GREMLIN Database
Q97U12 - tRNA(Met) cytidine acetyltransferase TmcA
UniProt: Q97U12 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 770 (663)
Sequences: 717 (487)
Seq/√Len: 18.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
553_Y605_R8.3731.00
566_S603_V8.2421.00
213_I240_A7.7221.00
471_I544_F6.8761.00
480_A535_V6.1091.00
509_I565_G5.2871.00
549_L581_N4.9841.00
549_L583_F4.5671.00
106_F111_I4.4981.00
546_S581_N4.4031.00
530_I549_L4.1811.00
710_A721_V4.0631.00
486_E528_W3.9551.00
264_V275_V3.6791.00
279_A310_L3.5511.00
586_V604_I3.3141.00
553_Y583_F3.1830.99
569_M574_V3.1790.99
272_A275_V3.0710.99
509_I602_V3.0490.99
445_M481_A3.0400.99
569_M598_D3.0200.99
527_G563_W2.9550.99
96_D119_R2.9350.99
154_R435_D2.9000.99
626_L645_M2.8950.99
326_L346_W2.8660.99
245_I327_I2.8540.99
267_P333_A2.8450.99
239_A278_F2.8300.99
482_C552_I2.8140.99
53_S56_Y2.7870.98
424_E472_R2.7670.98
482_C548_L2.7590.98
204_S213_I2.7310.98
53_S58_F2.6820.98
621_M665_K2.6760.98
60_P64_G2.5970.97
585_P601_V2.5040.97
441_I468_I2.4980.97
537_P540_Q2.4890.97
508_L567_S2.4770.97
716_K724_V2.4330.96
497_I502_G2.4240.96
513_I586_V2.4100.96
421_M544_F2.4020.96
363_K569_M2.3970.96
441_I478_Y2.3360.95
441_I460_M2.2920.95
212_V229_L2.2760.94
512_R587_H2.2180.94
710_A724_V2.2070.94
630_L642_V2.1120.92
528_W561_V2.1090.92
408_D439_R2.1080.92
109_I455_D2.0920.92
562_D608_S2.0760.91
53_S60_P2.0670.91
177_P181_N2.0610.91
266_A312_Y2.0460.91
708_L732_I2.0450.91
584_I619_A2.0390.90
441_I481_A2.0330.90
431_L434_D2.0060.90
710_A716_K2.0010.90
721_V732_I1.9930.89
351_L368_Y1.9720.89
106_F440_A1.9690.89
222_G225_R1.9660.89
112_G405_L1.9550.88
58_F64_G1.9510.88
139_T458_M1.9510.88
519_I618_S1.9310.88
328_I351_L1.9290.88
423_Y467_K1.9170.87
711_K718_W1.8920.87
94_T120_G1.8910.87
676_Y718_W1.8580.86
213_I243_L1.8560.86
56_Y59_V1.8510.85
325_L350_A1.8410.85
466_H483_Q1.8330.85
243_L282_G1.8180.84
326_L342_A1.7910.83
512_R602_V1.7690.83
709_I713_L1.7580.82
150_E429_S1.7280.81
471_I480_A1.7140.81
479_I544_F1.7060.80
363_K368_Y1.6800.79
53_S69_M1.6690.79
409_A443_G1.6660.79
219_L227_L1.6650.79
213_I692_W1.6460.78
228_V369_L1.6280.77
449_H532_R1.6280.77
407_L575_L1.6260.77
216_F227_L1.6200.77
100_L120_G1.6140.76
71_T75_Y1.6100.76
451_K595_K1.5930.75
478_Y648_S1.5770.75
729_R737_Y1.5640.74
59_V65_S1.5560.74
229_L383_V1.5550.74
53_S57_G1.5390.73
245_I275_V1.5330.72
264_V536_A1.5330.72
707_V725_L1.5290.72
101_D451_K1.5250.72
129_N134_D1.5220.72
728_N731_H1.5170.72
227_L325_L1.5170.72
323_G733_Y1.5090.71
624_E662_I1.5080.71
622_L626_L1.5040.71
111_I401_L1.5030.71
334_L708_L1.4920.70
244_S325_L1.4900.70
152_E230_T1.4850.70
353_T365_F1.4840.70
115_V401_L1.4800.70
216_F225_R1.4760.70
446_V585_P1.4680.69
154_R565_G1.4660.69
440_A477_S1.4630.69
53_S64_G1.4540.68
480_A548_L1.4480.68
339_I368_Y1.4360.67
54_V64_G1.4330.67
527_G565_G1.4330.67
