Q7LY02 - SULSO - GREMLIN Contacts

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Q7LY02 - Uncharacterized protein

UniProt:	Q7LY02	Sequences: MEMDMGSELGYDYRVLKLGGSLITCKDVPRCVKLEVLRRVSEEIRKFVNENPDKKIILLHGGGSFGHYEASIFDDNRIVRTSEAMQELNYIVAKHLLKSGIKAISVPGKFYTFDAVLSALEKDLVPLIYGDVKFDGSIISADDMSIDIAKRLNARLLFAIDKAGIIGRGGGVISELRGIDEVSILMQTNYYDITGGILSKIKKIFENNLNALIFDGSKTGNIYLALRGYNIGTLVRGNPNA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	241 (219)
Sequences:	318 (249)
Seq/√Len:	16.8

HALSA - Q9HQI5
SULSO - Q7LY02

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
62_G	85_M	5.714	1.00
59_L	141_A	3.668	1.00
70_A	138_I	3.662	1.00
163_A	215_D	3.654	1.00
32_V	37_L	3.632	1.00
170_G	173_I	3.558	1.00
157_L	214_F	3.320	0.99
29_P	62_G	3.256	0.99
173_I	176_L	3.155	0.99
101_I	125_V	3.013	0.99
139_I	144_M	2.875	0.98
170_G	176_L	2.871	0.98
157_L	225_A	2.808	0.98
224_L	229_Y	2.688	0.97
59_L	142_D	2.407	0.94
73_F	77_R	2.225	0.92
42_E	99_S	2.204	0.91
38_R	95_H	2.131	0.90
43_E	220_G	2.084	0.89
16_L	106_V	2.076	0.88
116_V	128_I	2.062	0.88
158_F	204_I	1.999	0.86
132_V	138_I	1.985	0.86
149_A	154_A	1.967	0.85
15_V	145_S	1.924	0.84
18_L	23_I	1.895	0.83
103_A	127_L	1.833	0.81
59_L	145_S	1.821	0.81
138_I	194_T	1.736	0.77
166_I	170_G	1.693	0.75
70_A	104_I	1.690	0.75
166_I	172_V	1.685	0.75
60_H	141_A	1.670	0.74
22_L	216_G	1.650	0.73
204_I	211_A	1.636	0.73
58_L	71_S	1.634	0.73
141_A	145_S	1.631	0.73
15_V	142_D	1.601	0.71
172_V	204_I	1.586	0.70
23_I	88_L	1.563	0.69
26_K	131_D	1.555	0.69
17_K	20_G	1.548	0.68
145_S	156_L	1.548	0.68
85_M	135_D	1.537	0.68
118_S	122_K	1.514	0.67
178_G	182_V	1.502	0.66
62_G	142_D	1.488	0.65
16_L	37_L	1.471	0.64
24_T	31_C	1.458	0.64
146_I	203_K	1.453	0.63
44_I	94_K	1.391	0.60
81_T	85_M	1.376	0.59
142_D	145_S	1.353	0.58
41_S	205_F	1.317	0.56
59_L	128_I	1.316	0.56
214_F	225_A	1.308	0.55
34_L	91_I	1.296	0.54
160_I	201_I	1.266	0.53
24_T	88_L	1.247	0.51
28_V	31_C	1.245	0.51
41_S	96_L	1.234	0.51
32_V	91_I	1.228	0.50
16_L	157_L	1.220	0.50
37_L	91_I	1.215	0.50
159_A	216_G	1.209	0.49
163_A	166_I	1.206	0.49
62_G	84_A	1.203	0.49
143_D	203_K	1.202	0.49
66_G	130_G	1.200	0.49
43_E	221_N	1.180	0.47
29_P	84_A	1.179	0.47
159_A	211_A	1.170	0.47
16_L	214_F	1.168	0.47
160_I	213_I	1.159	0.46
15_V	141_A	1.150	0.46
96_L	101_I	1.147	0.45
31_C	174_S	1.137	0.45
116_V	222_I	1.136	0.45
106_V	119_A	1.115	0.44
201_I	213_I	1.107	0.43
30_R	84_A	1.103	0.43
70_A	85_M	1.102	0.43
70_A	135_D	1.085	0.42
172_V	175_E	1.082	0.42
226_L	229_Y	1.081	0.42
85_M	142_D	1.080	0.42
39_R	43_E	1.064	0.41
16_L	101_I	1.063	0.41
160_I	197_I	1.060	0.40
77_R	135_D	1.058	0.40
29_P	68_Y	1.055	0.40
58_L	213_I	1.051	0.40
70_A	132_V	1.051	0.40
58_L	73_F	1.036	0.39
15_V	102_K	1.023	0.38
15_V	148_I	1.016	0.38
225_A	228_G	1.015	0.38
18_L	138_I	1.012	0.38
62_G	69_E	1.008	0.37
70_A	215_D	0.997	0.37
