Q97TX4 - SULSO - GREMLIN Contacts

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Q97TX4 - Arginine deiminase, hypothetical

UniProt:	Q97TX4	Sequences: MIAEWGKLRAVGMHKPGLEVMLGLLDPSSFLYERQFNWSKARREHDNLRRVLKEEGVKIYRLRQTIVNKIRRDDRFREKVIEKVGVNNDDPEFLVELLILRPILGYEKRDKGTHLEVKLTDPLSNLYFMRDQQITTEKGIIMGRMATHQREKEVEVMKLFWEALNIKYKEIGRGKFEGGDFFPMGDFNLVGVGVRTDLEGVSELFNILNGGEIGIIHWNREEFIHLDTFFNVGSSSSVVSVRSFMEESRVAVYYDRKIIRETTLYDYVVKEKGFNLIEVSVDEAKKYVTNFLTIDDGKIVSPKISANRKLEKEYDVIEVEVSNLTGGAGGIHCMTAVIRRD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	341 (340)
Sequences:	972 (568)
Seq/√Len:	30.8

SULSO - Q97TX4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
186_D	211_G	6.973	1.00
9_R	341_D	5.565	1.00
13_M	49_R	5.168	1.00
50_R	54_E	4.361	1.00
310_L	318_E	4.325	1.00
292_L	335_T	4.282	1.00
71_R	91_P	4.263	1.00
12_G	338_I	4.231	1.00
298_K	317_I	4.183	1.00
15_K	46_D	3.847	1.00
51_V	319_V	3.780	1.00
10_A	166_I	3.661	1.00
90_D	93_F	3.630	1.00
51_V	317_I	3.500	1.00
40_K	43_R	3.415	1.00
264_L	268_V	3.207	1.00
10_A	60_Y	3.186	1.00
52_L	294_I	2.920	1.00
190_V	204_L	2.802	1.00
237_S	314_Y	2.588	1.00
269_V	272_K	2.574	1.00
321_V	325_T	2.458	0.99
50_R	53_K	2.441	0.99
29_S	121_D	2.437	0.99
55_E	315_D	2.405	0.99
272_K	279_V	2.396	0.99
261_E	265_Y	2.359	0.99
298_K	315_D	2.316	0.99
99_I	126_L	2.285	0.99
10_A	58_K	2.272	0.99
141_I	204_L	2.187	0.98
98_L	156_V	2.168	0.98
291_F	301_S	2.121	0.98
60_Y	166_I	2.034	0.98
265_Y	268_V	1.956	0.97
134_I	181_F	1.947	0.97
13_M	335_T	1.898	0.96
141_I	181_F	1.871	0.96
264_L	269_V	1.841	0.96
269_V	276_L	1.841	0.96
64_Q	92_E	1.819	0.95
187_F	212_E	1.778	0.95
272_K	276_L	1.773	0.95
62_L	99_I	1.768	0.94
192_V	215_I	1.765	0.94
136_T	181_F	1.736	0.94
269_V	279_V	1.735	0.94
188_N	213_I	1.714	0.93
174_G	200_G	1.698	0.93
217_H	249_R	1.671	0.93
47_N	320_E	1.670	0.93
261_E	264_L	1.665	0.92
268_V	277_I	1.649	0.92
91_P	94_L	1.620	0.91
303_K	318_E	1.604	0.91
66_I	95_V	1.601	0.91
14_H	19_E	1.597	0.91
264_L	267_Y	1.585	0.90
182_F	332_H	1.581	0.90
276_L	279_V	1.575	0.90
39_S	43_R	1.559	0.90
62_L	157_M	1.546	0.89
259_I	263_T	1.539	0.89
234_S	237_S	1.534	0.89
23_G	26_D	1.529	0.89
261_E	269_V	1.514	0.88
310_L	315_D	1.499	0.88
7_K	295_D	1.485	0.87
212_E	252_V	1.484	0.87
34_R	326_G	1.474	0.87
273_G	279_V	1.437	0.85
266_D	271_E	1.435	0.85
83_K	158_K	1.433	0.85
55_E	295_D	1.429	0.85
14_H	44_E	1.428	0.85
266_D	269_V	1.418	0.85
78_E	81_I	1.412	0.84
265_Y	276_L	1.412	0.84
301_S	316_V	1.411	0.84
133_Q	157_M	1.408	0.84
84_V	120_T	1.388	0.83
259_I	264_L	1.379	0.83
282_D	285_K	1.355	0.82
