Q97U07 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97U07 - Uncharacterized protein

UniProt:	Q97U07	Sequences: MILVGVDGGGSKTSAIAYTCSGSFLGKGLAGPANFHNVGVEEAVKNVNRAILLATKGMKPDVAYVGLAGVDSRYDYNIMAEALRSIAKNVYVDHDGFVALYAETRGNPGVIVIAGTGSVIVGYDGNRRVRFGGLGWLIADEGSAYWIGREALRAFGKMLDGRINKTIIADKIMKNLNINDVDDLIKWAYHEGHKVKDIASLAKIVDEAANEGDWIALDILKNAAFELASYAVQLAVKIGVDKIFLKGGMFNSSVYYNFFRNYLDNNNIKGVIAEHEPEQGALLLAFKYSECDSSVLNW	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	298 (280)
Sequences:	2608 (1973)
Seq/√Len:	117.9

SULSO - Q97U07 Q97ZG6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
19_T	23_S	5.088	1.00
66_G	98_V	3.520	1.00
171_K	208_A	3.368	1.00
256_Y	260_R	3.228	1.00
150_E	222_N	2.835	1.00
118_S	132_G	2.528	1.00
131_F	234_L	2.500	1.00
108_P	124_D	2.449	1.00
146_W	223_A	2.449	1.00
151_A	205_V	2.398	1.00
224_A	228_A	2.291	1.00
166_T	213_D	2.277	1.00
154_A	215_I	2.244	1.00
18_Y	282_L	2.221	1.00
124_D	127_R	2.199	1.00
180_D	183_D	2.174	1.00
71_D	94_H	2.108	1.00
150_E	153_R	2.080	1.00
8_G	33_A	2.036	1.00
80_A	84_R	2.028	1.00
28_G	50_A	1.996	1.00
77_N	81_E	1.990	1.00
146_W	150_E	1.984	1.00
15_A	50_A	1.948	1.00
147_I	219_I	1.937	1.00
147_I	249_M	1.913	1.00
120_I	230_Y	1.906	1.00
275_H	279_Q	1.905	1.00
112_V	120_I	1.901	1.00
225_F	262_Y	1.896	1.00
171_K	207_E	1.896	1.00
26_G	54_A	1.893	1.00
114_A	227_L	1.884	1.00
16_I	27_K	1.870	1.00
122_G	238_I	1.825	1.00
144_A	249_M	1.806	1.00
6_V	65_V	1.790	1.00
147_I	223_A	1.784	1.00
138_I	156_G	1.781	1.00
96_G	119_V	1.763	1.00
119_V	130_R	1.762	1.00
155_F	169_A	1.753	1.00
50_A	54_A	1.733	1.00
151_A	172_I	1.709	1.00
62_V	89_N	1.705	1.00
206_D	220_L	1.670	1.00
28_G	54_A	1.670	1.00
228_A	263_L	1.667	1.00
221_K	258_F	1.643	1.00
8_G	67_L	1.624	1.00
167_I	213_D	1.621	1.00
188_A	198_I	1.590	1.00
34_N	68_A	1.581	1.00
170_D	174_K	1.577	1.00
221_K	262_Y	1.570	1.00
179_N	183_D	1.562	1.00
158_M	169_A	1.559	1.00
175_N	207_E	1.542	1.00
249_M	255_Y	1.541	1.00
262_Y	265_N	1.536	1.00
144_A	206_D	1.528	1.00
49_R	53_L	1.528	1.00
152_L	156_G	1.516	1.00
48_N	52_L	1.514	1.00
112_V	227_L	1.509	1.00
226_E	229_S	1.505	1.00
70_V	92_V	1.502	1.00
3_L	20_C	1.501	1.00
136_W	195_V	1.466	1.00
64_Y	93_D	1.458	1.00
158_M	166_T	1.454	1.00
5_G	281_A	1.449	1.00
147_I	205_V	1.415	1.00
31_G	46_N	1.394	1.00
163_I	215_I	1.367	1.00
108_P	125_G	1.361	1.00
218_D	222_N	1.361	1.00
103_E	244_F	1.357	1.00
159_L	181_V	1.355	1.00
112_V	231_A	1.355	1.00
141_E	153_R	1.347	1.00
99_A	111_I	1.337	1.00
217_L	221_K	1.331	1.00
44_V	48_N	1.315	1.00
30_A	50_A	1.302	1.00
12_K	277_P	1.301	1.00
42_E	45_K	1.300	1.00
245_L	259_F	1.298	1.00
45_K	49_R	1.295	1.00
14_S	29_L	1.283	1.00
