Q97U04 - SULSO - GREMLIN Contacts

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Q97U04 - Uncharacterized protein

UniProt:	Q97U04	Sequences: MQLKWINFFFYLSLIVLISVYTYETVITFSPINAYIGDEVWYPTAAYNMLKLVFHVTPPPMTNIGYPNEQNIQTYINPEHPPLAKYIMAVFIYFVGYYPIVWRIPSWILGDLMLIVGYFLGKKLVSNGILGNLAGILTALLIALDPNVWSLHGIALLDIYVSFFSFLSLYFLLNDKPLWASIALALAMLSKESAYVLIFPFLYYLGEISNNVKKRAIYGIGIPALIYILFSTPLIAYYGGIKAWLDATIIHRALWDVTNGHITLTATSQISTPWDWFLNIHPFYLGYNLYASTNPYVLILWIITTPLAFIFRDSKLITTTMWAWTMWIGFVIVYILGNHTLFSFYVTDFMPVVDAYVVVSLFKLVQKINILK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	372 (334)
Sequences:	1744 (1291)
Seq/√Len:	70.7

ECOLI - ARNT
SULSO - Q97U04

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
121_G	355_A	4.318	1.00
50_L	89_A	4.070	1.00
109_L	163_F	4.034	1.00
167_L	183_A	3.928	1.00
21_Y	114_L	3.898	1.00
134_A	358_V	3.368	1.00
110_G	152_H	3.361	1.00
22_T	111_D	3.292	1.00
90_V	94_F	3.134	1.00
243_A	247_A	3.118	1.00
26_V	111_D	3.008	1.00
116_V	167_L	2.926	1.00
118_Y	139_A	2.913	1.00
121_G	138_T	2.912	1.00
142_I	148_V	2.864	1.00
122_K	135_G	2.744	1.00
244_W	247_A	2.736	1.00
120_L	173_L	2.726	1.00
112_L	163_F	2.712	1.00
244_W	248_T	2.565	1.00
123_K	174_N	2.517	1.00
171_F	179_W	2.484	1.00
84_A	157_L	2.458	1.00
26_V	104_I	2.420	1.00
109_L	160_Y	2.387	1.00
83_L	186_L	2.337	1.00
120_L	170_Y	2.334	1.00
170_Y	174_N	2.316	1.00
95_V	104_I	2.301	1.00
87_I	164_F	2.143	1.00
83_L	189_L	2.092	1.00
227_Y	231_S	2.075	1.00
46_A	89_A	2.070	1.00
43_P	155_A	2.034	1.00
39_E	103_R	2.018	1.00
23_Y	27_I	2.011	1.00
18_I	115_I	1.987	1.00
137_L	358_V	1.941	1.00
161_V	187_A	1.933	1.00
355_A	358_V	1.911	1.00
45_A	76_I	1.881	1.00
243_A	246_D	1.880	1.00
45_A	77_N	1.860	1.00
91_F	101_V	1.857	1.00
307_L	310_I	1.849	1.00
121_G	135_G	1.832	1.00
232_T	236_A	1.820	1.00
29_F	107_W	1.796	1.00
164_F	190_S	1.791	1.00
22_T	26_V	1.790	1.00
113_M	166_F	1.748	1.00
83_L	190_S	1.703	1.00
138_T	358_V	1.701	1.00
106_S	160_Y	1.698	1.00
13_S	136_I	1.685	1.00
293_T	298_L	1.680	1.00
354_D	358_V	1.672	1.00
202_L	205_L	1.670	1.00
14_L	118_Y	1.669	1.00
113_M	148_V	1.665	1.00
253_A	257_V	1.653	0.99
189_L	230_F	1.651	0.99
242_K	246_D	1.624	0.99
168_S	184_L	1.613	0.99
231_S	234_L	1.607	0.99
297_V	301_W	1.598	0.99
28_T	31_P	1.590	0.99
50_L	93_Y	1.587	0.99
42_Y	157_L	1.584	0.99
223_P	231_S	1.575	0.99
231_S	235_I	1.554	0.99
120_L	166_F	1.554	0.99
223_P	227_Y	1.545	0.99
42_Y	345_Y	1.517	0.99
301_W	304_T	1.498	0.99
242_K	245_L	1.463	0.99
95_V	101_V	1.451	0.99
207_E	211_N	1.446	0.99
246_D	250_I	1.414	0.98
125_V	359_V	1.414	0.98
