Q7LXZ8 - SULSO - GREMLIN Contacts

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Q7LXZ8 - N-terminal acetyltransferase complex ard1 subunit

UniProt:	Q7LXZ8	Sequences: MVIITDATEADLDQIFQIETESFEDPYPYSLLRAYLFLANKLYLVAKQREKVVGYIIGIIQYGYRGHIVSIAVEPIYRKQGIGAKLLNEIEERFKLNGARYSYLEVNTNNLSAISFYRANGYLIMYVRKNYYGRDKHAFVMVKNLYYKYLD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	151 (130)
Sequences:	12108 (9565)
Seq/√Len:	838.9

ECOLI - RIMI YJGM MNAT YEDL YPEA PHNO YAFP YIAC YJAB RIML YHHY YJHQ ELAA ATDA
BACSU - RIMI YQJY PAIA YYAR YHFO YHDJ YWNH YUAI YTMI YBFA YESJ YSNE YBBJ YDGE YVBK YYCN SPSD BLTD YITI YRKN YYAT YKKB YOBR YJCK YOAA YYBD
HALSA - Q9HMF0 Q9HSL3 Q9HQD2 Q9HMI8 Q9HRK6 Q9HRY6
SULSO - Q7LXZ8 Y209 Q97UX1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
5_T	47_K	3.242	1.00
91_E	122_Y	3.048	1.00
21_E	74_E	2.939	1.00
46_A	82_I	2.508	1.00
84_A	120_N	2.444	1.00
56_I	90_I	2.443	1.00
5_T	11_D	2.357	1.00
84_A	119_A	2.344	1.00
58_G	90_I	2.136	1.00
124_I	127_V	2.103	1.00
88_N	120_N	2.020	1.00
45_V	52_V	2.001	1.00
53_V	77_Y	1.998	1.00
91_E	102_S	1.829	1.00
44_L	89_E	1.796	1.00
13_D	29_Y	1.771	1.00
7_A	15_I	1.771	1.00
114_I	118_R	1.749	1.00
115_S	118_R	1.738	1.00
54_G	73_V	1.727	1.00
118_R	124_I	1.724	1.00
66_G	94_F	1.717	1.00
93_R	96_L	1.694	1.00
48_Q	77_Y	1.672	1.00
7_A	45_V	1.646	1.00
89_E	92_E	1.645	1.00
43_Y	57_I	1.628	1.00
77_Y	80_Q	1.602	1.00
78_R	112_S	1.552	1.00
93_R	97_N	1.541	1.00
22_S	72_A	1.526	1.00
104_L	117_Y	1.516	1.00
48_Q	53_V	1.498	1.00
14_Q	17_Q	1.491	1.00
87_L	120_N	1.475	1.00
21_E	75_P	1.455	1.00
42_L	93_R	1.425	1.00
16_F	20_T	1.382	1.00
114_I	124_I	1.374	1.00
51_K	74_E	1.300	1.00
47_K	52_V	1.289	1.00
60_I	99_A	1.270	1.00
73_V	82_I	1.257	1.00
17_Q	21_E	1.257	1.00
29_Y	33_R	1.254	1.00
14_Q	52_V	1.226	1.00
84_A	88_N	1.226	1.00
44_L	93_R	1.218	1.00
11_D	47_K	1.211	1.00
108_T	127_V	1.199	1.00
16_F	29_Y	1.192	1.00
48_Q	80_Q	1.191	1.00
9_E	33_R	1.148	1.00
106_V	110_N	1.134	1.00
47_K	50_E	1.130	1.00
21_E	76_I	1.128	1.00
51_K	76_I	1.127	1.00
42_L	97_N	1.122	1.00
56_I	86_L	1.095	1.00
58_G	94_F	1.053	1.00
65_R	103_Y	1.052	1.00
113_A	117_Y	1.048	1.00
89_E	93_R	1.039	1.00
18_I	22_S	1.008	1.00
9_E	37_F	1.002	1.00
23_F	72_A	0.994	1.00
85_K	88_N	0.987	1.00
94_F	102_S	0.985	1.00
111_L	114_I	0.983	1.00
111_L	115_S	0.979	1.00
65_R	101_Y	0.974	1.00
81_G	84_A	0.963	1.00
19_E	55_Y	0.956	1.00
56_I	68_I	0.949	1.00
14_Q	51_K	0.927	1.00
4_I	89_E	0.926	1.00
19_E	32_L	0.909	1.00
67_H	103_Y	0.909	1.00
33_R	37_F	0.905	1.00
92_E	96_L	0.900	1.00
7_A	43_Y	0.895	1.00
102_S	122_Y	0.895	1.00
30_S	34_A	0.882	1.00
66_G	99_A	0.878	1.00
17_Q	74_E	0.867	1.00
48_Q	51_K	0.867	1.00
4_I	85_K	0.863	1.00
59_I	69_V	0.861	1.00
68_I	87_L	0.858	1.00
42_L	58_G	0.857	1.00
79_K	112_S	0.857	1.00