203_K	207_E	1.264	0.99
16_I	278_E	1.263	0.99
154_A	219_I	1.260	0.99
120_I	234_L	1.253	0.99
39_G	42_E	1.243	0.99
40_V	78_I	1.241	0.99
224_A	258_F	1.221	0.99
110_V	243_I	1.211	0.99
4_V	51_I	1.211	0.99
15_A	28_G	1.211	0.99
17_A	58_M	1.204	0.99
24_F	27_K	1.203	0.99
31_G	50_A	1.196	0.99
5_G	278_E	1.191	0.99
116_T	199_A	1.183	0.99
76_Y	80_A	1.181	0.99
53_L	57_G	1.179	0.99
93_D	97_F	1.179	0.99
176_L	201_L	1.177	0.99
35_F	75_D	1.168	0.99
281_A	285_A	1.159	0.99
46_N	49_R	1.152	0.99
113_I	119_V	1.146	0.99
162_R	233_Q	1.137	0.99
4_V	17_A	1.134	0.99
154_A	163_I	1.133	0.99
18_Y	24_F	1.133	0.99
44_V	85_S	1.128	0.99
136_W	145_Y	1.128	0.99
229_S	266_N	1.120	0.99
114_A	142_G	1.118	0.99
171_K	204_I	1.117	0.99
132_G	230_Y	1.115	0.99
208_A	216_A	1.114	0.99
112_V	230_Y	1.114	0.99
11_S	116_T	1.111	0.99
104_T	244_F	1.110	0.99
232_V	266_N	1.105	0.99
221_K	261_N	1.097	0.98
209_A	212_G	1.096	0.98
250_F	259_F	1.090	0.98
145_Y	198_I	1.085	0.98
149_R	153_R	1.082	0.98
228_A	262_Y	1.081	0.98
167_I	208_A	1.081	0.98
99_A	113_I	1.075	0.98
10_G	34_N	1.070	0.98
155_F	173_M	1.054	0.98
101_Y	287_K	1.052	0.98
12_K	29_L	1.050	0.98
223_A	226_E	1.050	0.98
31_G	34_N	1.046	0.98
202_A	205_V	1.046	0.98
257_N	261_N	1.043	0.98
155_F	166_T	1.039	0.98
83_L	87_A	1.038	0.98
134_L	160_D	1.036	0.98
8_G	13_T	1.033	0.98
205_V	216_A	1.033	0.98
102_A	273_A	1.031	0.98
46_N	50_A	1.027	0.98
208_A	212_G	1.017	0.97
175_N	200_S	1.015	0.97
10_G	68_A	1.008	0.97
209_A	220_L	1.007	0.97
5_G	282_L	1.007	0.97
172_I	201_L	1.005	0.97
248_G	251_N	1.003	0.97
11_S	196_K	0.997	0.97
108_P	126_N	0.996	0.97
260_R	270_G	0.987	0.97
120_I	131_F	0.977	0.97
66_G	133_G	0.973	0.97
73_R	77_N	0.971	0.97
42_E	46_N	0.964	0.97
146_W	226_E	0.964	0.97
33_A	43_A	0.958	0.96
40_V	81_E	0.954	0.96
36_H	75_D	0.952	0.96
153_R	157_K	0.950	0.96
110_V	231_A	0.950	0.96
258_F	262_Y	0.944	0.96
77_N	80_A	0.941	0.96
197_D	200_S	0.927	0.96
101_Y	284_L	0.921	0.96
191_E	197_D	0.916	0.95
222_N	225_F	0.911	0.95
26_G	57_G	0.901	0.95
104_T	109_G	0.898	0.95
74_Y	78_I	0.897	0.95
13_T	33_A	0.893	0.95
175_N	204_I	0.893	0.95
99_A	246_K	0.882	0.94
224_A	255_Y	0.882	0.94
232_V	262_Y	0.871	0.94
120_I	139_A	0.869	0.94
154_A	218_D	0.869	0.94
17_A	54_A	0.866	0.94
38_V	43_A	0.866	0.94
19_T	22_G	0.865	0.94
195_V	198_I	0.865	0.94
152_L	198_I	0.859	0.93
145_Y	199_A	0.857	0.93
156_G	160_D	0.857	0.93
98_V	102_A	0.855	0.93
63_A	87_A	0.855	0.93
145_Y	195_V	0.851	0.93
224_A	259_F	0.848	0.93
10_G	15_A	0.843	0.93
100_L	106_G	0.842	0.93
276_E	279_Q	0.841	0.93
161_G	233_Q	0.840	0.93
165_K	169_A	0.834	0.92
53_L	56_K	0.834	0.92
94_H	119_V	0.831	0.92
122_G	234_L	0.831	0.92
207_E	210_N	0.829	0.92