140_L	144_L	1.404	0.98
124_L	173_L	1.393	0.98
108_I	112_L	1.388	0.98
80_H	85_K	1.384	0.98
165_S	348_D	1.377	0.98
152_H	159_I	1.356	0.98
12_L	16_V	1.352	0.98
296_Y	300_L	1.336	0.98
181_S	202_L	1.326	0.98
199_F	202_L	1.323	0.97
117_G	142_I	1.319	0.97
255_W	259_N	1.318	0.97
163_F	183_A	1.314	0.97
141_L	357_V	1.303	0.97
254_L	258_T	1.294	0.97
186_L	190_S	1.292	0.97
243_A	248_T	1.291	0.97
197_L	329_G	1.284	0.97
37_G	267_T	1.278	0.97
135_G	139_A	1.275	0.97
256_D	259_N	1.272	0.97
235_I	239_G	1.269	0.97
116_V	120_L	1.260	0.97
118_Y	135_G	1.253	0.97
298_L	303_I	1.252	0.97
242_K	247_A	1.243	0.96
297_V	303_I	1.241	0.96
88_M	155_A	1.238	0.96
116_V	170_Y	1.235	0.96
26_V	107_W	1.231	0.96
181_S	223_P	1.195	0.95
254_L	257_V	1.194	0.95
83_L	164_F	1.187	0.95
69_E	72_I	1.185	0.95
171_F	183_A	1.181	0.95
269_Q	284_Y	1.177	0.95
230_F	234_L	1.173	0.95
44_T	47_Y	1.172	0.95
90_V	93_Y	1.166	0.95
303_I	310_I	1.153	0.94
290_Y	293_T	1.152	0.94
327_W	352_V	1.151	0.94
294_N	297_V	1.146	0.94
219_G	230_F	1.145	0.94
100_I	104_I	1.138	0.94
219_G	223_P	1.129	0.94
340_T	345_Y	1.102	0.93
137_L	141_L	1.101	0.93
42_Y	77_N	1.100	0.93
113_M	162_S	1.099	0.93
122_K	128_G	1.093	0.93
47_Y	51_K	1.092	0.93
17_L	21_Y	1.085	0.92
43_P	97_Y	1.079	0.92
44_T	48_N	1.078	0.92
237_Y	240_G	1.075	0.92
245_L	248_T	1.075	0.92
113_M	163_F	1.059	0.91
227_Y	235_I	1.044	0.91
224_A	228_I	1.044	0.91
246_D	251_H	1.042	0.91
182_I	186_L	1.042	0.91
279_N	343_S	1.042	0.91
301_W	306_P	1.035	0.91
227_Y	230_F	1.032	0.90
346_V	349_F	1.032	0.90
293_T	299_I	1.032	0.90
323_A	356_Y	1.028	0.90
331_V	335_I	1.022	0.90
95_V	100_I	1.013	0.90
342_F	346_V	1.011	0.89
340_T	344_F	1.008	0.89
292_S	299_I	1.007	0.89
235_I	240_G	1.002	0.89
49_M	52_L	1.001	0.89
329_G	349_F	0.999	0.89
41_W	44_T	0.996	0.89
306_P	309_F	0.994	0.89
92_I	102_W	0.993	0.89
307_L	363_K	0.990	0.88
227_Y	234_L	0.989	0.88
242_K	248_T	0.986	0.88
223_P	235_I	0.984	0.88
87_I	160_Y	0.984	0.88
272_T	277_F	0.984	0.88
141_L	354_D	0.973	0.88
306_P	310_I	0.971	0.88
271_S	274_W	0.966	0.87
300_L	304_T	0.945	0.86
192_E	227_Y	0.945	0.86
161_V	190_S	0.945	0.86
11_Y	15_I	0.944	0.86
189_L	194_A	0.944	0.86
54_F	86_Y	0.941	0.86
300_L	357_V	0.940	0.86
228_I	231_S	0.939	0.86
296_Y	303_I	0.938	0.86
10_F	14_L	0.933	0.85
84_A	190_S	0.932	0.85
234_L	238_Y	0.931	0.85
161_V	194_A	0.925	0.85
126_S	133_L	0.917	0.84
18_I	23_Y	0.913	0.84
42_Y	79_E	0.911	0.84
172_L	177_P	0.901	0.83
49_M	86_Y	0.894	0.83
220_I	223_P	0.894	0.83
128_G	133_L	0.893	0.83
95_V	98_Y	0.891	0.83
311_F	314_S	0.891	0.83
