Q97TY0 - SULSO - GREMLIN Contacts

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Q97TY0 - Glycosyltransferase, putative

UniProt:	Q97TY0	Sequences: MIVPVKNEERVLPRLLDRLVNLEYDKSKYEIIVVEDGSTDRTFQICKEYEIKYNNLIRCYSLPRANVPNGKSRALNFALRISKGEIIGIFDGDTVPRLDILEYVEPKFEDITVGAVQGKLVPINVRESVTSRLAAIEELIYEYSIAGRAKVGLFVPIEGTCSFIRKSIIMELGGWNEYSLTEDLDISLKIVNKGCKIVYSPTTISWREVPVSLRVLIRQRLRWYRGHLEVQLGKLRKIDLRIIDGILIVLTPFFMVLNLVNYSLVLVYSSSLYIVAASLVSLASLLSLLLIILIARRHMIEYFYMIPSFVYMNFIVALNFTAIFLELIRAPRVWVKTERSAKVTGEVMG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	349 (316)
Sequences:	11563 (8920)
Seq/√Len:	501.8

ECOLI - PGAC YAIP BCSA ARNC GTRB YIBD WBBL WCAA WCAE
BACSU - YDAM CSBB YKCC YKOT GGAA EPSJ TUAG EPSH EPSE CGED
HALSA - Q9HSB1 Q9HQQ6 Q9HQP4 Q9HQP3 Q9HQP8
SULSO - Q97TY0 Q7LXY2 Q97W52 Q97UK7 Q97YM4 Q97WK7 Q97TZ0 Q7LXF7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
9_E	41_R	4.884	1.00
23_E	102_E	4.758	1.00
166_K	170_M	4.472	1.00
43_F	47_K	2.938	1.00
88_G	163_F	2.925	1.00
34_V	78_A	2.915	1.00
35_E	61_S	2.864	1.00
168_I	195_C	2.796	1.00
30_E	84_G	2.795	1.00
41_R	44_Q	2.765	1.00
30_E	58_R	2.714	1.00
103_Y	202_T	2.598	1.00
86_I	108_F	2.563	1.00
86_I	105_E	2.554	1.00
2_I	34_V	2.500	1.00
35_E	38_S	2.397	1.00
86_I	163_F	2.356	1.00
13_P	48_E	2.349	1.00
113_V	198_V	2.328	1.00
107_K	200_S	2.317	1.00
171_E	193_K	2.299	1.00
252_P	255_M	2.235	1.00
114_G	195_C	2.225	1.00
99_D	103_Y	2.188	1.00
212_S	215_V	2.181	1.00
13_P	17_D	2.111	1.00
23_E	99_D	2.100	1.00
104_V	163_F	2.066	1.00
44_Q	48_E	2.026	1.00
108_F	163_F	2.019	1.00
185_D	189_K	1.967	1.00
79_L	87_I	1.938	1.00
167_S	171_E	1.905	1.00
24_Y	105_E	1.891	1.00
13_P	45_I	1.888	1.00
168_I	190_I	1.886	1.00
171_E	195_C	1.872	1.00
5_V	42_T	1.854	1.00
88_G	101_L	1.848	1.00
8_E	92_G	1.837	1.00
112_T	196_K	1.819	1.00
17_D	49_Y	1.814	1.00
245_G	248_I	1.786	1.00
33_V	46_C	1.749	1.00
244_D	247_L	1.746	1.00
291_I	295_A	1.723	1.00
103_Y	106_P	1.714	1.00
82_S	166_K	1.712	1.00
18_R	96_P	1.712	1.00
71_K	75_L	1.679	1.00
114_G	165_R	1.661	1.00
128_S	131_S	1.635	1.00
115_A	197_I	1.608	1.00
244_D	248_I	1.590	1.00
41_R	45_I	1.584	1.00
309_F	313_N	1.563	1.00
77_F	81_I	1.550	1.00
30_E	83_K	1.530	1.00
16_L	49_Y	1.514	1.00
23_E	98_L	1.513	1.00
21_N	98_L	1.509	1.00
256_V	259_L	1.493	1.00
7_N	38_S	1.488	1.00
3_V	19_L	1.461	1.00
43_F	61_S	1.461	1.00
319_N	322_A	1.451	1.00
17_D	52_K	1.450	1.00
7_N	39_T	1.449	1.00
18_R	95_V	1.440	1.00