144_A	199_A	0.827	0.92
15_A	54_A	0.823	0.92
242_K	269_K	0.821	0.92
44_V	82_A	0.821	0.92
168_I	213_D	0.821	0.92
156_G	159_L	0.817	0.92
112_V	259_F	0.813	0.91
4_V	63_A	0.805	0.91
118_S	141_E	0.805	0.91
123_Y	128_R	0.801	0.91
244_F	271_V	0.799	0.91
10_G	116_T	0.798	0.91
218_D	221_K	0.796	0.91
101_Y	106_G	0.796	0.91
141_E	162_R	0.795	0.91
118_S	143_S	0.793	0.90
82_A	85_S	0.790	0.90
45_K	218_D	0.787	0.90
134_L	156_G	0.781	0.90
163_I	166_T	0.780	0.90
243_I	268_I	0.778	0.90
217_L	261_N	0.777	0.90
11_S	248_G	0.774	0.89
64_Y	98_V	0.773	0.89
25_L	58_M	0.771	0.89
256_Y	272_I	0.767	0.89
167_I	170_D	0.766	0.89
43_A	47_V	0.765	0.89
187_W	191_E	0.760	0.89
175_N	201_L	0.755	0.88
222_N	226_E	0.755	0.88
261_N	265_N	0.754	0.88
136_W	149_R	0.754	0.88
144_A	148_G	0.753	0.88
15_A	30_A	0.753	0.88
174_K	177_N	0.752	0.88
114_A	250_F	0.751	0.88
3_L	62_V	0.750	0.88
177_N	183_D	0.748	0.88
206_D	249_M	0.748	0.88
48_N	51_I	0.748	0.88
14_S	27_K	0.747	0.88
64_Y	101_Y	0.741	0.87
6_V	15_A	0.740	0.87
155_F	213_D	0.735	0.87
258_F	261_N	0.735	0.87
200_S	203_K	0.733	0.87
17_A	55_T	0.732	0.87
36_H	185_I	0.729	0.86
231_A	259_F	0.726	0.86
55_T	60_P	0.726	0.86
16_I	279_Q	0.726	0.86
81_E	85_S	0.723	0.86
34_N	37_N	0.723	0.86
194_K	197_D	0.722	0.86
221_K	225_F	0.720	0.86
100_L	123_Y	0.719	0.86
232_V	236_V	0.718	0.86
231_A	235_A	0.717	0.85
164_N	214_W	0.716	0.85
26_G	50_A	0.714	0.85
225_F	266_N	0.708	0.85
114_A	249_M	0.700	0.84
166_T	170_D	0.700	0.84
9_G	116_T	0.699	0.84
151_A	216_A	0.699	0.84
157_K	226_E	0.698	0.84
62_V	91_Y	0.697	0.84
144_A	202_A	0.697	0.84
99_A	109_G	0.693	0.83
52_L	56_K	0.689	0.83
220_L	224_A	0.688	0.83
72_S	75_D	0.688	0.83
155_F	172_I	0.686	0.83
178_I	184_L	0.682	0.83
132_G	141_E	0.681	0.82
260_R	264_D	0.681	0.82
70_V	79_M	0.675	0.82
151_A	208_A	0.672	0.82
114_A	118_S	0.669	0.81
220_L	254_V	0.669	0.81
43_A	46_N	0.661	0.81
173_M	181_V	0.660	0.80
36_H	189_Y	0.659	0.80
114_A	143_S	0.659	0.80
47_V	287_K	0.658	0.80
135_G	139_A	0.658	0.80
184_L	198_I	0.652	0.80
150_E	226_E	0.652	0.80
64_Y	285_A	0.651	0.80
129_V	237_K	0.648	0.79
16_I	24_F	0.641	0.78
30_A	46_N	0.638	0.78
131_F	230_Y	0.638	0.78
45_K	48_N	0.632	0.77
209_A	216_A	0.632	0.77
110_V	122_G	0.632	0.77
215_I	218_D	0.631	0.77
137_L	145_Y	0.629	0.77
85_S	214_W	0.629	0.77
105_R	283_L	0.629	0.77
68_A	100_L	0.628	0.77
25_L	60_P	0.626	0.77
186_K	191_E	0.626	0.77
73_R	76_Y	0.624	0.77
183_D	219_I	0.622	0.76
137_L	149_R	0.622	0.76
138_I	188_A	0.621	0.76
49_R	207_E	0.621	0.76
99_A	273_A	0.621	0.76
61_D	88_K	0.620	0.76
131_F	233_Q	0.620	0.76
74_Y	126_N	0.619	0.76
11_S	199_A	0.617	0.76
54_A	58_M	0.613	0.75
121_V	127_R	0.610	0.75
122_G	237_K	0.609	0.75