206_G	210_N	0.889	0.82
215_R	219_G	0.888	0.82
169_L	321_M	0.886	0.82
231_S	238_Y	0.883	0.82
114_L	139_A	0.878	0.82
15_I	19_S	0.875	0.81
14_L	136_I	0.875	0.81
362_F	366_Q	0.874	0.81
255_W	258_T	0.873	0.81
341_L	348_D	0.869	0.81
310_I	313_D	0.869	0.81
235_I	238_Y	0.867	0.81
250_I	253_A	0.867	0.81
38_D	80_H	0.865	0.81
77_N	85_K	0.863	0.81
233_P	237_Y	0.863	0.81
15_I	115_I	0.863	0.81
118_Y	122_K	0.862	0.80
101_V	105_P	0.855	0.80
79_E	85_K	0.853	0.80
80_H	193_S	0.853	0.80
80_H	192_E	0.852	0.80
36_I	154_I	0.852	0.80
331_V	334_Y	0.851	0.80
164_F	183_A	0.846	0.79
17_L	143_A	0.844	0.79
21_Y	25_T	0.842	0.79
96_G	101_V	0.841	0.79
98_Y	101_V	0.841	0.79
165_S	187_A	0.838	0.79
216_A	219_G	0.835	0.78
172_L	184_L	0.833	0.78
315_K	319_T	0.833	0.78
209_S	212_V	0.832	0.78
230_F	233_P	0.832	0.78
134_A	362_F	0.829	0.78
91_F	105_P	0.828	0.78
231_S	240_G	0.826	0.78
79_E	157_L	0.826	0.78
216_A	220_I	0.826	0.78
125_V	355_A	0.824	0.77
245_L	250_I	0.824	0.77
164_F	213_K	0.821	0.77
275_D	280_I	0.819	0.77
298_L	301_W	0.819	0.77
187_A	194_A	0.817	0.77
300_L	303_I	0.816	0.77
20_V	140_L	0.814	0.77
17_L	23_Y	0.813	0.76
37_G	40_V	0.812	0.76
19_S	22_T	0.809	0.76
252_R	256_D	0.808	0.76
168_S	218_Y	0.803	0.76
114_L	171_F	0.801	0.75
40_V	44_T	0.800	0.75
42_Y	156_L	0.795	0.75
229_L	233_P	0.792	0.75
301_W	310_I	0.790	0.74
127_N	135_G	0.788	0.74
233_P	236_A	0.787	0.74
252_R	255_W	0.787	0.74
89_A	93_Y	0.786	0.74
37_G	41_W	0.786	0.74
194_A	200_P	0.785	0.74
78_P	86_Y	0.784	0.74
97_Y	100_I	0.775	0.73
250_I	254_L	0.774	0.73
44_T	77_N	0.773	0.73
41_W	45_A	0.773	0.73
10_F	118_Y	0.771	0.73
115_I	135_G	0.770	0.72
323_A	355_A	0.767	0.72
209_S	213_K	0.766	0.72
85_K	193_S	0.766	0.72
92_I	97_Y	0.762	0.72
83_L	160_Y	0.759	0.71
69_E	73_Q	0.757	0.71
206_G	321_M	0.757	0.71
333_V	345_Y	0.756	0.71
87_I	109_L	0.755	0.71
322_W	326_M	0.753	0.71
290_Y	294_N	0.751	0.71
344_F	350_M	0.750	0.70
42_Y	255_W	0.750	0.70
11_Y	14_L	0.749	0.70
88_M	157_L	0.749	0.70
146_P	192_E	0.748	0.70
115_I	224_A	0.747	0.70
46_A	88_M	0.745	0.70
80_H	145_D	0.744	0.70
273_P	276_W	0.732	0.69
327_W	331_V	0.732	0.69
313_D	316_L	0.731	0.68
41_W	77_N	0.730	0.68
327_W	346_V	0.729	0.68
121_G	125_V	0.726	0.68
72_I	77_N	0.726	0.68
38_D	42_Y	0.724	0.68
291_A	297_V	0.723	0.68
271_S	275_D	0.720	0.67
187_A	195_Y	0.720	0.67
40_V	342_F	0.719	0.67
167_L	182_I	0.717	0.67
86_Y	345_Y	0.716	0.67
41_W	48_N	0.715	0.67
283_F	343_S	0.713	0.67
41_W	344_F	0.713	0.67
290_Y	301_W	0.709	0.66
199_F	203_Y	0.708	0.66
48_N	72_I	0.704	0.66
311_F	319_T	0.704	0.66
230_F	235_I	0.703	0.65