110_D	196_K	1.431	1.00
35_E	43_F	1.423	1.00
242_I	245_G	1.416	1.00
284_S	288_L	1.408	1.00
45_I	48_E	1.405	1.00
46_C	59_C	1.393	1.00
249_V	253_F	1.382	1.00
25_D	28_K	1.380	1.00
280_V	284_S	1.376	1.00
248_I	251_T	1.374	1.00
34_V	74_A	1.365	1.00
219_Q	223_W	1.352	1.00
284_S	287_S	1.349	1.00
96_P	100_I	1.349	1.00
157_I	162_S	1.342	1.00
314_F	318_L	1.342	1.00
77_F	80_R	1.339	1.00
85_E	167_S	1.328	1.00
308_S	312_M	1.325	1.00
141_Y	145_I	1.322	1.00
242_I	248_I	1.317	1.00
59_C	62_L	1.309	1.00
94_T	205_S	1.304	1.00
87_I	166_K	1.301	1.00
251_T	255_M	1.293	1.00
17_D	21_N	1.286	1.00
243_I	248_I	1.275	1.00
306_I	309_F	1.270	1.00
47_K	61_S	1.264	1.00
245_G	252_P	1.264	1.00
115_A	190_I	1.259	1.00
79_L	169_I	1.253	1.00
309_F	312_M	1.238	1.00
24_Y	29_Y	1.234	1.00
249_V	255_M	1.233	1.00
90_F	96_P	1.232	1.00
32_I	58_R	1.229	1.00
100_I	161_C	1.228	1.00
48_E	52_K	1.220	1.00
62_L	77_F	1.214	1.00
134_A	137_E	1.209	1.00
313_N	317_A	1.195	1.00
207_R	210_P	1.193	1.00
75_L	89_I	1.191	1.00
260_V	263_S	1.191	1.00
29_Y	101_L	1.189	1.00
116_V	200_S	1.185	1.00
24_Y	28_K	1.175	1.00
19_L	31_I	1.170	1.00
30_E	82_S	1.164	1.00
6_K	68_P	1.160	1.00
87_I	169_I	1.159	1.00
244_D	252_P	1.149	1.00
86_I	165_R	1.143	1.00
84_G	166_K	1.134	1.00
296_R	299_M	1.129	1.00
247_L	251_T	1.126	1.00
50_E	53_Y	1.119	1.00
120_L	160_T	1.113	1.00
58_R	61_S	1.113	1.00
263_S	266_L	1.109	1.00
251_T	254_F	1.097	1.00
297_R	301_E	1.088	1.00
47_K	50_E	1.082	1.00
78_A	82_S	1.080	1.00
14_R	17_D	1.077	1.00
250_L	253_F	1.071	1.00
249_V	252_P	1.055	1.00
20_V	53_Y	1.053	1.00
137_E	140_I	1.047	1.00
226_G	229_E	1.047	1.00
220_R	223_W	1.042	1.00
5_V	12_L	1.039	1.00
291_I	294_I	1.034	1.00
47_K	51_I	1.034	1.00
60_Y	77_F	1.029	1.00
200_S	203_T	1.020	1.00
48_E	51_I	1.011	1.00
60_Y	81_I	1.008	1.00
143_Y	147_G	1.003	1.00
59_C	63_P	1.001	1.00
43_F	46_C	0.996	1.00
216_L	219_Q	0.996	1.00
15_L	19_L	0.993	1.00
238_I	241_R	0.993	1.00
141_Y	144_S	0.990	1.00
107_K	198_V	0.985	1.00
305_M	309_F	0.979	1.00
275_V	278_S	0.978	1.00
283_A	287_S	0.976	1.00
2_I	78_A	0.976	1.00
49_Y	53_Y	0.971	1.00
287_S	295_A	0.969	1.00
304_Y	307_P	0.966	1.00
308_S	311_Y	0.961	1.00
46_C	50_E	0.958	1.00
5_V	92_G	0.952	1.00
318_L	321_T	0.952	1.00
225_R	229_E	0.952	1.00
76_N	80_R	0.951	1.00
282_L	285_L	0.950	1.00
12_L	42_T	0.947	1.00
127_E	131_S	0.947	1.00
307_P	312_M	0.944	1.00
282_L	286_L	0.942	1.00
9_E	45_I	0.939	1.00
22_L	101_L	0.936	1.00
181_T	226_G	0.933	1.00
145_I	148_R	0.929	1.00