51_K	77_Y	0.853	1.00
74_E	77_Y	0.846	1.00
22_S	75_P	0.845	1.00
4_I	44_L	0.845	1.00
116_F	120_N	0.844	1.00
13_D	17_Q	0.838	1.00
94_F	99_A	0.837	1.00
103_Y	125_M	0.829	1.00
8_T	11_D	0.829	1.00
101_Y	125_M	0.827	1.00
46_A	53_V	0.822	1.00
31_L	35_Y	0.819	1.00
32_L	35_Y	0.799	1.00
53_V	82_I	0.791	1.00
17_Q	51_K	0.790	1.00
19_E	70_S	0.775	1.00
60_I	97_N	0.774	1.00
15_I	55_Y	0.773	1.00
104_L	113_A	0.771	1.00
28_P	31_L	0.771	1.00
19_E	23_F	0.767	1.00
12_L	16_F	0.766	1.00
22_S	78_R	0.761	1.00
18_I	74_E	0.757	1.00
106_V	114_I	0.748	1.00
106_V	113_A	0.748	1.00
91_E	120_N	0.743	1.00
87_L	116_F	0.742	1.00
67_H	105_E	0.732	1.00
18_I	52_V	0.719	1.00
110_N	113_A	0.719	1.00
46_A	54_G	0.718	1.00
57_I	69_V	0.715	1.00
30_S	33_R	0.703	1.00
7_A	12_L	0.695	1.00
9_E	12_L	0.691	1.00
85_K	89_E	0.690	1.00
46_A	86_L	0.682	1.00
6_D	44_L	0.679	1.00
6_D	42_L	0.675	1.00
88_N	92_E	0.650	1.00
54_G	82_I	0.648	1.00
5_T	45_V	0.644	1.00
87_L	117_Y	0.640	1.00
46_A	85_K	0.639	1.00
34_A	38_L	0.635	1.00
16_F	32_L	0.635	1.00
12_L	36_L	0.634	1.00
73_V	83_G	0.630	1.00
14_Q	47_K	0.626	1.00
113_A	116_F	0.623	1.00
35_Y	57_I	0.623	1.00
118_R	123_L	0.621	1.00
14_Q	18_I	0.620	1.00
82_I	85_K	0.619	1.00
91_E	95_K	0.609	1.00
79_K	119_A	0.606	1.00
89_E	96_L	0.605	1.00
61_Q	65_R	0.604	1.00
31_L	34_A	0.604	1.00
112_S	115_S	0.596	1.00
56_I	71_I	0.593	1.00
54_G	86_L	0.586	1.00
79_K	115_S	0.585	1.00
7_A	11_D	0.583	1.00
92_E	95_K	0.581	1.00
73_V	86_L	0.580	1.00
88_N	91_E	0.578	1.00
23_F	70_S	0.578	1.00
75_P	78_R	0.577	1.00
60_I	66_G	0.576	1.00
42_L	60_I	0.575	1.00
35_Y	41_K	0.572	1.00
18_I	72_A	0.571	1.00
111_L	118_R	0.571	1.00
68_I	122_Y	0.570	1.00
87_L	122_Y	0.568	1.00
46_A	73_V	0.568	1.00
61_Q	67_H	0.567	1.00
14_Q	74_E	0.566	1.00
13_D	16_F	0.561	1.00
71_I	87_L	0.557	1.00
77_Y	82_I	0.556	1.00
57_I	70_S	0.556	1.00
35_Y	38_L	0.555	1.00
58_G	93_R	0.551	1.00
6_D	93_R	0.548	1.00
27_Y	70_S	0.546	1.00
38_L	41_K	0.530	1.00
83_G	116_F	0.529	1.00
4_I	46_A	0.523	1.00
62_Y	65_R	0.522	1.00
17_Q	20_T	0.521	1.00
71_I	117_Y	0.520	1.00
55_Y	72_A	0.517	1.00
65_R	128_R	0.517	1.00
31_L	59_I	0.517	1.00
58_G	66_G	0.514	1.00
106_V	117_Y	0.513	1.00
5_T	8_T	0.510	1.00
58_G	102_S	0.509	1.00
68_I	71_I	0.506	1.00
110_N	114_I	0.503	1.00
34_A	37_F	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4kvxA	1	0.9536	99.9	0.278	Contact Map
4pv6C	3	0.9934	99.9	0.292	Contact Map
2ob0A	1	0.9934	99.9	0.301	Contact Map
2cntA	1	0.9801	99.9	0.303	Contact Map
4r3lA	1	0.9603	99.9	0.305	Contact Map
2reeA	1	0.9801	99.9	0.312	Contact Map
2r7hA	2	0.9669	99.9	0.315	Contact Map
1s3zA	2	0.894	99.9	0.334	Contact Map
3fixA	2	0.9073	99.9	0.335	Contact Map
3kkwA	1	0.9603	99.9	0.335	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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