Q7LYJ9 - SULSO - GREMLIN Contacts

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Q7LYJ9 - Uncharacterized protein

UniProt:	Q7LYJ9	Sequences: MSIRDSAKLFGPAWIALLADADAASILGGLSTGEEYGYKLIWFVMLLSLPIFIIQEASGRLGAIAGKGIGELIREHYSTRISILSIFPIFLVDFFTYLSEYAGIAIGCYLIGVNPLFGLIVFFILHVLVVLTKNYEITEKYLVVISVILLLSALIMVGPKLSFTGQDVFYFSTSKNFLFFIAVNVGAVVTPPCMLVYQSSATAIKYSKIGIDNSKKTSWIGIETLLGAIITELIIVLSEMIGTSIGNIDPIDPAQLLYNLGSVHYIFGITLISAGFLTLIVVSLSSAWGLLE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	292 (278)
Sequences:	3754 (2250)
Seq/√Len:	135.0

ECOLI - MNTH
BACSU - MNTH YCSG
SULSO - Q7LYJ9 Q97UL0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
67_K	75_E	10.011	1.00
160_K	163_F	5.723	1.00
255_Q	258_Y	3.640	1.00
83_I	87_F	3.345	1.00
258_Y	262_S	3.005	1.00
41_I	236_V	2.973	1.00
247_N	250_P	2.932	1.00
56_E	60_R	2.930	1.00
31_S	35_E	2.871	1.00
236_V	240_M	2.776	1.00
168_V	236_V	2.637	1.00
28_G	183_V	2.563	1.00
258_Y	264_H	2.561	1.00
107_G	272_I	2.535	1.00
200_S	288_W	2.527	1.00
161_L	164_T	2.405	1.00
246_G	249_D	2.379	1.00
164_T	240_M	2.301	1.00
114_N	117_F	2.281	1.00
252_D	255_Q	2.251	1.00
174_S	177_F	2.247	1.00
136_E	140_K	2.227	1.00
122_F	272_I	2.195	1.00
108_C	111_I	2.119	1.00
166_Q	170_Y	2.113	1.00
67_K	72_L	2.043	1.00
61_L	72_L	2.013	1.00
80_R	84_L	1.984	1.00
105_A	115_P	1.975	1.00
246_G	250_P	1.937	1.00
56_E	221_G	1.926	1.00
68_G	71_E	1.906	1.00
36_Y	174_S	1.881	1.00
104_I	122_F	1.869	1.00
59_G	220_I	1.837	1.00
52_F	225_L	1.836	1.00
218_S	222_I	1.833	1.00
159_P	164_T	1.829	1.00
163_F	167_D	1.810	1.00
153_A	241_I	1.797	1.00
87_F	91_L	1.762	1.00
161_L	165_G	1.752	1.00
27_L	253_P	1.732	1.00
36_Y	177_F	1.724	1.00
167_D	170_Y	1.695	1.00
222_I	226_L	1.695	1.00
14_W	227_G	1.679	1.00
78_S	81_I	1.653	1.00
17_L	21_A	1.633	1.00
155_I	159_P	1.632	1.00
6_S	222_I	1.627	1.00
45_M	232_E	1.606	1.00
240_M	243_T	1.590	1.00
64_I	217_T	1.588	1.00
140_K	143_V	1.586	1.00
47_L	188_V	1.580	1.00
187_A	190_T	1.579	1.00
136_E	139_E	1.562	1.00
108_C	118_G	1.529	1.00
139_E	143_V	1.476	1.00
263_V	266_I	1.475	1.00
139_E	205_K	1.474	1.00
190_T	193_C	1.468	1.00
265_Y	269_I	1.462	1.00
29_G	235_I	1.452	1.00
162_S	165_G	1.442	1.00
146_S	277_L	1.431	1.00
44_V	239_E	1.418	1.00
125_L	276_F	1.417	1.00
139_E	146_S	1.416	1.00
73_I	85_S	1.407	1.00
108_C	272_I	1.402	1.00
154_L	240_M	1.390	1.00
165_G	169_F	1.385	1.00
283_S	287_A	1.349	1.00
79_T	83_I	1.342	1.00
168_V	171_F	1.338	1.00
113_V	117_F	1.307	1.00
255_Q	259_N	1.304	1.00
50_P	185_V	1.301	1.00
19_A	281_V	1.279	1.00
232_E	236_V	1.279	1.00
74_R	82_S	1.275	1.00
36_Y	176_N	1.262	1.00
238_S	243_T	1.254	1.00
145_I	273_S	1.231	1.00
56_E	217_T	1.228	1.00
20_D	231_T	1.226	1.00