437_R472_R1.4330.67
588_I678_S1.4330.67
327_I460_M1.4270.67
241_T352_V1.4240.67
530_I581_N1.4230.67
239_A274_Q1.4210.66
229_L588_I1.4190.66
326_L349_V1.4160.66
589_S593_N1.4110.66
267_P334_L1.4100.66
451_K593_N1.4070.66
363_K574_V1.4060.66
65_S69_M1.3990.65
87_A113_R1.3990.65
63_S68_R1.3980.65
392_A396_P1.3850.64
676_Y711_K1.3750.64
336_I368_Y1.3720.64
437_R478_Y1.3680.63
71_T77_S1.3680.63
59_V64_G1.3660.63
444_I540_Q1.3520.63
62_A70_R1.3480.62
266_A355_V1.3400.62
431_L461_L1.3370.62
70_R564_V1.3360.62
334_L361_S1.3280.61
107_Q455_D1.3280.61
469_K555_E1.3270.61
562_D673_V1.3250.61
444_I508_L1.3230.61
60_P68_R1.3150.60
154_R353_T1.3090.60
154_R158_K1.3080.60
460_M514_I1.3060.60
129_N364_A1.3010.59
60_P65_S1.2990.59
71_T74_E1.2920.59
372_L395_D1.2900.59
712_V736_I1.2890.59
54_V57_G1.2890.59
216_F350_A1.2800.58
215_S381_K1.2780.58
266_A542_K1.2760.58
241_T262_I1.2750.58
665_K669_F1.2730.58
388_P619_A1.2730.58
56_Y64_G1.2680.57
387_Q393_K1.2610.57
280_K284_E1.2610.57
264_V276_M1.2540.57
599_Y634_Y1.2480.56
503_T589_S1.2460.56
64_G68_R1.2440.56
263_I313_V1.2420.56
66_K69_M1.2400.56
445_M595_K1.2290.55
395_D438_L1.2270.55
364_A368_Y1.2220.55
530_I607_I1.2180.54
609_D613_K1.2170.54
587_H593_N1.2140.54
739_A743_L1.2090.54
229_L468_I1.2060.54
539_L542_K1.2050.54
399_K403_D1.2020.53
343_L557_R1.2010.53
96_D122_G1.2000.53
515_K528_W1.1990.53
540_Q545_G1.1990.53
527_G540_Q1.1940.53
54_V59_V1.1940.53
530_I655_T1.1940.53
435_D565_G1.1920.53
568_F668_S1.1910.53
225_R348_K1.1900.53
707_V713_L1.1880.52
410_E439_R1.1860.52
60_P444_I1.1790.52
55_A60_P1.1770.52
359_E390_R1.1710.51
471_I479_I1.1700.51
464_I543_G1.1700.51
60_P72_I1.1670.51
583_F710_A1.1610.51
546_S549_L1.1610.51
54_V58_F1.1530.50
103_V127_Y1.1510.50
59_V68_R1.1500.50
630_L716_K1.1440.50
272_A352_V1.1410.49
116_D452_N1.1380.49
553_Y564_V1.1350.49
163_E554_E1.1300.49
639_P724_V1.1290.49
696_R699_S1.1260.49
73_K76_F1.1250.48
363_K389_L1.1250.48
686_L743_L1.1220.48
154_R462_D1.1200.48
216_F222_G1.1170.48
68_R72_I1.1100.48
423_Y549_L1.1090.47
327_I502_G1.1030.47
341_L497_I1.1030.47
232_A426_V1.0980.47
141_I458_M1.0950.47
114_L117_L1.0920.46
350_A451_K1.0920.46
219_L223_G1.0900.46
342_A402_Y1.0880.46
700_L705_E1.0880.46
576_N580_K1.0880.46
556_A564_V1.0880.46
359_E449_H1.0870.46
390_R449_H1.0870.46
339_I596_L1.0850.46
326_L606_P1.0850.46
548_L552_I1.0800.46
574_V598_D1.0790.46
229_L573_K1.0790.46
69_M737_Y1.0740.45
359_E532_R1.0720.45
390_R532_R1.0720.45
511_D589_S1.0720.45
270_A382_W1.0700.45
743_L748_Y1.0670.45
494_M498_A1.0650.45
57_G61_W1.0650.45
541_D573_K1.0620.45
159_L666_T1.0610.44
582_G726_S1.0540.44
717_P732_I1.0520.44
360_G390_R1.0500.44
72_I76_F1.0450.43
106_F463_G1.0440.43
63_S75_Y1.0430.43
626_L634_Y1.0430.43
339_I364_A1.0420.43
54_V68_R1.0400.43
553_Y557_R1.0400.43
60_P316_D1.0370.43
226_A380_V1.0350.43
118_A271_S1.0330.43
