Q7LXW4 - SULSO - GREMLIN Contacts

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Q7LXW4 - Uncharacterized protein

UniProt:	Q7LXW4	Sequences: MSEPSYFVSFWLRKILVPVDGSENSLRALDLAVDFGMRYGSKITIIHVCSDCNNMNDIQSLIEKRINNKIEYDLKIVKINIKESSVSNEILKVINEEPYDAIIMGARGTSLNSDINIGSTALAISINAPVSVILVR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	136 (124)
Sequences:	20911 (17336)
Seq/√Len:	1556.8

ECOLI - USPF USPE USPG USPC USPA USPD
BACSU - YXIE NHAX
HALSA - Q9HMJ0 Q9HRD8 Q9HPQ8 Q9HPP5 Q9HRP5 Q9HPF7 Q9HNX9 Q9HP90 Q9HMI9 Q9HHX5 Q9HHV8 Q9HHY0 Q9HMU1
SULSO - Q7LXW4 Q97V57 Q97X90 Q97U40

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
14_K	44_T	2.963	1.00
44_T	80_N	2.883	1.00
87_S	123_A	2.784	1.00
16_L	99_Y	2.701	1.00
31_L	133_I	2.554	1.00
14_K	42_K	2.471	1.00
42_K	78_K	2.324	1.00
101_A	133_I	2.193	1.00
93_V	97_E	2.178	1.00
102_I	130_V	2.063	1.00
80_N	93_V	2.046	1.00
44_T	97_E	1.872	1.00
104_M	124_I	1.853	1.00
122_L	126_I	1.851	1.00
82_K	89_E	1.837	1.00
44_T	99_Y	1.807	1.00
44_T	78_K	1.737	1.00
18_P	90_I	1.733	1.00
59_Q	63_E	1.718	1.00
46_I	93_V	1.717	1.00
48_V	89_E	1.700	1.00
84_S	89_E	1.633	1.00
94_I	102_I	1.604	1.00
18_P	104_M	1.564	1.00
17_V	32_A	1.548	1.00
67_N	79_I	1.531	1.00
89_E	92_K	1.500	1.00
44_T	93_V	1.486	1.00
35_F	39_Y	1.461	1.00
67_N	71_E	1.447	1.00
14_K	100_D	1.440	1.00
63_E	67_N	1.436	1.00
91_L	127_N	1.415	1.00
41_S	100_D	1.404	1.00
62_I	66_I	1.400	1.00
42_K	76_I	1.395	1.00
102_I	128_A	1.355	1.00
123_A	127_N	1.331	1.00
30_D	69_K	1.287	1.00
46_I	82_K	1.237	1.00
17_V	29_L	1.229	1.00
93_V	96_E	1.167	1.00
55_M	59_Q	1.163	1.00
112_N	116_N	1.153	1.00
32_A	36_G	1.152	1.00
106_A	134_L	1.138	1.00
86_V	120_T	1.132	1.00
58_I	62_I	1.119	1.00
65_R	68_N	1.102	1.00
60_S	64_K	1.097	1.00
69_K	73_D	1.090	1.00
70_I	74_L	1.087	1.00
82_K	93_V	1.074	1.00
63_E	69_K	1.070	1.00
62_I	65_R	1.067	1.00
69_K	72_Y	1.067	1.00
102_I	124_I	1.062	1.00
70_I	73_D	1.047	1.00
12_L	131_S	1.041	1.00
26_L	69_K	1.040	1.00
49_C	83_E	1.036	1.00
32_A	103_I	1.027	1.00
15_I	101_A	1.003	1.00
48_V	86_V	1.003	1.00
128_A	132_V	0.983	1.00
95_N	129_P	0.964	1.00
104_M	121_A	0.953	1.00
94_I	130_V	0.940	1.00
58_I	61_L	0.936	1.00
106_A	121_A	0.925	1.00
21_G	47_H	0.924	1.00
52_C	56_N	0.921	1.00
55_M	58_I	0.915	1.00
56_N	60_S	0.910	1.00
56_N	59_Q	0.896	1.00
16_L	46_I	0.890	1.00
22_S	25_S	0.885	1.00
31_L	35_F	0.884	1.00
65_R	69_K	0.883	1.00
49_C	81_I	0.880	1.00
34_D	38_R	0.880	1.00
59_Q	62_I	0.880	1.00
46_I	90_I	0.879	1.00
64_K	67_N	0.876	1.00
47_H	59_Q	0.868	1.00
14_K	99_Y	0.867	1.00
66_I	70_I	0.866	1.00
64_K	68_N	0.852	1.00
29_L	45_I	0.845	1.00
92_K	96_E	0.845	1.00