274_F	279_V	1.350	0.82
201_V	215_I	1.329	0.81
265_Y	269_V	1.324	0.80
147_T	194_V	1.318	0.80
128_F	287_Y	1.308	0.79
136_T	141_I	1.308	0.79
81_I	87_N	1.301	0.79
47_N	51_V	1.286	0.78
172_G	203_E	1.285	0.78
46_D	49_R	1.274	0.78
323_N	326_G	1.266	0.77
12_G	62_L	1.260	0.77
18_L	100_L	1.251	0.76
97_L	106_Y	1.247	0.76
22_L	221_E	1.243	0.76
218_W	291_F	1.241	0.76
12_G	157_M	1.241	0.76
228_T	287_Y	1.227	0.75
260_R	264_L	1.202	0.73
55_E	298_K	1.202	0.73
13_M	52_L	1.195	0.73
269_V	273_G	1.193	0.73
237_S	278_E	1.191	0.73
261_E	271_E	1.189	0.73
38_W	42_R	1.188	0.72
261_E	267_Y	1.184	0.72
134_I	143_G	1.182	0.72
290_N	333_C	1.180	0.72
275_N	312_K	1.178	0.72
60_Y	338_I	1.176	0.72
232_V	238_V	1.158	0.70
49_R	61_R	1.154	0.70
69_K	72_R	1.153	0.70
13_M	182_F	1.150	0.70
267_Y	273_G	1.142	0.69
80_V	159_L	1.141	0.69
40_K	303_K	1.140	0.69
64_Q	67_V	1.137	0.69
224_I	228_T	1.134	0.69
158_K	162_E	1.127	0.68
220_R	223_F	1.123	0.68
261_E	279_V	1.119	0.68
133_Q	149_Q	1.118	0.68
269_V	278_E	1.116	0.68
78_E	82_E	1.115	0.68
200_G	213_I	1.115	0.68
311_E	318_E	1.108	0.67
75_R	79_K	1.104	0.67
86_V	102_P	1.103	0.67
104_L	116_E	1.098	0.66
133_Q	140_I	1.093	0.66
39_S	306_A	1.084	0.65
272_K	277_I	1.083	0.65
58_K	166_I	1.083	0.65
145_M	283_E	1.079	0.65
104_L	117_V	1.070	0.64
126_L	156_V	1.066	0.64
240_S	246_E	1.060	0.64
42_R	46_D	1.060	0.64
240_S	245_M	1.057	0.63
25_L	281_V	1.055	0.63
15_K	49_R	1.050	0.63
9_R	339_R	1.047	0.63
268_V	272_K	1.038	0.62
55_E	317_I	1.032	0.61
216_I	250_V	1.032	0.61
47_N	50_R	1.021	0.61
260_R	263_T	1.017	0.60
192_V	201_V	1.016	0.60
218_W	292_L	1.008	0.60
142_M	158_K	1.006	0.59
67_V	92_E	0.987	0.58
285_K	302_P	0.984	0.58
285_K	328_A	0.981	0.57
133_Q	336_A	0.980	0.57
14_H	20_V	0.977	0.57
224_I	287_Y	0.977	0.57
72_R	75_R	0.971	0.57
266_D	273_G	0.971	0.57
31_L	125_N	0.970	0.57
303_K	320_E	0.962	0.56
48_L	335_T	0.961	0.56
62_L	338_I	0.961	0.56
272_K	275_N	0.960	0.56
184_M	189_L	0.959	0.56
92_E	96_E	0.952	0.55
55_E	294_I	0.947	0.55
132_Q	193_G	0.944	0.55
292_L	331_I	0.934	0.54
40_K	320_E	0.932	0.54
310_L	316_V	0.924	0.53
302_P	337_V	0.918	0.52
79_K	83_K	0.917	0.52
129_M	132_Q	0.917	0.52
176_F	200_G	0.915	0.52
183_P	210_G	0.915	0.52
128_F	283_E	0.913	0.52
265_Y	279_V	0.906	0.51
156_V	168_Y	0.904	0.51
267_Y	272_K	0.896	0.51
287_Y	328_A	0.896	0.51
63_R	96_E	0.894	0.51
39_S	311_E	0.890	0.50
306_A	321_V	0.890	0.50
229_F	284_A	0.888	0.50
8_L	11_V	0.886	0.50
33_E	221_E	0.885	0.50
49_R	53_K	0.881	0.49
179_G	225_H	0.880	0.49
77_R	91_P	0.879	0.49
75_R	82_E	0.878	0.49
261_E	272_K	0.876	0.49
275_N	279_V	0.870	0.49