85_M	141_A	0.989	0.36
216_G	221_N	0.986	0.36
77_R	81_T	0.986	0.36
94_K	187_Q	0.986	0.36
231_I	235_V	0.984	0.36
21_S	82_S	0.980	0.36
177_R	180_D	0.979	0.36
66_G	85_M	0.978	0.36
179_I	186_M	0.974	0.36
172_V	211_A	0.972	0.35
82_S	225_A	0.958	0.35
93_A	100_G	0.953	0.34
45_R	231_I	0.952	0.34
221_N	235_V	0.950	0.34
198_L	202_K	0.944	0.34
155_R	210_N	0.943	0.34
206_E	226_L	0.939	0.34
85_M	216_G	0.938	0.34
35_E	150_K	0.931	0.33
15_V	120_L	0.928	0.33
113_F	135_D	0.928	0.33
41_S	95_H	0.925	0.33
30_R	87_E	0.920	0.33
137_S	235_V	0.912	0.32
29_P	85_M	0.912	0.32
199_S	204_I	0.908	0.32
19_G	24_T	0.901	0.32
20_G	24_T	0.901	0.32
210_N	213_I	0.898	0.32
57_I	162_K	0.897	0.32
119_A	134_F	0.894	0.31
140_S	194_T	0.892	0.31
47_F	226_L	0.890	0.31
62_G	129_Y	0.889	0.31
64_S	196_G	0.882	0.31
24_T	64_S	0.881	0.31
18_L	37_L	0.878	0.31
172_V	176_L	0.872	0.30
169_G	172_V	0.870	0.30
64_S	141_A	0.864	0.30
127_L	134_F	0.863	0.30
143_D	211_A	0.860	0.30
93_A	127_L	0.858	0.30
75_D	81_T	0.849	0.29
43_E	215_D	0.846	0.29
215_D	218_K	0.845	0.29
159_A	221_N	0.842	0.29
33_K	181_E	0.839	0.29
81_T	135_D	0.837	0.29
57_I	206_E	0.835	0.28
45_R	49_N	0.831	0.28
156_L	210_N	0.826	0.28
107_P	125_V	0.820	0.28
81_T	84_A	0.818	0.28
96_L	103_A	0.817	0.28
60_H	89_N	0.812	0.27
140_S	193_I	0.808	0.27
36_V	62_G	0.808	0.27
116_V	171_G	0.803	0.27
96_L	107_P	0.801	0.27
77_R	208_N	0.799	0.27
98_K	103_A	0.797	0.27
160_I	167_G	0.797	0.27
171_G	189_N	0.794	0.26
85_M	138_I	0.792	0.26
180_D	208_N	0.789	0.26
139_I	224_L	0.782	0.26
117_L	148_I	0.781	0.26
59_L	229_Y	0.780	0.26
78_I	134_F	0.778	0.26
37_L	158_F	0.774	0.26
123_D	138_I	0.771	0.25
81_T	129_Y	0.771	0.25
35_E	234_L	0.765	0.25
60_H	140_S	0.765	0.25
132_V	194_T	0.765	0.25
86_Q	129_Y	0.764	0.25
17_K	24_T	0.760	0.25
211_A	216_G	0.758	0.25
109_K	167_G	0.756	0.25
62_G	68_Y	0.754	0.25
165_I	226_L	0.754	0.25
33_K	93_A	0.753	0.25
131_D	141_A	0.752	0.25
15_V	59_L	0.749	0.24
23_I	185_L	0.746	0.24
145_S	158_F	0.744	0.24
39_R	44_I	0.742	0.24
220_G	225_A	0.741	0.24
98_K	177_R	0.740	0.24
16_L	149_A	0.739	0.24
82_S	106_V	0.736	0.24
170_G	175_E	0.733	0.24
33_K	75_D	0.728	0.24
15_V	144_M	0.727	0.24
117_L	120_L	0.726	0.23
108_G	179_I	0.725	0.23
44_I	154_A	0.724	0.23
169_G	176_L	0.717	0.23
148_I	188_T	0.717	0.23
133_K	143_D	0.714	0.23
154_A	165_I	0.714	0.23
121_E	147_D	0.712	0.23
60_H	70_A	0.712	0.23
45_R	105_S	0.712	0.23
31_C	92_V	0.707	0.23
128_I	141_A	0.706	0.23
18_L	29_P	0.705	0.23
15_V	57_I	0.702	0.22
145_S	154_A	0.697	0.22
73_F	116_V	0.696	0.22
75_D	199_S	0.695	0.22
69_E	138_I	0.692	0.22
161_D	215_D	0.690	0.22
86_Q	138_I	0.684	0.22
96_L	127_L	0.682	0.22
118_S	185_L	0.681	0.22
15_V	154_A	0.677	0.21
104_I	133_K	0.677	0.21
68_Y	84_A	0.676	0.21
150_K	206_E	0.674	0.21
24_T	191_Y	0.673	0.21
139_I	202_K	0.672	0.21
99_S	201_I	0.670	0.21
80_R	83_E	0.670	0.21