153_A	157_V	1.224	1.00
152_S	156_M	1.217	1.00
117_F	120_I	1.216	1.00
101_Y	123_F	1.212	1.00
55_Q	70_G	1.204	1.00
194_M	281_V	1.198	1.00
88_P	93_D	1.190	0.99
100_E	103_G	1.181	0.99
88_P	92_V	1.179	0.99
57_A	61_L	1.179	0.99
30_L	253_P	1.175	0.99
125_L	128_L	1.172	0.99
229_I	233_L	1.172	0.99
231_T	235_I	1.169	0.99
23_A	275_G	1.167	0.99
96_T	100_E	1.158	0.99
26_I	270_T	1.156	0.99
137_I	140_K	1.149	0.99
68_G	203_A	1.131	0.99
116_L	120_I	1.130	0.99
173_T	181_I	1.127	0.99
32_T	184_N	1.126	0.99
128_L	132_T	1.125	0.99
160_K	164_T	1.110	0.99
244_S	247_N	1.102	0.99
65_A	72_L	1.085	0.99
166_Q	172_S	1.084	0.99
32_T	180_F	1.061	0.99
25_S	29_G	1.059	0.99
162_S	166_Q	1.053	0.99
239_E	243_T	1.050	0.99
100_E	187_A	1.049	0.99
15_I	281_V	1.045	0.99
217_T	221_G	1.044	0.99
202_T	205_K	1.039	0.99
22_D	25_S	1.025	0.98
109_Y	251_I	1.024	0.98
113_V	118_G	1.015	0.98
111_I	265_Y	1.013	0.98
58_S	62_G	1.007	0.98
153_A	156_M	1.000	0.98
254_A	264_H	0.996	0.98
100_E	278_T	0.992	0.98
235_I	239_E	0.992	0.98
37_G	246_G	0.992	0.98
102_A	105_A	0.984	0.98
63_A	213_N	0.981	0.98
48_S	229_I	0.961	0.98
165_G	168_V	0.940	0.97
159_P	240_M	0.928	0.97
226_L	229_I	0.926	0.97
21_A	230_I	0.925	0.97
265_Y	268_G	0.921	0.97
194_M	198_Q	0.917	0.97
72_L	75_E	0.917	0.97
238_S	242_G	0.916	0.97
49_L	53_I	0.915	0.97
18_L	146_S	0.912	0.97
237_L	240_M	0.903	0.97
35_E	176_N	0.901	0.97
119_L	123_F	0.899	0.97
113_V	121_V	0.898	0.97
262_S	265_Y	0.893	0.96
29_G	238_S	0.888	0.96
158_G	161_L	0.887	0.96
273_S	277_L	0.887	0.96
51_I	188_V	0.881	0.96
19_A	195_L	0.869	0.96
143_V	147_V	0.867	0.96
19_A	26_I	0.866	0.96
139_E	142_L	0.865	0.96
237_L	244_S	0.857	0.95
20_D	193_C	0.856	0.95
216_K	224_T	0.854	0.95
101_Y	118_G	0.853	0.95
151_L	233_L	0.851	0.95
109_Y	115_P	0.850	0.95
52_F	229_I	0.849	0.95
112_G	117_F	0.845	0.95
154_L	237_L	0.841	0.95
124_I	128_L	0.840	0.95
172_S	177_F	0.838	0.95
270_T	274_A	0.836	0.95
38_Y	167_D	0.833	0.95
93_D	286_S	0.832	0.95
86_I	90_F	0.830	0.95
151_L	237_L	0.827	0.94
19_A	192_P	0.825	0.94
71_E	203_A	0.824	0.94
67_K	71_E	0.820	0.94
190_T	195_L	0.819	0.94
15_I	18_L	0.817	0.94
148_I	152_S	0.817	0.94
155_I	158_G	0.816	0.94
192_P	195_L	0.815	0.94
67_K	76_H	0.811	0.94
166_Q	171_F	0.811	0.94
223_E	227_G	0.810	0.94
55_Q	190_T	0.805	0.94
189_V	192_P	0.804	0.94
237_L	241_I	0.799	0.93
55_Q	192_P	0.796	0.93
144_V	265_Y	0.795	0.93
136_E	142_L	0.795	0.93
20_D	25_S	0.794	0.93
55_Q	188_V	0.793	0.93
13_A	107_G	0.791	0.93
36_Y	180_F	0.790	0.93
110_L	265_Y	0.788	0.93
234_I	238_S	0.783	0.93
152_S	155_I	0.782	0.93
163_F	166_Q	0.779	0.93
256_L	270_T	0.778	0.92
83_I	91_L	0.775	0.92
96_T	99_S	0.775	0.92
103_G	159_P	0.774	0.92
150_L	253_P	0.774	0.92