144_R	151_E	0.868	0.48
212_E	254_Y	0.867	0.48
193_G	201_V	0.866	0.48
261_E	277_I	0.864	0.48
116_E	213_I	0.863	0.48
240_S	265_Y	0.861	0.48
292_L	332_H	0.856	0.47
41_A	133_Q	0.856	0.47
273_G	276_L	0.845	0.47
261_E	268_V	0.840	0.46
282_D	302_P	0.838	0.46
214_G	267_Y	0.835	0.46
51_V	54_E	0.835	0.46
34_R	286_K	0.833	0.46
323_N	330_G	0.828	0.45
33_E	328_A	0.824	0.45
21_M	117_V	0.824	0.45
3_A	6_G	0.818	0.44
332_H	335_T	0.815	0.44
230_F	238_V	0.815	0.44
271_E	279_V	0.815	0.44
137_E	143_G	0.814	0.44
135_T	336_A	0.813	0.44
264_L	271_E	0.807	0.44
129_M	160_F	0.807	0.44
266_D	270_K	0.804	0.43
46_D	53_K	0.801	0.43
176_F	204_L	0.800	0.43
43_R	47_N	0.798	0.43
30_F	33_E	0.798	0.43
62_L	152_K	0.790	0.42
224_I	328_A	0.787	0.42
285_K	326_G	0.787	0.42
7_K	110_D	0.785	0.42
229_F	244_F	0.782	0.42
161_W	336_A	0.782	0.42
264_L	272_K	0.776	0.41
133_Q	161_W	0.776	0.41
65_T	68_N	0.775	0.41
229_F	285_K	0.772	0.41
188_N	204_L	0.772	0.41
261_E	276_L	0.771	0.41
135_T	161_W	0.767	0.40
76_F	80_V	0.767	0.40
198_L	215_I	0.765	0.40
252_V	271_E	0.765	0.40
253_Y	256_R	0.762	0.40
62_L	129_M	0.762	0.40
258_I	267_Y	0.761	0.40
21_M	306_A	0.761	0.40
69_K	80_V	0.754	0.39
146_A	175_K	0.752	0.39
138_K	207_I	0.750	0.39
140_I	161_W	0.747	0.39
128_F	145_M	0.746	0.39
264_L	273_G	0.746	0.39
120_T	312_K	0.741	0.38
26_D	116_E	0.736	0.38
75_R	78_E	0.734	0.38
302_P	328_A	0.732	0.38
137_E	185_G	0.732	0.38
214_G	250_V	0.723	0.37
299_I	310_L	0.721	0.37
29_S	155_E	0.721	0.37
22_L	26_D	0.718	0.37
18_L	96_E	0.716	0.37
200_G	203_E	0.714	0.36
83_K	171_I	0.713	0.36
269_V	274_F	0.713	0.36
10_A	339_R	0.712	0.36
83_K	176_F	0.710	0.36
267_Y	276_L	0.709	0.36
109_R	112_G	0.706	0.36
228_T	328_A	0.704	0.36
39_S	42_R	0.702	0.36
267_Y	271_E	0.699	0.35
2_I	7_K	0.698	0.35
15_K	47_N	0.698	0.35
47_N	258_I	0.696	0.35
284_A	287_Y	0.696	0.35
221_E	282_D	0.695	0.35
283_E	287_Y	0.695	0.35
302_P	321_V	0.692	0.35
198_L	202_S	0.692	0.35
43_R	50_R	0.692	0.35
68_N	165_N	0.691	0.35
54_E	262_T	0.690	0.35
118_K	184_M	0.690	0.35
221_E	328_A	0.686	0.34
76_F	79_K	0.683	0.34
183_P	193_G	0.683	0.34
282_D	326_G	0.683	0.34
21_M	38_W	0.678	0.34
37_N	40_K	0.677	0.34
145_M	327_G	0.676	0.34
124_S	328_A	0.675	0.34
65_T	160_F	0.673	0.33
71_R	82_E	0.672	0.33
183_P	232_V	0.671	0.33
2_I	210_G	0.663	0.33
234_S	278_E	0.662	0.33
200_G	310_L	0.661	0.33
246_E	265_Y	0.659	0.32
19_E	44_E	0.659	0.32
64_Q	105_G	0.659	0.32
218_W	332_H	0.659	0.32
5_W	235_S	0.658	0.32
79_K	82_E	0.658	0.32
150_R	179_G	0.656	0.32
150_R	178_G	0.656	0.32
71_R	92_E	0.656	0.32
240_S	276_L	0.655	0.32
66_I	94_L	0.654	0.32