12_K	113_I	0.608	0.75
8_G	118_S	0.607	0.75
144_A	220_L	0.604	0.74
223_A	255_Y	0.602	0.74
101_Y	111_I	0.602	0.74
41_E	257_N	0.601	0.74
99_A	277_P	0.600	0.74
28_G	31_G	0.600	0.74
112_V	245_L	0.597	0.73
221_K	224_A	0.596	0.73
45_K	264_D	0.595	0.73
102_A	274_E	0.595	0.73
38_V	42_E	0.590	0.73
118_S	227_L	0.589	0.72
209_A	258_F	0.588	0.72
47_V	50_A	0.588	0.72
34_N	195_V	0.586	0.72
230_Y	234_L	0.585	0.72
14_S	278_E	0.582	0.72
79_M	82_A	0.581	0.71
5_G	66_G	0.580	0.71
64_Y	91_Y	0.577	0.71
209_A	224_A	0.576	0.71
175_N	203_K	0.575	0.71
141_E	149_R	0.573	0.70
157_K	162_R	0.572	0.70
138_I	189_Y	0.571	0.70
250_F	256_Y	0.571	0.70
83_L	110_V	0.571	0.70
131_F	160_D	0.571	0.70
77_N	265_N	0.570	0.70
17_A	60_P	0.569	0.70
172_I	204_I	0.568	0.70
35_F	148_G	0.566	0.69
119_V	246_K	0.564	0.69
15_A	26_G	0.564	0.69
102_A	275_H	0.564	0.69
152_L	157_K	0.563	0.69
196_K	204_I	0.563	0.69
63_A	90_V	0.562	0.69
263_L	266_N	0.562	0.69
233_Q	237_K	0.561	0.69
143_S	146_W	0.558	0.68
168_I	216_A	0.557	0.68
61_D	89_N	0.557	0.68
66_G	93_D	0.557	0.68
111_I	246_K	0.557	0.68
224_A	262_Y	0.555	0.68
67_L	79_M	0.552	0.68
61_D	126_N	0.550	0.67
202_A	249_M	0.547	0.67
87_A	267_N	0.547	0.67
98_V	281_A	0.544	0.66
77_N	84_R	0.541	0.66
222_N	257_N	0.538	0.66
71_D	130_R	0.538	0.66
93_D	98_V	0.536	0.65
14_S	249_M	0.533	0.65
20_C	23_S	0.531	0.65
97_F	123_Y	0.530	0.64
246_K	277_P	0.529	0.64
217_L	258_F	0.527	0.64
165_K	170_D	0.526	0.64
263_L	270_G	0.526	0.64
93_D	284_L	0.523	0.63
228_A	260_R	0.522	0.63
218_D	225_F	0.522	0.63
23_S	269_K	0.521	0.63
221_K	265_N	0.520	0.63
103_E	246_K	0.520	0.63
220_L	258_F	0.514	0.62
12_K	32_P	0.512	0.62
83_L	86_I	0.512	0.62
202_A	223_A	0.512	0.62
81_E	177_N	0.511	0.62
35_F	194_K	0.511	0.62
7_D	12_K	0.510	0.61
49_R	81_E	0.510	0.61
141_E	157_K	0.509	0.61
260_R	265_N	0.509	0.61
103_E	111_I	0.509	0.61
151_A	201_L	0.508	0.61
45_K	86_I	0.508	0.61
224_A	227_L	0.507	0.61
41_E	56_K	0.507	0.61
245_L	250_F	0.507	0.61
212_G	287_K	0.507	0.61
105_R	274_E	0.506	0.61
103_E	273_A	0.506	0.61
136_W	198_I	0.505	0.61
15_A	65_V	0.504	0.61
3_L	19_T	0.504	0.61
44_V	86_I	0.502	0.60
122_G	129_V	0.501	0.60
100_L	104_T	0.501	0.60
282_L	286_F	0.500	0.60

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2e2oA	2	0.9966	100	0.478	Contact Map
2ch5A	2	0.9933	100	0.485	Contact Map
1zc6A	2	0.9295	100	0.512	Contact Map
1zbsA	2	0.9262	100	0.526	Contact Map
1zxoA	4	0.9228	100	0.527	Contact Map
2ap1A	2	0.906	100	0.642	Contact Map
2qm1A	2	0.9295	100	0.652	Contact Map
3r8eA	2	0.8826	99.9	0.655	Contact Map
2yhwA	2	0.896	99.9	0.662	Contact Map
3vglA	3	0.9128	99.9	0.663	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0096 seconds.