111_L	114_D	0.842	1.00
125_S	134_L	0.841	1.00
19_V	26_L	0.835	1.00
93_V	99_Y	0.830	1.00
114_D	122_L	0.813	1.00
31_L	135_V	0.811	1.00
36_G	43_I	0.807	1.00
68_N	72_Y	0.807	1.00
31_L	34_D	0.801	1.00
63_E	79_I	0.798	1.00
26_L	30_D	0.796	1.00
109_T	113_S	0.792	1.00
25_S	28_A	0.790	1.00
57_D	61_L	0.779	1.00
14_K	97_E	0.773	1.00
80_N	97_E	0.765	1.00
103_I	133_I	0.763	1.00
66_I	69_K	0.763	1.00
111_L	115_I	0.762	1.00
94_I	99_Y	0.760	1.00
39_Y	100_D	0.760	1.00
12_L	100_D	0.759	1.00
16_L	93_V	0.751	1.00
91_L	94_I	0.751	1.00
33_V	37_M	0.744	1.00
27_R	30_D	0.743	1.00
82_K	96_E	0.739	1.00
85_S	88_N	0.736	1.00
16_L	102_I	0.724	1.00
26_L	65_R	0.723	1.00
19_V	45_I	0.718	1.00
45_I	77_V	0.717	1.00
52_C	55_M	0.716	1.00
12_L	31_L	0.714	1.00
53_N	57_D	0.714	1.00
13_R	100_D	0.713	1.00
33_V	73_D	0.706	1.00
14_K	41_S	0.704	1.00
54_N	57_D	0.704	1.00
13_R	41_S	0.701	1.00
61_L	65_R	0.701	1.00
71_E	74_L	0.696	1.00
31_L	131_S	0.696	1.00
19_V	25_S	0.687	1.00
68_N	71_E	0.683	1.00
32_A	43_I	0.680	1.00
121_A	134_L	0.677	1.00
35_F	38_R	0.676	1.00
91_L	124_I	0.673	1.00
12_L	101_A	0.672	1.00
112_N	115_I	0.671	1.00
63_E	66_I	0.670	1.00
19_V	28_A	0.670	1.00
91_L	128_A	0.667	1.00
19_V	29_L	0.661	1.00
29_L	33_V	0.658	1.00
90_I	124_I	0.657	1.00
94_I	129_P	0.643	1.00
61_L	64_K	0.634	1.00
117_I	121_A	0.630	1.00
70_I	75_K	0.628	1.00
108_G	117_I	0.626	1.00
46_I	89_E	0.619	1.00
47_H	62_I	0.615	1.00
54_N	58_I	0.605	1.00
34_D	37_M	0.599	1.00
18_P	105_G	0.598	1.00
17_V	43_I	0.598	1.00
62_I	69_K	0.596	1.00
45_I	66_I	0.593	1.00
87_S	91_L	0.590	1.00
53_N	56_N	0.577	1.00
60_S	63_E	0.575	1.00
107_R	121_A	0.574	1.00
17_V	28_A	0.573	1.00
103_I	135_V	0.572	1.00
35_F	103_I	0.570	1.00
87_S	127_N	0.559	1.00
24_N	27_R	0.557	1.00
15_I	36_G	0.555	1.00
87_S	120_T	0.554	1.00
104_M	134_L	0.543	1.00
32_A	41_S	0.532	1.00
98_P	130_V	0.531	1.00
84_S	92_K	0.529	1.00
124_I	132_V	0.528	1.00
36_G	41_S	0.527	1.00
12_L	41_S	0.524	1.00
30_D	73_D	0.523	1.00
51_D	83_E	0.523	1.00
70_I	77_V	0.521	1.00
20_D	25_S	0.519	1.00
57_D	60_S	0.517	1.00
27_R	31_L	0.507	1.00
88_N	92_K	0.503	1.00
91_L	123_A	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3s3tA	4	0.9412	99.9	0.183	Contact Map
5ahwA	4	0.9338	99.9	0.184	Contact Map
3fg9A	3	0.9926	99.9	0.187	Contact Map
2gm3A	2	0.8382	99.9	0.189	Contact Map
3hgmA	2	0.9191	99.9	0.195	Contact Map
1mjhA	2	0.9338	99.9	0.198	Contact Map
3dloA	2	0.9779	99.9	0.204	Contact Map
4wnyA	2	0.8456	99.9	0.204	Contact Map
1tq8A	4	0.9118	99.9	0.209	Contact Map
3mt0A	1	0.9559	99.9	0.215	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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