252_P	256_V	0.927	1.00
71_K	159_G	0.921	1.00
219_Q	222_R	0.920	1.00
273_Y	276_A	0.918	1.00
216_L	220_R	0.907	1.00
242_I	247_L	0.904	1.00
277_A	284_S	0.903	1.00
14_R	95_V	0.895	1.00
141_Y	146_A	0.894	1.00
245_G	249_V	0.891	1.00
242_I	252_P	0.889	1.00
262_Y	266_L	0.888	1.00
99_D	102_E	0.885	1.00
281_S	284_S	0.885	1.00
142_E	145_I	0.885	1.00
134_A	138_E	0.885	1.00
49_Y	52_K	0.885	1.00
315_I	321_T	0.884	1.00
248_I	252_P	0.882	1.00
307_P	311_Y	0.882	1.00
36_D	70_G	0.882	1.00
243_I	247_L	0.882	1.00
315_I	318_L	0.882	1.00
167_S	170_M	0.880	1.00
72_S	182_E	0.878	1.00
16_L	33_V	0.878	1.00
122_P	209_V	0.875	1.00
19_L	96_P	0.874	1.00
318_L	322_A	0.873	1.00
97_R	206_W	0.872	1.00
50_E	57_I	0.871	1.00
75_L	175_W	0.871	1.00
296_R	300_I	0.868	1.00
319_N	323_I	0.866	1.00
131_S	134_A	0.863	1.00
288_L	291_I	0.860	1.00
45_I	49_Y	0.858	1.00
88_G	100_I	0.854	1.00
72_S	76_N	0.853	1.00
256_V	263_S	0.852	1.00
287_S	290_L	0.850	1.00
8_E	11_V	0.846	1.00
287_S	291_I	0.846	1.00
281_S	285_L	0.846	1.00
40_D	44_Q	0.844	1.00
108_F	165_R	0.843	1.00
275_V	286_L	0.838	1.00
165_R	195_C	0.836	1.00
15_L	20_V	0.833	1.00
190_I	195_C	0.832	1.00
69_N	73_R	0.831	1.00
124_N	131_S	0.829	1.00
316_V	319_N	0.829	1.00
97_R	204_I	0.828	1.00
246_I	252_P	0.827	1.00
38_S	42_T	0.827	1.00
244_D	254_F	0.825	1.00
79_L	82_S	0.825	1.00
186_I	190_I	0.824	1.00
297_R	300_I	0.823	1.00
44_Q	47_K	0.821	1.00
310_V	313_N	0.820	1.00
250_L	254_F	0.816	1.00
258_N	262_Y	0.815	1.00
12_L	33_V	0.814	1.00
137_E	220_R	0.813	1.00
296_R	302_Y	0.812	1.00
306_I	311_Y	0.810	1.00
104_V	108_F	0.807	1.00
311_Y	315_I	0.806	1.00
5_V	33_V	0.803	1.00
16_L	20_V	0.801	1.00
313_N	316_V	0.801	1.00
172_L	190_I	0.783	1.00
305_M	308_S	0.782	1.00
304_Y	309_F	0.781	1.00
131_S	135_A	0.779	1.00
236_R	240_L	0.779	1.00
58_R	81_I	0.778	1.00
132_R	135_A	0.777	1.00
242_I	246_I	0.777	1.00
279_L	283_A	0.776	1.00
114_G	190_I	0.775	1.00
288_L	292_I	0.773	1.00
312_M	315_I	0.771	1.00
104_V	203_T	0.770	1.00
248_I	254_F	0.769	1.00
304_Y	312_M	0.768	1.00
130_T	134_A	0.767	1.00
13_P	49_Y	0.766	1.00
117_Q	120_L	0.764	1.00
135_A	138_E	0.762	1.00
32_I	82_S	0.761	1.00
12_L	16_L	0.760	1.00
315_I	322_A	0.752	1.00
142_E	146_A	0.748	1.00
305_M	312_M	0.746	1.00
141_Y	147_G	0.743	1.00
107_K	116_V	0.742	1.00
244_D	251_T	0.741	1.00
161_C	205_S	0.740	1.00
298_H	301_E	0.740	1.00
284_S	291_I	0.739	1.00
304_Y	308_S	0.737	1.00
94_T	207_R	0.737	1.00
285_L	288_L	0.736	1.00