216_F223_G1.0330.43
69_M75_Y1.0310.43
701_T704_E1.0310.43
437_R441_I1.0300.43
273_S480_A1.0270.42
155_F380_V1.0270.42
686_L747_Y1.0200.42
122_G241_T1.0190.42
659_S720_Y1.0190.42
460_M468_I1.0180.42
509_I527_G1.0170.42
503_T721_V1.0160.42
92_G359_E1.0140.42
92_G390_R1.0140.42
705_E709_I1.0140.42
67_E74_E1.0110.41
510_P531_V1.0100.41
343_L540_Q1.0090.41
570_S575_L1.0010.41
265_T328_I1.0010.41
128_T134_D0.9970.41
125_I328_I0.9960.40
451_K483_Q0.9930.40
668_S678_S0.9930.40
370_R374_E0.9920.40
431_L460_M0.9890.40
459_I463_G0.9870.40
383_V408_D0.9860.40
353_T435_D0.9860.40
340_D679_S0.9820.40
98_V219_L0.9820.40
391_Y598_D0.9800.39
389_L446_V0.9790.39
490_L523_A0.9750.39
211_R620_Y0.9730.39
460_M671_Q0.9710.39
265_T268_S0.9680.39
360_G449_H0.9610.38
512_R589_S0.9590.38
321_D326_L0.9580.38
55_A58_F0.9570.38
262_I732_I0.9570.38
98_V352_V0.9560.38
246_A282_G0.9560.38
216_F219_L0.9550.38
373_I380_V0.9550.38
283_L552_I0.9530.38
229_L352_V0.9500.38
493_N591_K0.9500.38
502_G600_P0.9490.38
360_G532_R0.9480.38
453_N563_W0.9480.38
343_L349_V0.9470.38
69_M77_S0.9460.37
485_A531_V0.9460.37
79_F84_Y0.9450.37
62_A67_E0.9430.37
373_I382_W0.9430.37
226_A507_D0.9400.37
608_S611_A0.9400.37
111_I349_V0.9390.37
489_E514_I0.9390.37
158_K437_R0.9380.37
116_D483_Q0.9380.37
516_H591_K0.9380.37
514_I569_M0.9370.37
508_L589_S0.9340.37
568_F603_V0.9340.37
547_E551_M0.9330.37
276_M443_G0.9330.37
216_F229_L0.9310.37
589_S594_E0.9280.36
99_I739_A0.9260.36
92_G449_H0.9260.36
490_L603_V0.9250.36
241_T350_A0.9230.36
54_V67_E0.9220.36
523_A552_I0.9220.36
585_P622_L0.9200.36
425_D469_K0.9200.36
213_I327_I0.9190.36
590_P677_E0.9190.36
396_P407_L0.9180.36
61_W65_S0.9170.36
458_M504_F0.9170.36
92_G532_R0.9120.35
728_N734_E0.9110.35
484_I528_W0.9090.35
118_A124_I0.9080.35
125_I383_V0.9070.35
481_A600_P0.9070.35
120_G400_W0.9040.35
595_K603_V0.9030.35
451_K527_G0.9020.35
229_L238_S0.9020.35
406_L599_Y0.9020.35
57_G62_A0.9010.35
262_I720_Y0.9000.35
210_N385_M0.9000.35
338_Y342_A0.8970.35
588_I679_S0.8950.34
463_G569_M0.8950.34
117_L239_A0.8920.34
683_I744_M0.8920.34
601_V682_G0.8910.34
116_D364_A0.8880.34
283_L723_T0.8870.34
92_G360_G0.8850.34
115_V341_L0.8850.34
683_I736_I0.8830.34
227_L545_G0.8830.34
503_T511_D0.8820.34
227_L397_I0.8810.34
452_N483_Q0.8800.34
246_A539_L0.8790.34
62_A66_K0.8780.34
276_M343_L0.8750.33
408_D537_P0.8750.33
541_D581_N0.8750.33
463_G604_I0.8730.33
151_Y385_M0.8720.33
70_R161_E0.8690.33
53_S72_I0.8680.33
490_L510_P0.8670.33
665_K681_D0.8670.33
700_L704_E0.8630.33
349_V582_G0.8630.33
459_I471_I0.8620.33
361_S512_R0.8620.33
349_V353_T0.8610.33
518_R589_S0.8580.32
53_S61_W0.8540.32
718_W733_Y0.8540.32
638_N658_V0.8530.32
328_I387_Q0.8520.32
124_I397_I0.8500.32
208_D386_E0.8500.32
641_V679_S0.8490.32
438_L443_G0.8480.32
134_D367_R0.8460.32
164_G396_P0.8460.32
229_L433_N0.8440.32
396_P550_K0.8440.32
211_R476_N0.8420.32