158_F	194_T	0.665	0.21
17_K	21_S	0.662	0.21
57_I	181_E	0.661	0.21
143_D	199_S	0.654	0.21
85_M	214_F	0.647	0.20
59_L	209_L	0.644	0.20
25_C	103_A	0.644	0.20
68_Y	129_Y	0.644	0.20
20_G	26_K	0.639	0.20
19_G	26_K	0.639	0.20
70_A	77_R	0.633	0.20
15_V	128_I	0.631	0.20
22_L	141_A	0.629	0.20
37_L	198_L	0.625	0.19
48_V	107_P	0.623	0.19
102_K	124_L	0.621	0.19
135_D	143_D	0.620	0.19
110_F	224_L	0.615	0.19
45_R	114_D	0.614	0.19
60_H	66_G	0.612	0.19
95_H	118_S	0.612	0.19
60_H	131_D	0.610	0.19
33_K	174_S	0.607	0.19
221_N	224_L	0.605	0.19
82_S	145_S	0.599	0.18
72_I	212_L	0.599	0.18
56_I	165_I	0.586	0.18
177_R	181_E	0.584	0.18
58_L	125_V	0.583	0.18
123_D	126_P	0.582	0.18
28_V	199_S	0.581	0.18
21_S	208_N	0.580	0.18
131_D	138_I	0.573	0.18
22_L	77_R	0.569	0.17
58_L	212_L	0.569	0.17
71_S	147_D	0.568	0.17
43_E	228_G	0.567	0.17
144_M	149_A	0.563	0.17
37_L	92_V	0.562	0.17
108_G	197_I	0.562	0.17
197_I	232_G	0.561	0.17
25_C	98_K	0.561	0.17
114_D	182_V	0.558	0.17
65_F	196_G	0.557	0.17
55_K	121_E	0.556	0.17
26_K	67_H	0.555	0.17
39_R	78_I	0.554	0.17
58_L	104_I	0.550	0.17
155_R	204_I	0.550	0.17
215_D	221_N	0.549	0.17
77_R	85_M	0.548	0.17
13_Y	94_K	0.548	0.17
96_L	199_S	0.548	0.17
96_L	182_V	0.546	0.17
197_I	211_A	0.545	0.17
154_A	180_D	0.544	0.17
129_Y	176_L	0.544	0.17
66_G	215_D	0.542	0.17
81_T	141_A	0.542	0.17
65_F	201_I	0.541	0.16
166_I	171_G	0.541	0.16
193_I	196_G	0.540	0.16
24_T	107_P	0.536	0.16
81_T	128_I	0.536	0.16
17_K	26_K	0.535	0.16
90_Y	142_D	0.535	0.16
163_A	172_V	0.535	0.16
75_D	141_A	0.531	0.16
22_L	234_L	0.530	0.16
30_R	68_Y	0.529	0.16
73_F	197_I	0.528	0.16
154_A	159_A	0.521	0.16
115_A	222_I	0.520	0.16
159_A	214_F	0.520	0.16
64_S	193_I	0.520	0.16
158_F	213_I	0.519	0.16
68_Y	85_M	0.516	0.16
56_I	229_Y	0.515	0.16
33_K	178_G	0.514	0.16
82_S	156_L	0.512	0.16
157_L	193_I	0.512	0.16
85_M	232_G	0.512	0.16
56_I	154_A	0.512	0.16
30_R	58_L	0.512	0.16
62_G	162_K	0.512	0.16
70_A	89_N	0.511	0.16
132_V	212_L	0.511	0.16
159_A	190_Y	0.510	0.15
76_N	80_R	0.510	0.15
150_K	174_S	0.509	0.15
32_V	85_M	0.508	0.15
120_L	126_P	0.507	0.15
89_N	105_S	0.507	0.15
177_R	222_I	0.506	0.15
134_F	153_N	0.506	0.15
101_I	175_E	0.504	0.15
14_R	56_I	0.503	0.15
60_H	88_L	0.503	0.15
155_R	166_I	0.503	0.15
85_M	144_M	0.502	0.15
27_D	41_S	0.502	0.15
144_M	160_I	0.502	0.15
59_L	204_I	0.500	0.15

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ll9A	2	0.8755	100	0.523	Contact Map
3ll5A	2	0.8797	100	0.523	Contact Map
3k4oA	2	0.9419	100	0.526	Contact Map
3d40A	2	0.8714	100	0.574	Contact Map
1gs5A	2	0.8963	100	0.596	Contact Map
4ndoB	3	0.9295	100	0.598	Contact Map
4ndoA	3	0.917	100	0.599	Contact Map
3wwnA	2	0.8257	100	0.605	Contact Map
2j5vA	2	0.805	100	0.606	Contact Map
4a7wA	2	0.8714	100	0.606	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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