Q97U06 - SULSO - GREMLIN Contacts

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Q97U06 - Sugar phosphate nucleotydyl transferase

UniProt:	Q97U06	Sequences: MLEKAVITSAGKGSRMKHITNVLPKALLPLFVTENGGKVTRPVIDLIMDSLNKIGVEKFCIVVGRNGMLLMQYLFDRTPTFVFQDMPKGFGDAVLRAEDFSTNEPFFVHADDGVLTKGYDSLKLLFNEISPDGVLLVRRVENPSRYGVVTVQDKGMYNGHKLYRVIDAEEKPLHPKSNLAIAAVYIFKPSIFSALRQIKVEEGKELELTYGIHNLLLDGKEVYALEMNEDEKWLNVGDPKSYLDALNYSFKFL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	253 (226)
Sequences:	22387 (13933)
Seq/√Len:	926.8

ECOLI - RMLA1 RMLA2 GALF GALU GLMU GLGC
BACSU - RMLA YTDA GTAB YNGB RFBF GLMU GLGC GLGD
HALSA - Q9HQQ4 Q9HSV0 Q9HSZ8 Q9HSZ9 Q9HS61 Q9HSW4
SULSO - Q97U06 Q7LXE7 Q97ZD1 Q97XG0 Q7LXK9 Q97VX4 Q980H9 Q7LXG3 Q980D4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
41_R	49_D	3.887	1.00
98_E	196_R	3.413	1.00
150_T	166_I	2.627	1.00
150_T	167_D	2.604	1.00
131_P	223_Y	2.600	1.00
4_K	58_K	2.588	1.00
45_D	73_Y	2.527	1.00
139_R	178_N	2.526	1.00
88_K	92_D	2.520	1.00
67_G	71_M	2.513	1.00
152_Q	164_R	2.389	1.00
58_K	78_T	2.277	1.00
139_R	226_E	2.265	1.00
58_K	80_T	2.177	1.00
105_P	188_K	2.175	1.00
137_V	224_A	2.160	1.00
194_A	214_N	2.100	1.00
5_A	56_V	2.084	1.00
227_M	231_E	2.060	1.00
213_H	217_L	2.057	1.00
152_Q	166_I	2.037	1.00
131_P	221_E	2.010	1.00
5_A	51_L	1.988	1.00
48_M	59_F	1.913	1.00
126_F	134_V	1.912	1.00
63_V	67_G	1.896	1.00
210_Y	213_H	1.877	1.00
95_L	98_E	1.872	1.00
67_G	83_F	1.855	1.00
82_V	96_R	1.854	1.00
164_R	223_Y	1.844	1.00
68_M	72_Q	1.814	1.00
125_L	225_L	1.796	1.00
105_P	127_N	1.745	1.00
6_V	97_A	1.721	1.00
94_V	108_V	1.708	1.00
179_L	226_E	1.703	1.00
9_S	61_I	1.700	1.00
17_K	21_N	1.694	1.00
129_I	223_Y	1.688	1.00
51_L	109_H	1.680	1.00
150_T	177_S	1.678	1.00
45_D	49_D	1.666	1.00
69_L	72_Q	1.661	1.00
167_D	213_H	1.642	1.00
142_N	145_R	1.607	1.00
214_N	217_L	1.602	1.00
194_A	219_G	1.595	1.00
120_D	124_L	1.577	1.00
171_K	175_P	1.575	1.00
23_L	29_P	1.553	1.00
234_L	244_D	1.547	1.00
132_D	188_K	1.519	1.00
60_C	100_F	1.511	1.00
151_V	179_L	1.506	1.00
71_M	83_F	1.488	1.00
52_N	77_R	1.479	1.00
23_L	69_L	1.470	1.00
42_P	45_D	1.464	1.00
80_T	100_F	1.448	1.00
165_V	224_A	1.440	1.00
154_K	164_R	1.439	1.00
39_V	46_L	1.430	1.00
60_C	82_V	1.408	1.00