366_L675_P0.8410.31
563_W705_E0.8400.31
233_R450_Y0.8390.31
233_R529_R0.8390.31
450_Y529_R0.8390.31
135_K156_K0.8360.31
364_A596_L0.8350.31
88_E361_S0.8350.31
378_I540_Q0.8340.31
68_R76_F0.8330.31
128_T152_E0.8320.31
389_L526_R0.8320.31
348_K363_K0.8310.31
72_I620_Y0.8300.31
155_F211_R0.8270.31
118_A677_E0.8260.31
246_A327_I0.8250.31
245_I312_Y0.8250.31
58_F61_W0.8240.31
61_W69_M0.8240.31
315_P577_F0.8240.31
53_S59_V0.8230.31
351_L568_F0.8220.30
317_A676_Y0.8220.30
591_K721_V0.8200.30
228_V266_A0.8190.30
161_E370_R0.8160.30
579_I644_L0.8160.30
491_S636_N0.8150.30
456_D488_G0.8110.30
216_F325_L0.8100.30
277_S281_L0.8090.30
740_I744_M0.8090.30
391_Y452_N0.8080.30
488_G510_P0.8080.30
488_G574_V0.8070.30
60_P503_T0.8050.30
94_T316_D0.8040.30
92_G568_F0.8040.30
407_L549_L0.8040.30
72_I75_Y0.8030.29
516_H587_H0.8030.29
340_D371_R0.8010.29
451_K599_Y0.8010.29
510_P527_G0.7980.29
90_Y322_E0.7970.29
267_P522_F0.7970.29
521_D542_K0.7970.29
271_S353_T0.7950.29
467_K486_E0.7950.29
346_W451_K0.7920.29
743_L747_Y0.7920.29
141_I587_H0.7910.29
462_D565_G0.7900.29
405_L507_D0.7890.29
64_G596_L0.7870.29
729_R744_M0.7860.29
245_I351_L0.7840.28
470_A734_E0.7840.28
68_R73_K0.7810.28
53_S74_E0.7810.28
312_Y442_Y0.7810.28
554_E560_G0.7790.28
572_Q717_P0.7780.28
739_A744_M0.7770.28
350_A481_A0.7770.28
90_Y117_L0.7750.28
659_S740_I0.7750.28
176_K394_G0.7750.28
323_G326_L0.7730.28
229_L440_A0.7730.28
54_V69_M0.7730.28
707_V735_L0.7720.28
94_T113_R0.7690.28
312_Y485_A0.7690.28
707_V716_K0.7680.28
645_M702_Q0.7680.28
98_V120_G0.7680.28
59_V63_S0.7660.28
72_I78_K0.7650.27
523_A562_D0.7640.27
554_E610_I0.7640.27
465_H485_A0.7640.27
184_P651_I0.7630.27
56_Y61_W0.7610.27
314_P388_P0.7590.27
108_P122_G0.7590.27
665_K674_S0.7580.27
554_E657_N0.7540.27
470_A478_Y0.7520.27
593_N598_D0.7520.27
229_L596_L0.7520.27
123_L503_T0.7510.27
127_Y574_V0.7510.27
719_S729_R0.7510.27
145_G383_V0.7500.27
271_S531_V0.7490.27
111_I402_Y0.7480.27
725_L739_A0.7480.27
541_D580_K0.7470.27
373_I377_R0.7460.27
123_L575_L0.7450.27
263_I584_I0.7450.27
60_P69_M0.7440.26
710_A725_L0.7430.26
365_F368_Y0.7420.26
232_A356_H0.7420.26
316_D480_A0.7420.26
416_Y604_I0.7410.26
394_G399_K0.7400.26
622_L646_L0.7400.26
245_I676_Y0.7390.26
386_E636_N0.7390.26
123_L373_I0.7390.26
502_G523_A0.7390.26
109_I509_I0.7390.26
668_S674_S0.7370.26
417_L474_G0.7360.26
464_I622_L0.7360.26
535_V715_G0.7360.26
404_A482_C0.7350.26
363_K598_D0.7330.26
233_R358_Y0.7320.26
358_Y450_Y0.7320.26
358_Y529_R0.7320.26
536_A540_Q0.7320.26
707_V711_K0.7320.26
73_K388_P0.7310.26
154_R226_A0.7300.26
206_S438_L0.7300.26
272_A571_D0.7290.26
131_L156_K0.7290.26
273_S539_L0.7260.26
386_E550_K0.7260.26
321_D328_I0.7250.26
334_L607_I0.7240.25
446_V634_Y0.7240.25
341_L658_V0.7240.25
110_N266_A0.7240.25
353_T744_M0.7240.25
610_I613_K0.7210.25
225_R397_I0.7200.25
98_V114_L0.7190.25