214_K	218_Y	0.702	0.65
78_P	85_K	0.701	0.65
119_F	170_Y	0.700	0.65
206_G	211_N	0.694	0.64
105_P	109_L	0.694	0.64
141_L	144_L	0.692	0.64
216_A	221_G	0.688	0.64
163_F	167_L	0.687	0.64
171_F	180_A	0.687	0.64
189_L	192_E	0.680	0.63
208_I	211_N	0.677	0.63
165_S	194_A	0.675	0.62
266_A	270_I	0.673	0.62
216_A	223_P	0.669	0.62
308_A	356_Y	0.663	0.61
37_G	269_Q	0.661	0.61
80_H	157_L	0.659	0.60
186_L	189_L	0.659	0.60
85_K	157_L	0.655	0.60
215_R	220_I	0.654	0.60
245_L	258_T	0.654	0.60
330_F	333_V	0.654	0.60
42_Y	45_A	0.654	0.60
160_Y	164_F	0.653	0.60
18_I	111_D	0.653	0.60
219_G	233_P	0.653	0.60
220_I	231_S	0.652	0.60
23_Y	303_I	0.652	0.60
30_S	100_I	0.651	0.60
259_N	264_L	0.650	0.59
298_L	302_I	0.650	0.59
327_W	333_V	0.648	0.59
37_G	342_F	0.647	0.59
158_D	345_Y	0.646	0.59
106_S	155_A	0.642	0.58
300_L	306_P	0.640	0.58
297_V	300_L	0.636	0.58
17_L	226_I	0.636	0.58
172_L	201_F	0.635	0.58
279_N	282_P	0.635	0.58
112_L	212_V	0.633	0.57
161_V	193_S	0.633	0.57
84_A	88_M	0.633	0.57
251_H	254_L	0.632	0.57
20_V	28_T	0.631	0.57
304_T	357_V	0.630	0.57
256_D	271_S	0.630	0.57
276_W	294_N	0.629	0.57
303_I	306_P	0.628	0.57
80_H	342_F	0.628	0.57
36_I	340_T	0.627	0.57
160_Y	190_S	0.625	0.56
334_Y	337_G	0.625	0.56
207_E	210_N	0.619	0.56
295_P	298_L	0.618	0.56
151_L	154_I	0.617	0.56
289_L	293_T	0.617	0.56
14_L	18_I	0.617	0.56
277_F	280_I	0.616	0.55
328_I	332_I	0.615	0.55
18_I	22_T	0.615	0.55
226_I	230_F	0.615	0.55
227_Y	233_P	0.614	0.55
279_N	283_F	0.613	0.55
326_M	349_F	0.612	0.55
15_I	221_G	0.612	0.55
147_N	291_A	0.607	0.54
304_T	307_L	0.606	0.54
310_I	314_S	0.606	0.54
218_Y	223_P	0.605	0.54
80_H	345_Y	0.603	0.54
29_F	173_L	0.603	0.54
185_A	189_L	0.602	0.54
42_Y	78_P	0.602	0.54
41_W	157_L	0.601	0.54
87_I	105_P	0.601	0.54
269_Q	273_P	0.600	0.53
272_T	278_L	0.599	0.53
217_I	222_I	0.599	0.53
106_S	109_L	0.599	0.53
117_G	140_L	0.598	0.53
156_L	344_F	0.596	0.53
299_I	304_T	0.595	0.53
346_V	350_M	0.594	0.53
20_V	144_L	0.592	0.52
148_V	347_T	0.592	0.52
147_N	346_V	0.591	0.52
288_N	291_A	0.590	0.52
326_M	334_Y	0.590	0.52
234_L	239_G	0.589	0.52
80_H	86_Y	0.588	0.52
193_S	344_F	0.588	0.52
107_W	111_D	0.586	0.52
168_S	180_A	0.586	0.52
37_G	344_F	0.585	0.52
188_M	194_A	0.584	0.52
116_V	163_F	0.583	0.51
196_V	256_D	0.581	0.51
15_I	208_I	0.581	0.51
188_M	198_I	0.579	0.51
148_V	152_H	0.579	0.51
216_A	227_Y	0.579	0.51
37_G	80_H	0.578	0.51
36_I	156_L	0.575	0.50
20_V	226_I	0.574	0.50
234_L	240_G	0.573	0.50
19_S	264_L	0.573	0.50
252_R	257_V	0.572	0.50
284_Y	288_N	0.571	0.50
135_G	275_D	0.570	0.50
42_Y	85_K	0.568	0.50