62_L	160_F	0.653	0.32
118_K	145_M	0.653	0.32
300_V	319_V	0.652	0.32
173_R	203_E	0.652	0.32
149_Q	301_S	0.649	0.32
174_G	203_E	0.648	0.32
134_I	137_E	0.646	0.31
177_E	195_R	0.646	0.31
150_R	225_H	0.643	0.31
224_I	284_A	0.642	0.31
329_G	333_C	0.640	0.31
15_K	42_R	0.638	0.31
101_R	309_K	0.637	0.31
150_R	153_E	0.634	0.31
294_I	300_V	0.633	0.31
124_S	194_V	0.630	0.30
155_E	223_F	0.630	0.30
175_K	197_D	0.626	0.30
68_N	71_R	0.624	0.30
68_N	164_L	0.623	0.30
83_K	102_P	0.623	0.30
229_F	282_D	0.623	0.30
192_V	197_D	0.622	0.30
12_G	160_F	0.620	0.30
38_W	182_F	0.619	0.30
42_R	96_E	0.619	0.30
14_H	156_V	0.619	0.30
231_N	302_P	0.618	0.30
90_D	109_R	0.617	0.30
143_G	157_M	0.616	0.29
183_P	238_V	0.614	0.29
20_V	44_E	0.614	0.29
314_Y	319_V	0.614	0.29
10_A	167_K	0.614	0.29
128_F	152_K	0.614	0.29
78_E	341_D	0.613	0.29
271_E	274_F	0.610	0.29
18_L	176_F	0.610	0.29
26_D	98_L	0.610	0.29
21_M	42_R	0.609	0.29
171_I	207_I	0.609	0.29
153_E	178_G	0.609	0.29
131_D	150_R	0.607	0.29
160_F	164_L	0.607	0.29
52_L	292_L	0.606	0.29
268_V	279_V	0.605	0.29
145_M	287_Y	0.603	0.29
232_V	245_M	0.602	0.29
197_D	215_I	0.601	0.28
305_S	337_V	0.601	0.28
260_R	267_Y	0.600	0.28
237_S	297_G	0.599	0.28
124_S	231_N	0.599	0.28
228_T	284_A	0.598	0.28
215_I	341_D	0.598	0.28
15_K	61_R	0.598	0.28
134_I	139_G	0.598	0.28
79_K	158_K	0.597	0.28
216_I	248_S	0.597	0.28
47_N	54_E	0.595	0.28
223_F	241_V	0.593	0.28
291_F	331_I	0.592	0.28
274_F	277_I	0.591	0.28
250_V	264_L	0.591	0.28
60_Y	339_R	0.591	0.28
135_T	316_V	0.588	0.28
40_K	325_T	0.588	0.28
259_I	267_Y	0.587	0.28
127_Y	145_M	0.586	0.27
192_V	246_E	0.586	0.27
150_R	177_E	0.585	0.27
178_G	225_H	0.583	0.27
131_D	178_G	0.582	0.27
285_K	330_G	0.582	0.27
73_D	87_N	0.582	0.27
30_F	149_Q	0.581	0.27
91_P	294_I	0.580	0.27
22_L	319_V	0.580	0.27
298_K	303_K	0.580	0.27
284_A	290_N	0.579	0.27
282_D	328_A	0.578	0.27
126_L	152_K	0.578	0.27
261_E	273_G	0.577	0.27
256_R	341_D	0.576	0.27
153_E	179_G	0.575	0.27
20_V	146_A	0.574	0.27
173_R	176_F	0.574	0.27
130_R	150_R	0.573	0.27
147_T	175_K	0.571	0.27
288_V	331_I	0.571	0.27
34_R	322_S	0.570	0.26
99_I	129_M	0.570	0.26
266_D	272_K	0.569	0.26
299_I	314_Y	0.568	0.26
155_E	326_G	0.568	0.26
186_D	209_N	0.567	0.26
136_T	332_H	0.567	0.26
31_L	224_I	0.567	0.26
302_P	305_S	0.567	0.26
118_K	287_Y	0.567	0.26
231_N	285_K	0.566	0.26
102_P	306_A	0.565	0.26
77_R	81_I	0.564	0.26
134_I	318_E	0.563	0.26
137_E	184_M	0.563	0.26
131_D	153_E	0.563	0.26
141_I	176_F	0.563	0.26
52_L	57_V	0.562	0.26
300_V	311_E	0.562	0.26
110_D	199_E	0.561	0.26
153_E	225_H	0.561	0.26
34_R	282_D	0.561	0.26