133_K137_F0.7190.25
262_I679_S0.7180.25
432_A461_L0.7170.25
247_G353_T0.7160.25
443_G446_V0.7160.25
141_I504_F0.7160.25
88_E512_R0.7160.25
108_P725_L0.7150.25
391_Y589_S0.7150.25
233_R359_E0.7150.25
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359_E529_R0.7150.25
390_R450_Y0.7150.25
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172_E388_P0.7140.25
334_L525_L0.7120.25
70_R75_Y0.7120.25
75_Y78_K0.7120.25
95_Y239_A0.7110.25
229_L546_S0.7110.25
442_Y451_K0.7100.25
142_M152_E0.7090.25
353_T723_T0.7080.25
544_F690_Y0.7060.25
112_G662_I0.7040.25
406_L530_I0.7040.25
493_N651_I0.7030.24
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204_S387_Q0.7020.24
473_I696_R0.7020.24
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230_T355_V0.7000.24
666_T739_A0.7000.24
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476_N645_M0.6980.24
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563_W566_S0.6980.24
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298_G396_P0.6400.22
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106_F392_A0.6390.22
106_F239_A0.6380.22
267_P454_P0.6370.22
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356_H402_Y0.6270.21
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426_V437_R0.6120.20
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443_G515_K0.5860.19
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352_V528_W0.5790.19
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305_G658_V0.5780.19
352_V447_T0.5760.19
532_R597_G0.5760.19
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108_P435_D0.5680.19
69_M72_I0.5670.19
196_M216_F0.5670.19
229_L319_I0.5660.19
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511_D517_V0.5660.19
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277_S722_S0.5660.19
266_A568_F0.5650.19
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92_G233_R0.5650.19
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393_K549_L0.5610.18
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264_V420_T0.5590.18
325_L630_L0.5590.18
454_P597_G0.5590.18
232_A442_Y0.5590.18
298_G302_S0.5590.18
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126_I155_F0.5580.18
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108_P565_G0.5560.18
249_I563_W0.5560.18
341_L635_F0.5550.18
392_A582_G0.5550.18
266_A606_P0.5550.18
412_S477_S0.5540.18
95_Y602_V0.5540.18
303_L538_E0.5540.18
259_S324_E0.5530.18
665_K679_S0.5530.18
489_E730_T0.5530.18
545_G577_F0.5530.18
134_D141_I0.5530.18
82_I261_R0.5520.18
120_G454_P0.5520.18
245_I548_L0.5520.18
391_Y593_N0.5520.18
196_M583_F0.5510.18
317_A571_D0.5500.18
225_R244_S0.5500.18
338_Y620_Y0.5500.18
181_N432_A0.5490.18
99_I734_E0.5490.18
167_I670_L0.5480.18
414_P613_K0.5480.18
586_V725_L0.5470.18
741_S744_M0.5470.18
84_Y120_G0.5470.18
509_I539_L0.5470.18