83_L	289_L	0.567	0.49
267_T	342_F	0.567	0.49
235_I	241_I	0.566	0.49
232_T	235_I	0.566	0.49
77_N	252_R	0.566	0.49
70_Q	74_T	0.563	0.49
157_L	345_Y	0.563	0.49
317_I	320_T	0.563	0.49
117_G	138_T	0.562	0.49
10_F	119_F	0.561	0.49
272_T	275_D	0.560	0.49
20_V	225_L	0.559	0.48
88_M	91_F	0.558	0.48
311_F	315_K	0.556	0.48
25_T	152_H	0.555	0.48
298_L	304_T	0.555	0.48
41_W	75_Y	0.554	0.48
164_F	230_F	0.553	0.48
324_W	335_I	0.553	0.48
32_I	181_S	0.552	0.48
315_K	318_T	0.551	0.47
245_L	365_V	0.550	0.47
217_I	224_A	0.549	0.47
288_N	293_T	0.549	0.47
138_T	351_P	0.549	0.47
271_S	276_W	0.548	0.47
161_V	165_S	0.547	0.47
297_V	304_T	0.545	0.47
357_V	360_S	0.545	0.47
12_L	224_A	0.543	0.47
105_P	252_R	0.542	0.46
362_F	365_V	0.541	0.46
102_W	344_F	0.541	0.46
140_L	319_T	0.540	0.46
148_V	159_I	0.540	0.46
124_L	325_T	0.540	0.46
30_S	107_W	0.538	0.46
77_N	157_L	0.538	0.46
248_T	255_W	0.536	0.46
345_Y	351_P	0.535	0.46
327_W	337_G	0.535	0.46
43_P	193_S	0.534	0.45
286_G	297_V	0.534	0.45
23_Y	363_K	0.530	0.45
170_Y	203_Y	0.528	0.45
322_W	325_T	0.528	0.45
275_D	278_L	0.528	0.45
113_M	289_L	0.528	0.45
316_L	319_T	0.527	0.45
40_V	84_A	0.526	0.44
277_F	349_F	0.525	0.44
41_W	80_H	0.525	0.44
147_N	297_V	0.524	0.44
32_I	106_S	0.523	0.44
223_P	234_L	0.523	0.44
324_W	328_I	0.522	0.44
23_Y	360_S	0.521	0.44
162_S	347_T	0.520	0.44
330_F	349_F	0.520	0.44
177_P	181_S	0.520	0.44
53_V	86_Y	0.518	0.43
231_S	237_Y	0.517	0.43
122_K	150_S	0.516	0.43
299_I	303_I	0.516	0.43
182_I	264_L	0.516	0.43
101_V	104_I	0.515	0.43
22_T	108_I	0.514	0.43
50_L	85_K	0.514	0.43
19_S	313_D	0.512	0.43
164_F	167_L	0.512	0.43
39_E	80_H	0.512	0.43
45_A	48_N	0.511	0.43
183_A	186_L	0.510	0.43
110_G	140_L	0.509	0.42
298_L	305_T	0.508	0.42
37_G	75_Y	0.508	0.42
139_A	328_I	0.508	0.42
305_T	308_A	0.508	0.42
37_G	181_S	0.506	0.42
173_L	321_M	0.505	0.42
237_Y	241_I	0.504	0.42
38_D	157_L	0.502	0.42
83_L	180_A	0.502	0.42
338_N	341_L	0.501	0.41
264_L	267_T	0.501	0.41
42_Y	155_A	0.500	0.41
267_T	270_I	0.500	0.41
104_I	112_L	0.500	0.41

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3wajA	1	0.8306	100	0.65	Contact Map
3rceA	1	0.828	99.8	0.75	Contact Map
2l34A	2	0.0887	5.3	0.97	Contact Map
2looA	1	0.2634	2.8	0.973	Contact Map
2gfpA	2	0.5699	2.3	0.975	Contact Map
2m8fA	1	0.0645	2	0.976	Contact Map
2l35A	2	0.1586	1.6	0.977	Contact Map
1xrdA	1	0.1263	1.6	0.977	Contact Map
2j5lA	1	0	1.6	0.977	Contact Map
2h3oA	1	0.0887	1.3	0.978	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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