118_G	121_S	1.408	1.00
92_D	96_R	1.382	1.00
125_L	129_I	1.356	1.00
121_S	124_L	1.350	1.00
27_L	69_L	1.350	1.00
137_V	149_V	1.336	1.00
59_F	77_R	1.329	1.00
101_S	106_F	1.329	1.00
149_V	165_V	1.323	1.00
242_Y	246_L	1.319	1.00
152_Q	155_G	1.305	1.00
98_E	192_F	1.303	1.00
104_E	189_P	1.299	1.00
211_G	214_N	1.287	1.00
12_K	87_P	1.279	1.00
165_V	222_V	1.260	1.00
41_R	46_L	1.247	1.00
243_L	247_N	1.218	1.00
214_N	219_G	1.209	1.00
194_A	211_G	1.208	1.00
105_P	189_P	1.203	1.00
133_G	187_F	1.193	1.00
238_D	241_S	1.172	1.00
197_Q	214_N	1.172	1.00
190_S	193_S	1.172	1.00
60_C	97_A	1.162	1.00
63_V	83_F	1.161	1.00
121_S	125_L	1.157	1.00
63_V	71_M	1.151	1.00
110_A	183_A	1.146	1.00
151_V	224_A	1.138	1.00
92_D	95_L	1.136	1.00
232_K	248_Y	1.127	1.00
95_L	196_R	1.125	1.00
132_D	221_E	1.122	1.00
106_F	189_P	1.115	1.00
137_V	179_L	1.113	1.00
132_D	220_K	1.102	1.00
164_R	221_E	1.100	1.00
16_M	28_L	1.093	1.00
241_S	244_D	1.091	1.00
150_T	169_E	1.084	1.00
169_E	176_K	1.082	1.00
124_L	128_E	1.078	1.00
105_P	186_I	1.073	1.00
63_V	81_F	1.065	1.00
236_V	245_A	1.057	1.00
116_T	120_D	1.054	1.00
144_S	171_K	1.049	1.00
107_F	186_I	1.032	1.00
4_K	104_E	1.031	1.00
194_A	197_Q	1.031	1.00
68_M	71_M	1.028	1.00
56_V	107_F	1.021	1.00
27_L	73_Y	1.015	1.00
122_L	136_L	1.008	1.00
60_C	80_T	1.004	1.00
187_F	212_I	1.001	1.00
76_D	79_P	0.989	1.00
44_I	61_I	0.983	1.00
95_L	195_L	0.980	1.00
43_V	236_V	0.977	1.00
122_L	186_I	0.976	1.00
71_M	81_F	0.971	1.00
108_V	187_F	0.969	1.00
193_S	196_R	0.961	1.00
66_N	69_L	0.955	1.00
44_I	74_L	0.952	1.00
29_P	40_T	0.939	1.00
181_I	185_Y	0.935	1.00
17_K	20_T	0.932	1.00
210_Y	214_N	0.928	1.00
147_G	170_E	0.926	1.00
189_P	192_F	0.923	1.00
44_I	70_L	0.921	1.00
234_L	248_Y	0.918	1.00
41_R	45_D	0.910	1.00
10_A	62_V	0.906	1.00
63_V	70_L	0.903	1.00
7_I	111_D	0.901	1.00
49_D	75_F	0.896	1.00
244_D	247_N	0.894	1.00
145_R	241_S	0.891	1.00
4_K	60_C	0.891	1.00
107_F	123_K	0.879	1.00
243_L	246_L	0.877	1.00
29_P	42_P	0.875	1.00
54_I	120_D	0.872	1.00
16_M	20_T	0.872	1.00
124_L	127_N	0.871	1.00
205_E	209_T	0.866	1.00
53_K	116_T	0.864	1.00
49_D	52_N	0.853	1.00
77_R	81_F	0.853	1.00
190_S	194_A	0.850	1.00
4_K	102_T	0.841	1.00
6_V	106_F	0.837	1.00
240_K	244_D	0.829	1.00
175_P	178_N	0.825	1.00