147_V	236_V	0.772	0.92
275_G	278_T	0.767	0.92
51_I	228_A	0.763	0.92
232_E	235_I	0.762	0.92
228_A	234_I	0.761	0.92
86_I	93_D	0.757	0.91
151_L	155_I	0.754	0.91
231_T	237_L	0.754	0.91
108_C	113_V	0.753	0.91
18_L	22_D	0.753	0.91
220_I	224_T	0.752	0.91
12_P	223_E	0.751	0.91
29_G	96_T	0.750	0.91
77_Y	81_I	0.747	0.91
189_V	271_L	0.743	0.91
167_D	174_S	0.742	0.91
55_Q	189_V	0.742	0.91
21_A	277_L	0.741	0.91
213_N	217_T	0.740	0.90
44_V	184_N	0.737	0.90
117_F	165_G	0.735	0.90
251_I	254_A	0.735	0.90
135_Y	139_E	0.734	0.90
142_L	280_I	0.733	0.90
35_E	148_I	0.732	0.90
160_K	165_G	0.731	0.90
135_Y	288_W	0.730	0.90
230_I	234_I	0.728	0.90
22_D	29_G	0.727	0.90
22_D	100_E	0.727	0.90
25_S	187_A	0.726	0.90
193_C	199_S	0.723	0.89
22_D	96_T	0.720	0.89
20_D	51_I	0.716	0.89
45_M	168_V	0.716	0.89
21_A	29_G	0.715	0.89
59_G	198_Q	0.714	0.89
214_S	218_S	0.710	0.89
70_G	196_V	0.707	0.88
57_A	60_R	0.704	0.88
144_V	152_S	0.704	0.88
251_I	255_Q	0.703	0.88
94_F	97_Y	0.702	0.88
235_I	243_T	0.701	0.88
224_T	228_A	0.699	0.88
97_Y	100_E	0.698	0.88
237_L	243_T	0.694	0.87
237_L	247_N	0.690	0.87
48_S	232_E	0.689	0.87
58_S	199_S	0.688	0.87
40_L	178_L	0.684	0.87
240_M	244_S	0.681	0.86
90_F	94_F	0.680	0.86
84_L	88_P	0.680	0.86
193_C	196_V	0.680	0.86
27_L	99_S	0.680	0.86
17_L	223_E	0.678	0.86
38_Y	160_K	0.676	0.86
62_G	199_S	0.676	0.86
16_A	194_M	0.675	0.86
238_S	257_L	0.675	0.86
232_E	243_T	0.674	0.86
97_Y	102_A	0.673	0.86
154_L	161_L	0.671	0.86
192_P	200_S	0.669	0.85
235_I	238_S	0.668	0.85
89_I	92_V	0.668	0.85
37_G	249_D	0.668	0.85
237_L	242_G	0.662	0.85
32_T	44_V	0.661	0.85
182_A	281_V	0.659	0.85
114_N	124_I	0.657	0.84
124_I	162_S	0.656	0.84
217_T	220_I	0.654	0.84
11_G	223_E	0.651	0.84
205_K	223_E	0.649	0.84
107_G	268_G	0.644	0.83
39_K	43_F	0.642	0.83
58_S	69_I	0.642	0.83
24_A	58_S	0.637	0.83
54_I	131_L	0.636	0.83
142_L	146_S	0.636	0.83
31_S	245_I	0.636	0.83
89_I	93_D	0.633	0.82
30_L	238_S	0.632	0.82
15_I	194_M	0.631	0.82
23_A	198_Q	0.631	0.82
60_R	274_A	0.630	0.82
64_I	203_A	0.629	0.82
26_I	238_S	0.627	0.82
19_A	194_M	0.627	0.82
190_T	235_I	0.626	0.82
69_I	199_S	0.625	0.81
69_I	85_S	0.625	0.81
6_S	10_F	0.625	0.81
37_G	243_T	0.624	0.81
150_L	157_V	0.623	0.81
121_V	125_L	0.622	0.81
149_L	266_I	0.619	0.81
25_S	190_T	0.619	0.81
173_T	177_F	0.617	0.81
62_G	69_I	0.617	0.81
15_I	19_A	0.615	0.80
166_Q	169_F	0.615	0.80
143_V	146_S	0.613	0.80
118_G	121_V	0.610	0.80
63_A	220_I	0.610	0.80
244_S	249_D	0.609	0.80
162_S	169_F	0.607	0.80
183_V	188_V	0.607	0.80
212_D	233_L	0.606	0.79
30_L	122_F	0.605	0.79
206_Y	213_N	0.604	0.79
136_E	146_S	0.601	0.79
44_V	241_I	0.598	0.79
49_L	52_F	0.596	0.78
104_I	123_F	0.596	0.78
238_S	241_I	0.596	0.78