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65_S71_T0.5460.18
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314_P317_A0.5440.18
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492_D612_T0.5430.18
326_L508_L0.5430.18
493_N723_T0.5410.18
215_S602_V0.5410.18
517_V522_F0.5400.18
353_T740_I0.5400.18
358_Y449_H0.5390.18
387_Q547_E0.5390.18
260_I324_E0.5390.18
486_E526_R0.5390.18
61_W503_T0.5380.18
65_S72_I0.5380.18
109_I122_G0.5380.18
110_N512_R0.5380.18
367_R442_Y0.5370.18
469_K484_I0.5360.18
224_Q287_G0.5350.18
449_H597_G0.5350.18
411_P479_I0.5350.18
408_D455_D0.5350.18
355_V447_T0.5350.18
352_V355_V0.5340.17
56_Y60_P0.5330.17
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263_I618_S0.5330.17
559_K648_S0.5320.17
658_V662_I0.5320.17
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217_T342_A0.5310.17
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222_G350_A0.5300.17
245_I279_A0.5300.17
579_I585_P0.5300.17
151_Y490_L0.5300.17
339_I507_D0.5300.17
346_W571_D0.5290.17
476_N726_S0.5290.17
669_F674_S0.5280.17
484_I583_F0.5280.17
272_A726_S0.5280.17
86_N517_V0.5270.17
116_D402_Y0.5270.17
409_A435_D0.5270.17
400_W537_P0.5260.17
596_L675_P0.5260.17
108_P208_D0.5260.17
249_I489_E0.5260.17
406_L528_W0.5260.17
337_N421_M0.5250.17
372_L442_Y0.5250.17
625_K665_K0.5250.17
287_G303_L0.5250.17
180_G204_S0.5250.17
323_G638_N0.5240.17
64_G129_N0.5240.17
53_S63_S0.5220.17
360_G456_D0.5220.17
282_G544_F0.5200.17
176_K179_S0.5200.17
271_S424_E0.5200.17
395_D677_E0.5190.17
154_R405_L0.5190.17
670_L741_S0.5180.17
232_A402_Y0.5180.17
312_Y318_A0.5170.17
207_E277_S0.5170.17
263_I323_G0.5170.17
182_T586_V0.5170.17
182_T613_K0.5160.17
70_R387_Q0.5160.17
479_I535_V0.5160.17
675_P678_S0.5150.17
198_K261_R0.5150.17
264_V355_V0.5150.17
137_F140_S0.5130.17
221_S412_S0.5120.17
264_V453_N0.5110.17
494_M744_M0.5110.17
74_E492_D0.5110.17
341_L405_L0.5100.17
336_I367_R0.5100.17
442_Y596_L0.5090.17
232_A476_N0.5080.17
698_W743_L0.5080.17
91_L568_F0.5080.17
531_V615_V0.5080.17
405_L423_Y0.5070.17
175_P504_F0.5060.16
458_M669_F0.5060.16
608_S612_T0.5060.16
414_P493_N0.5060.16
445_M448_A0.5060.16
102_T105_N0.5050.16
279_A592_K0.5050.16
152_E346_W0.5040.16
128_T367_R0.5030.16
239_A563_W0.5020.16
55_A59_V0.5020.16
125_I421_M0.5010.16
202_E388_P0.5000.16
328_I650_K0.5000.16
56_Y68_R0.5000.16
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2zpaA 1 0.8455 100 0.479 Contact Map
2reeA 1 0.2182 99.6 0.934 Contact Map
3c26A 2 0.3065 99.4 0.94 Contact Map
1z4rA 1 0.2013 99.4 0.941 Contact Map
1kzfA 1 0.2312 99.3 0.945 Contact Map
1n71A 4 0.1948 99.2 0.945 Contact Map
3d8pA 1 0.1922 99.2 0.945 Contact Map
4znkA 1 0.2987 99.2 0.946 Contact Map
2g3aA 2 0.1779 99.2 0.946 Contact Map
2fiwA 2 0.1909 99.2 0.947 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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