108_F	113_V	0.735	1.00
168_I	171_E	0.735	1.00
265_V	269_S	0.734	1.00
60_Y	63_P	0.733	1.00
144_S	147_G	0.732	1.00
243_I	246_I	0.731	1.00
248_I	255_M	0.730	1.00
258_N	261_N	0.723	1.00
296_R	301_E	0.719	1.00
315_I	319_N	0.716	1.00
104_V	118_G	0.715	1.00
114_G	168_I	0.715	1.00
249_V	254_F	0.714	1.00
259_L	262_Y	0.713	1.00
261_N	265_V	0.712	1.00
118_G	161_C	0.711	1.00
278_S	285_L	0.709	1.00
317_A	321_T	0.709	1.00
176_N	189_K	0.708	1.00
246_I	249_V	0.707	1.00
121_V	204_I	0.700	1.00
244_D	249_V	0.697	1.00
281_S	288_L	0.697	1.00
274_I	285_L	0.696	1.00
277_A	281_S	0.695	1.00
250_L	255_M	0.695	1.00
277_A	288_L	0.691	1.00
32_I	78_A	0.689	1.00
306_I	310_V	0.688	1.00
106_P	109_E	0.686	1.00
312_M	316_V	0.684	1.00
42_T	46_C	0.684	1.00
276_A	284_S	0.681	1.00
13_P	52_K	0.680	1.00
117_Q	157_I	0.679	1.00
244_D	250_L	0.679	1.00
305_M	311_Y	0.675	1.00
301_E	304_Y	0.675	1.00
15_L	18_R	0.675	1.00
316_V	320_F	0.673	1.00
165_R	168_I	0.673	1.00
247_L	254_F	0.671	1.00
292_I	295_A	0.670	1.00
298_H	302_Y	0.670	1.00
288_L	295_A	0.669	1.00
315_I	323_I	0.668	1.00
223_W	226_G	0.667	1.00
117_Q	122_P	0.664	1.00
210_P	219_Q	0.663	1.00
133_L	136_I	0.663	1.00
214_R	218_R	0.662	1.00
43_F	59_C	0.660	1.00
275_V	279_L	0.659	1.00
22_L	96_P	0.656	1.00
226_G	230_V	0.656	1.00
278_S	288_L	0.655	1.00
247_L	253_F	0.654	1.00
182_E	185_D	0.653	1.00
50_E	54_N	0.646	1.00
19_L	22_L	0.644	1.00
237_K	240_L	0.644	1.00
22_L	102_E	0.644	1.00
321_T	324_F	0.643	1.00
234_K	237_K	0.642	1.00
46_C	49_Y	0.641	1.00
277_A	282_L	0.640	1.00
242_I	253_F	0.640	1.00
320_F	324_F	0.638	1.00
308_S	313_N	0.637	1.00
176_N	179_S	0.636	1.00
263_S	269_S	0.635	1.00
12_L	45_I	0.635	1.00
136_I	139_L	0.634	1.00
142_E	147_G	0.634	1.00
244_D	255_M	0.634	1.00
224_Y	227_H	0.631	1.00
95_V	123_I	0.630	1.00
3_V	15_L	0.627	1.00
176_N	185_D	0.626	1.00
164_I	190_I	0.626	1.00
71_K	182_E	0.626	1.00
168_I	172_L	0.626	1.00
7_N	40_D	0.625	1.00
280_V	283_A	0.624	1.00
213_L	216_L	0.624	1.00
276_A	280_V	0.624	1.00
115_A	122_P	0.623	1.00
278_S	282_L	0.621	1.00
201_P	204_I	0.619	1.00
268_Y	271_S	0.616	1.00
28_K	84_G	0.613	1.00
105_E	163_F	0.612	1.00
85_E	165_R	0.612	1.00
119_K	199_Y	0.611	1.00
102_E	106_P	0.611	1.00
246_I	253_F	0.608	0.99
76_N	79_L	0.606	0.99
245_G	255_M	0.605	0.99
283_A	291_I	0.603	0.99
304_Y	313_N	0.602	0.99
128_S	132_R	0.602	0.99
274_I	277_A	0.598	0.99
299_M	302_Y	0.597	0.99
63_P	67_V	0.596	0.99
284_S	292_I	0.594	0.99
285_L	290_L	0.594	0.99