52_N	59_F	0.824	1.00
244_D	248_Y	0.822	1.00
223_Y	226_E	0.813	1.00
193_S	197_Q	0.811	1.00
148_V	180_A	0.808	1.00
212_I	215_L	0.806	1.00
234_L	245_A	0.802	1.00
201_E	204_K	0.802	1.00
48_M	79_P	0.799	1.00
145_R	171_K	0.796	1.00
82_V	100_F	0.795	1.00
42_P	73_Y	0.792	1.00
52_N	57_E	0.787	1.00
166_I	169_E	0.785	1.00
48_M	74_L	0.782	1.00
215_L	220_K	0.780	1.00
94_V	191_I	0.777	1.00
70_L	73_Y	0.775	1.00
155_G	166_I	0.769	1.00
125_L	223_Y	0.765	1.00
133_G	222_V	0.765	1.00
26_A	111_D	0.764	1.00
8_T	110_A	0.757	1.00
61_I	79_P	0.754	1.00
123_K	127_N	0.750	1.00
113_G	233_W	0.747	1.00
28_L	242_Y	0.740	1.00
212_I	216_L	0.740	1.00
43_V	47_I	0.738	1.00
82_V	97_A	0.737	1.00
67_G	70_L	0.734	1.00
212_I	222_V	0.733	1.00
126_F	188_K	0.731	1.00
144_S	173_L	0.727	1.00
90_F	110_A	0.726	1.00
52_N	76_D	0.720	1.00
50_S	54_I	0.711	1.00
134_V	223_Y	0.710	1.00
167_D	174_H	0.707	1.00
132_D	190_S	0.707	1.00
20_T	28_L	0.700	1.00
98_E	193_S	0.698	1.00
42_P	46_L	0.698	1.00
56_V	123_K	0.697	1.00
130_S	188_K	0.697	1.00
209_T	213_H	0.692	1.00
102_T	189_P	0.689	1.00
57_E	78_T	0.689	1.00
109_H	119_Y	0.685	1.00
194_A	215_L	0.683	1.00
39_V	246_L	0.681	1.00
126_F	186_I	0.678	1.00
191_I	195_L	0.671	1.00
190_S	220_K	0.671	1.00
6_V	62_V	0.669	1.00
24_P	69_L	0.666	1.00
114_V	245_A	0.666	1.00
168_A	181_I	0.662	1.00
122_L	225_L	0.661	1.00
89_G	207_E	0.661	1.00
52_N	78_T	0.657	1.00
155_G	164_R	0.656	1.00
117_K	120_D	0.656	1.00
13_G	25_K	0.653	1.00
139_R	179_L	0.652	1.00
131_P	164_R	0.652	1.00
133_G	215_L	0.652	1.00
213_H	216_L	0.651	1.00
61_I	74_L	0.651	1.00
6_V	60_C	0.650	1.00
199_K	210_Y	0.650	1.00
46_L	49_D	0.649	1.00
121_S	225_L	0.646	1.00
77_R	80_T	0.646	1.00
7_I	109_H	0.644	1.00
190_S	221_E	0.643	1.00
150_T	176_K	0.639	1.00
179_L	224_A	0.639	1.00
64_G	87_P	0.636	1.00
137_V	140_V	0.635	1.00
198_I	214_N	0.635	1.00
53_K	120_D	0.635	1.00
19_I	23_L	0.634	1.00
100_F	103_N	0.633	1.00
69_L	73_Y	0.631	1.00
134_V	138_R	0.623	1.00
45_D	74_L	0.623	1.00
153_D	164_R	0.623	1.00
145_R	238_D	0.620	1.00
87_P	92_D	0.619	1.00
62_V	93_A	0.619	1.00
80_T	83_F	0.617	1.00
125_L	128_E	0.615	1.00
239_P	243_L	0.615	1.00
4_K	101_S	0.615	1.00
137_V	226_E	0.610	1.00
135_L	149_V	0.610	1.00
62_V	97_A	0.610	1.00
19_I	239_P	0.609	1.00
165_V	168_A	0.607	1.00