20_D	194_M	0.596	0.78
47_L	180_F	0.595	0.78
31_S	253_P	0.595	0.78
216_K	219_W	0.594	0.78
128_L	200_S	0.593	0.78
132_T	138_T	0.592	0.78
16_A	195_L	0.591	0.78
279_L	282_V	0.591	0.78
60_R	217_T	0.591	0.78
16_A	224_T	0.589	0.77
42_W	220_I	0.589	0.77
233_L	240_M	0.586	0.77
100_E	193_C	0.584	0.77
284_L	288_W	0.582	0.77
126_H	279_L	0.582	0.77
20_D	198_Q	0.582	0.77
151_L	157_V	0.581	0.77
94_F	202_T	0.580	0.76
80_R	83_I	0.580	0.76
24_A	206_Y	0.580	0.76
13_A	227_G	0.578	0.76
253_P	267_F	0.577	0.76
21_A	150_L	0.577	0.76
180_F	185_V	0.576	0.76
48_S	52_F	0.576	0.76
69_I	196_V	0.575	0.76
121_V	124_I	0.574	0.76
59_G	66_G	0.572	0.75
127_V	266_I	0.572	0.75
175_K	250_P	0.565	0.75
10_F	14_W	0.560	0.74
85_S	88_P	0.559	0.74
194_M	197_Y	0.559	0.74
97_Y	279_L	0.556	0.73
190_T	198_Q	0.555	0.73
27_L	31_S	0.555	0.73
86_I	282_V	0.554	0.73
20_D	190_T	0.554	0.73
197_Y	201_A	0.553	0.73
119_L	122_F	0.552	0.73
13_A	17_L	0.551	0.73
236_V	239_E	0.550	0.73
30_L	188_V	0.550	0.73
154_L	157_V	0.542	0.71
163_F	175_K	0.542	0.71
124_I	166_Q	0.541	0.71
104_I	107_G	0.541	0.71
226_L	249_D	0.540	0.71
38_Y	139_E	0.539	0.71
225_L	229_I	0.539	0.71
62_G	203_A	0.539	0.71
91_L	136_E	0.538	0.71
154_L	241_I	0.538	0.71
175_K	179_F	0.538	0.71
23_A	103_G	0.538	0.71
26_I	281_V	0.537	0.71
141_Y	147_V	0.536	0.71
111_I	121_V	0.535	0.71
16_A	19_A	0.533	0.70
153_A	259_N	0.533	0.70
17_L	63_A	0.531	0.70
55_Q	196_V	0.531	0.70
84_L	87_F	0.531	0.70
187_A	192_P	0.531	0.70
148_I	255_Q	0.530	0.70
211_I	214_S	0.530	0.70
34_E	243_T	0.528	0.70
212_D	216_K	0.528	0.70
201_A	204_I	0.527	0.69
103_G	275_G	0.526	0.69
25_S	235_I	0.525	0.69
230_I	237_L	0.523	0.69
10_F	165_G	0.522	0.69
23_A	99_S	0.520	0.68
173_T	176_N	0.519	0.68
34_E	37_G	0.519	0.68
48_S	231_T	0.517	0.68
179_F	185_V	0.517	0.68
144_V	172_S	0.516	0.68
249_D	259_N	0.516	0.68
212_D	218_S	0.515	0.68
103_G	107_G	0.515	0.68
26_I	187_A	0.513	0.67
35_E	39_K	0.513	0.67
117_F	124_I	0.513	0.67
216_K	220_I	0.510	0.67
150_L	257_L	0.510	0.67
134_N	137_I	0.509	0.67
156_M	259_N	0.509	0.67
44_V	48_S	0.509	0.67
22_D	278_T	0.508	0.67
148_I	162_S	0.506	0.66
100_E	192_P	0.505	0.66
73_I	77_Y	0.500	0.65

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4wgvA	2	0.9384	100	0.199	Contact Map
3dh4A	3	0.9247	98.8	0.84	Contact Map
2xq2A	2	0.9281	98.3	0.865	Contact Map
3l1lA	2	0.9007	97.2	0.893	Contact Map
4djkA	2	0.8836	96.8	0.9	Contact Map
3giaA	1	0.9349	96.7	0.901	Contact Map
2jlnA	1	0.9623	96.6	0.903	Contact Map
4us3A	1	0.9521	87.7	0.93	Contact Map
2a65A	2	0.9658	84.7	0.933	Contact Map
4xp4A	1	0.9315	49.3	0.949	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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