320_F	323_I	0.593	0.99
247_L	252_P	0.592	0.99
243_I	251_T	0.591	0.99
22_L	29_Y	0.589	0.99
287_S	294_I	0.588	0.99
17_D	20_V	0.586	0.99
297_R	302_Y	0.586	0.99
312_M	319_N	0.585	0.99
15_L	90_F	0.584	0.99
149_A	153_L	0.584	0.99
217_I	221_L	0.581	0.99
79_L	89_I	0.580	0.99
115_A	157_I	0.579	0.99
4_P	74_A	0.578	0.99
246_I	251_T	0.578	0.99
274_I	278_S	0.577	0.99
311_Y	322_A	0.577	0.99
82_S	87_I	0.576	0.99
19_L	90_F	0.574	0.99
303_F	307_P	0.574	0.99
20_V	57_I	0.573	0.99
245_G	251_T	0.572	0.99
308_S	315_I	0.571	0.99
266_L	270_S	0.570	0.99
80_R	170_M	0.570	0.99
285_L	289_L	0.568	0.99
31_I	57_I	0.568	0.99
7_N	42_T	0.567	0.99
290_L	294_I	0.564	0.99
281_S	287_S	0.559	0.99
107_K	110_D	0.557	0.99
191_V	197_I	0.557	0.99
304_Y	311_Y	0.556	0.99
187_S	197_I	0.555	0.99
16_L	31_I	0.555	0.99
12_L	46_C	0.554	0.99
307_P	310_V	0.553	0.99
256_V	260_V	0.551	0.99
5_V	8_E	0.549	0.99
60_Y	78_A	0.548	0.99
108_F	116_V	0.547	0.99
133_L	138_E	0.547	0.99
37_G	62_L	0.545	0.99
4_P	93_D	0.543	0.99
103_Y	200_S	0.543	0.99
12_L	17_D	0.542	0.99
173_G	176_N	0.542	0.99
175_W	178_Y	0.541	0.99
57_I	60_Y	0.541	0.99
57_I	62_L	0.540	0.99
300_I	304_Y	0.540	0.99
258_N	263_S	0.539	0.99
286_L	289_L	0.536	0.99
275_V	282_L	0.535	0.99
213_L	217_I	0.534	0.99
58_R	83_K	0.534	0.99
257_L	261_N	0.532	0.99
317_A	320_F	0.532	0.99
110_D	113_V	0.532	0.99
303_F	308_S	0.530	0.99
261_N	264_L	0.528	0.99
284_S	295_A	0.527	0.99
157_I	187_S	0.527	0.99
273_Y	284_S	0.527	0.99
223_W	227_H	0.526	0.99
53_Y	57_I	0.525	0.99
313_N	319_N	0.524	0.98
273_Y	277_A	0.524	0.98
4_P	75_L	0.524	0.98
277_A	280_V	0.523	0.98
104_V	116_V	0.522	0.98
237_K	241_R	0.522	0.98
182_E	226_G	0.517	0.98
181_T	184_L	0.514	0.98
6_K	37_G	0.512	0.98
185_D	188_L	0.510	0.98
312_M	318_L	0.509	0.98
258_N	264_L	0.508	0.98
71_K	91_D	0.508	0.98
169_I	175_W	0.507	0.98
115_A	120_L	0.505	0.98
147_G	151_V	0.503	0.98
136_I	140_I	0.500	0.98
248_I	253_F	0.500	0.98

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4p02A	1	0.9713	100	0.304	Contact Map
2z86A	2	0.6934	100	0.466	Contact Map
3bcvA	2	0.5014	100	0.487	Contact Map
2d7iA	1	0.9427	100	0.492	Contact Map
1xhbA	1	0.8997	100	0.501	Contact Map
3l7iA	4	0.0287	100	0.504	Contact Map
1qg8A	1	0.6132	100	0.504	Contact Map
5ajoA	1	0.9112	100	0.524	Contact Map
4fixA	3	0.9427	100	0.527	Contact Map
3ckjA	2	0.7106	100	0.538	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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