8_T	90_F	0.602	1.00
48_M	61_I	0.601	1.00
190_S	219_G	0.599	1.00
5_A	59_F	0.598	1.00
198_I	206_L	0.598	1.00
95_L	206_L	0.595	1.00
4_K	106_F	0.592	1.00
101_S	192_F	0.590	1.00
123_K	186_I	0.588	1.00
122_L	134_V	0.584	1.00
202_E	206_L	0.581	1.00
50_S	116_T	0.578	1.00
138_R	180_A	0.575	1.00
155_G	223_Y	0.574	1.00
74_L	79_P	0.573	1.00
50_S	184_V	0.571	1.00
115_L	182_A	0.571	1.00
143_P	146_Y	0.568	1.00
9_S	44_I	0.567	1.00
129_I	132_D	0.566	1.00
149_V	224_A	0.565	1.00
86_M	92_D	0.563	1.00
202_E	205_E	0.559	1.00
120_D	123_K	0.556	1.00
62_V	82_V	0.554	1.00
168_A	209_T	0.552	1.00
235_N	241_S	0.550	1.00
203_G	207_E	0.549	1.00
84_Q	93_A	0.549	1.00
50_S	53_K	0.547	1.00
109_H	184_V	0.545	1.00
99_D	102_T	0.544	1.00
135_L	140_V	0.543	1.00
49_D	53_K	0.543	1.00
75_F	79_P	0.543	1.00
151_V	154_K	0.542	1.00
19_I	28_L	0.541	1.00
140_V	143_P	0.541	1.00
15_R	25_K	0.540	1.00
89_G	210_Y	0.540	1.00
51_L	107_F	0.539	1.00
110_A	113_G	0.538	1.00
174_H	177_S	0.536	1.00
143_P	148_V	0.535	1.00
103_N	192_F	0.534	1.00
187_F	191_I	0.532	1.00
67_G	74_L	0.531	1.00
30_L	246_L	0.529	1.00
208_L	212_I	0.527	1.00
216_L	219_G	0.526	1.00
133_G	212_I	0.526	1.00
142_N	146_Y	0.525	1.00
63_V	68_M	0.525	1.00
48_M	77_R	0.521	1.00
228_N	231_E	0.521	1.00
47_I	50_S	0.521	1.00
137_V	165_V	0.519	1.00
155_G	226_E	0.519	1.00
195_L	198_I	0.518	1.00
98_E	106_F	0.518	1.00
196_R	200_V	0.517	1.00
199_K	206_L	0.515	1.00
67_G	73_Y	0.515	1.00
198_I	211_G	0.515	1.00
212_I	217_L	0.513	1.00
7_I	47_I	0.512	1.00
194_A	220_K	0.511	1.00
200_V	206_L	0.510	1.00
28_L	246_L	0.509	1.00
187_F	208_L	0.508	1.00
133_G	137_V	0.507	1.00
76_D	81_F	0.506	1.00
90_F	181_I	0.505	1.00
61_I	81_F	0.505	1.00
45_D	75_F	0.504	1.00
12_K	21_N	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1lvwA	3	0.9328	100	0.283	Contact Map
3jukA	3	0.9289	100	0.287	Contact Map
1iimA	3	0.9328	100	0.289	Contact Map
1mc3A	3	0.9289	100	0.293	Contact Map
4ho4A	3	0.9249	100	0.295	Contact Map
2e3dA	3	0.9209	100	0.297	Contact Map
2ux8A	4	0.9328	100	0.305	Contact Map
2pa4A	3	0.9486	100	0.317	Contact Map
4ecmA	3	0.917	100	0.324	Contact Map
1tzfA	4	0.8577	100	0.331	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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