164_L	167_K	0.560	0.26
282_D	330_G	0.560	0.26
238_V	277_I	0.559	0.26
197_D	200_G	0.559	0.26
77_R	94_L	0.558	0.26
142_M	308_R	0.557	0.26
304_I	326_G	0.557	0.26
64_Q	97_L	0.557	0.26
287_Y	321_V	0.555	0.26
93_F	176_F	0.554	0.25
121_D	200_G	0.553	0.25
256_R	311_E	0.553	0.25
234_S	314_Y	0.553	0.25
234_S	296_D	0.552	0.25
186_D	214_G	0.551	0.25
13_M	61_R	0.549	0.25
131_D	179_G	0.548	0.25
269_V	277_I	0.548	0.25
143_G	239_V	0.545	0.25
26_D	95_V	0.544	0.25
140_I	157_M	0.544	0.25
136_T	169_K	0.543	0.25
6_G	165_N	0.543	0.25
256_R	300_V	0.542	0.25
301_S	308_R	0.542	0.25
290_N	335_T	0.541	0.25
109_R	138_K	0.540	0.25
212_E	222_E	0.539	0.25
77_R	82_E	0.539	0.25
302_P	308_R	0.538	0.25
26_D	281_V	0.538	0.25
159_L	163_A	0.537	0.24
107_E	119_L	0.536	0.24
146_A	223_F	0.536	0.24
98_L	123_L	0.536	0.24
26_D	325_T	0.536	0.24
64_Q	100_L	0.535	0.24
213_I	262_T	0.534	0.24
131_D	225_H	0.534	0.24
41_A	135_T	0.534	0.24
136_T	295_D	0.533	0.24
283_E	330_G	0.532	0.24
245_M	278_E	0.532	0.24
221_E	285_K	0.531	0.24
247_E	279_V	0.530	0.24
66_I	69_K	0.529	0.24
72_R	91_P	0.528	0.24
150_R	329_G	0.527	0.24
133_Q	308_R	0.526	0.24
34_R	285_K	0.526	0.24
77_R	162_E	0.525	0.24
183_P	332_H	0.524	0.24
37_N	325_T	0.523	0.24
181_F	200_G	0.522	0.24
263_T	266_D	0.522	0.24
13_M	183_P	0.521	0.24
64_Q	266_D	0.521	0.24
23_G	119_L	0.519	0.23
103_I	119_L	0.518	0.23
245_M	248_S	0.518	0.23
80_V	84_V	0.515	0.23
282_D	305_S	0.515	0.23
303_K	310_L	0.514	0.23
91_P	243_S	0.514	0.23
130_R	179_G	0.513	0.23
156_V	334_M	0.513	0.23
130_R	178_G	0.513	0.23
97_L	102_P	0.513	0.23
14_H	99_I	0.512	0.23
177_E	225_H	0.511	0.23
171_I	190_V	0.511	0.23
200_G	336_A	0.510	0.23
20_V	140_I	0.509	0.23
43_R	70_I	0.509	0.23
73_D	78_E	0.509	0.23
81_I	98_L	0.508	0.23
142_M	217_H	0.508	0.23
327_G	334_M	0.507	0.23
324_L	327_G	0.507	0.23
153_E	177_E	0.505	0.23
182_F	238_V	0.505	0.23
33_E	222_E	0.505	0.23
132_Q	139_G	0.504	0.23
75_R	93_F	0.504	0.23
135_T	157_M	0.504	0.23
214_G	218_W	0.503	0.22
150_R	227_D	0.502	0.22
130_R	225_H	0.500	0.22
189_L	332_H	0.500	0.22

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2a9gA	3	0.9971	100	0.341	Contact Map
4bofA	4	0.9971	100	0.343	Contact Map
4e4jA	4	0.9883	100	0.345	Contact Map
1s9rA	2	0.9883	100	0.352	Contact Map
1bwdA	1	0.8152	100	0.523	Contact Map
1jdwA	2	0.8182	100	0.523	Contact Map
1h70A	1	0.7185	100	0.561	Contact Map
3i4aA	1	0.7595	100	0.562	Contact Map
2ci1A	1	0.7537	100	0.578	Contact Map
2ewoA	4	0.8475	100	0.742	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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