00
92_I	136_I	0.568	1.00
8_V	47_V	0.568	1.00
58_H	62_L	0.567	1.00
172_E	201_N	0.565	1.00
258_D	261_R	0.564	1.00
202_A	223_A	0.562	1.00
121_L	124_S	0.562	1.00
171_V	226_Y	0.561	1.00
221_Q	252_W	0.561	1.00
116_N	119_V	0.560	1.00
52_E	82_W	0.558	1.00
222_V	258_D	0.556	1.00
42_S	240_K	0.555	1.00
30_D	62_L	0.554	1.00
110_Y	128_M	0.553	1.00
20_G	62_L	0.553	1.00
49_D	166_E	0.552	1.00
72_R	108_D	0.552	1.00
149_L	152_E	0.551	1.00
81_V	86_L	0.551	1.00
228_L	233_P	0.548	1.00
18_I	36_I	0.548	1.00
237_A	246_I	0.547	1.00
195_S	199_R	0.545	1.00
50_T	59_S	0.543	1.00
83_S	86_L	0.541	1.00
81_V	94_S	0.539	1.00
41_I	74_K	0.536	1.00
142_V	153_T	0.535	1.00
175_S	178_K	0.535	1.00
13_F	36_I	0.534	1.00
212_G	215_Y	0.533	1.00
110_Y	137_V	0.532	1.00
240_K	243_I	0.530	1.00
148_K	151_E	0.529	1.00
11_I	250_L	0.527	1.00
122_E	126_R	0.524	1.00
47_V	76_F	0.521	1.00
211_I	214_K	0.519	1.00
112_I	124_S	0.519	1.00
48_I	67_I	0.518	1.00
60_E	79_T	0.518	1.00
37_L	63_V	0.514	1.00
215_Y	252_W	0.512	1.00
12_G	234_I	0.511	1.00
88_Y	91_L	0.510	1.00
154_M	189_I	0.510	1.00
55_G	58_H	0.510	1.00
121_L	149_L	0.509	1.00
63_V	66_A	0.508	1.00
121_L	152_E	0.507	1.00
157_T	162_I	0.505	1.00
249_A	252_W	0.503	1.00
225_N	253_N	0.503	1.00
222_V	262_I	0.501	1.00
125_L	157_T	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1pyfA	1	0.9849	100	0.08	Contact Map
3v0sA	1	0.9321	100	0.085	Contact Map
4xk2A	5	0.9547	100	0.089	Contact Map
3n2tA	1	0.9774	100	0.092	Contact Map
1pz1A	1	0.9811	100	0.096	Contact Map
4r9oA	5	0.9774	100	0.097	Contact Map
5c7hA	1	0.9736	100	0.1	Contact Map
4wghA	1	0.9736	100	0.106	Contact Map
3lutA	3	0.9774	100	0.108	Contact Map
3erpA	6	0.9774	100	0.109	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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